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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A previous version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G02780.1 | AT | isopentenyl pyrophosphate:dimethylallyl pyrophosphate isomerase 2 | JGI | N/A | IEA |
| GO:0008299 | GO-bp | isoprenoid biosynthetic process | EnsemblGenomes | N/A | IEA |
| GO:0009240 | GO-bp | isopentenyl diphosphate biosynthetic process | EnsemblGenomes | N/A | IEA |
| GO:0005737 | GO-cc | cytoplasm | EnsemblGenomes | N/A | IEA |
| GO:0004452 | GO-mf | isopentenyl-diphosphate delta-isomerase activity | EnsemblGenomes | N/A | IEA |
| GO:0016787 | GO-mf | hydrolase activity | EnsemblGenomes | N/A | IEA |
| GO:0016787 | GO-mf | hydrolase activity | JGI | N/A | IEA |
| KOG0142 | KOG | Isopentenyl pyrophosphate:dimethylallyl pyrophosphate isomerase | JGI | N/A | IEA |
| PTHR10885 | Panther | ISOPENTENYL-DIPHOSPHATE DELTA-ISOMERASE | JGI | N/A | IEA |
| PTHR10885:SF0 | Panther | ISOPENTENYL-DIPHOSPHATE ISOMERASE | JGI | N/A | IEA |
| PF00293 | PFAM | NUDIX domain | JGI | N/A | IEA |
| NONMEVIPP-PWY | SoyCyc9 | methylerythritol phosphate pathway I | Plant Metabolic Network | ISS | |
| PWY-5121 | SoyCyc9 | superpathway of geranylgeranyl diphosphate biosynthesis II (via MEP) | Plant Metabolic Network | ISS | |
| PWY-5123 | SoyCyc9 | trans, trans-farnesyl diphosphate biosynthesis | Plant Metabolic Network | ISS | |
| PWY-5910 | SoyCyc9 | superpathway of geranylgeranyldiphosphate biosynthesis I (via mevalonate) | Plant Metabolic Network | ISS | |
| PWY-7560 | SoyCyc9 | methylerythritol phosphate pathway II | Plant Metabolic Network | ISS | |
| PWY-922 | SoyCyc9 | mevalonate pathway I | Plant Metabolic Network | ISS | |
| GN7V-40787 | SoyCyc9-rxn | isopentenyl-diphosphate Δ-isomerase | Plant Metabolic Network | ISS |
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Glyma.09g250200 not represented in the dataset |
Glyma.09g250200 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.
Gene information in GlycineMine developed by LIS.
Gene families from PhyloGenes.
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma.18g242300 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma09g38550 | Wm82.a1.v1.1 | IGC | As supplied by JGI |
>Glyma.09g250200.1 sequence-type=CDS polypeptide=Glyma.09g250200.1.p locus=Glyma.09g250200 ID=Glyma.09g250200.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGGCACAGTCCTCCTCGATCGTCGTTACTCTGAGGCAGCACTTGTTTAAAAGGAACCTCACCTCTCTCACTCTGCCTCACTCTCCTTCTCTTCCTTCCTTCTCCTTCTCTCTGAGAACAACACCCCACACTCCTCTCTCTCTCTCCGCTTCCTTCTCTTCTCACACCTCCATGGCCCACACTTCCCTTCCCTCCGCCGATGCCGGCATGGACGCTGTCCAGCGCCGTCTCATGTTCGAAGACGAATGCATTTTGGTGGATGAGAATGACCGTGTGGTTGGTCATGATTCAAAATACAATTGTCACTTGATGGAAAAGATTGAAGCTGAGAATTTGCTGCATAGAGCTTTCAGTGTATTCCTGTTCAACTCAAAGTATGAGTTGCTTCTTCAGCAACGATCTGCAACAAAGGTAACTTTCCCTCTTGTGTGGACAAACACCTGTTGTAGCCATCCTCTGTACCGTGAATCTGAGCTTATTGATGAGAATGCCCTTGGAGTAAGAAACGCAGCTCAGAGGAAGCTTTTGGATGAGCTTGGTATTGTTGCCGAAGATGTACCAGTTGATAAGTTCACCCCCTTGGGTCGCATTCTTTACAAGGCACCTTCTGATGGCAAATGGGGAGAGCATGAACTGGACTATCTGCTTTTCATTGTCCGGGATGTTAATGTGAACCCCAATCCTGATGAAGTGGCTGATATCAAATATGTGAACCGTGATCAGTTGAAGGAGCTGTTGAGGAAAGCTGATGCAGGTGAGGAAGGTCTGAAGCTATCACCTTGGTTCAGACTAGTTGTGGACAATTTCTTATTCAAATGGTGGGACCATCTTGAGCAAGGAACTCTTGGGGAGGCCACTGACATGAAGACCATTCACAAGTTGACATAA
>Glyma.09g250200.1.p sequence-type=predicted peptide transcript=Glyma.09g250200.1 locus=Glyma.09g250200 ID=Glyma.09g250200.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 MAQSSSIVVTLRQHLFKRNLTSLTLPHSPSLPSFSFSLRTTPHTPLSLSASFSSHTSMAHTSLPSADAGMDAVQRRLMFEDECILVDENDRVVGHDSKYNCHLMEKIEAENLLHRAFSVFLFNSKYELLLQQRSATKVTFPLVWTNTCCSHPLYRESELIDENALGVRNAAQRKLLDELGIVAEDVPVDKFTPLGRILYKAPSDGKWGEHELDYLLFIVRDVNVNPNPDEVADIKYVNRDQLKELLRKADAGEEGLKLSPWFRLVVDNFLFKWWDHLEQGTLGEATDMKTIHKLT*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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