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Report for Sequence Feature Glyma.09g248500

Feature Type:gene_model
Chromosome:Gm09
Start:46976536
stop:46978569
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.09g248500
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G65290.1AT mitochondrial acyl carrier protein 2 JGI N/AIEA
GO:0006633GO-bp fatty acid biosynthetic process EnsemblGenomesN/AIEA
GO:0009245GO-bp lipid A biosynthetic process EnsemblGenomesN/AIEA
GO:0005829GO-cc cytosol EnsemblGenomesN/AIEA
GO:0000035GO-mf acyl binding EnsemblGenomesN/AIEA
GO:0000036GO-mf acyl carrier activity EnsemblGenomesN/AIEA
GO:0031177GO-mf phosphopantetheine binding EnsemblGenomesN/AIEA
KOG1748 KOG Acyl carrier protein/NADH-ubiquinone oxidoreductase, NDUFAB1/SDAP subunit JGI N/AIEA
PTHR20863Panther ACYL CARRIER PROTEIN/ZINC FINGER PROTEIN 593-RELATED JGI N/AIEA
PTHR20863:SF5Panther ACYL CARRIER PROTEIN, MITOCHONDRIAL JGI N/AIEA
PF00550PFAM Phosphopantetheine attachment site JGI N/AIEA

Expression Patterns of Glyma.09g248500
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.09g248500
ParalogEvidenceComments
Glyma.18g244300 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.09g248500 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma09g38400 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.09g248500
>Glyma.09g248500.1 sequence-type=CDS polypeptide=Glyma.09g248500.1.p locus=Glyma.09g248500 ID=Glyma.09g248500.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCGGCGAGTAGAAGCACTTTACCTCTGATGAAGTACTTGAGAGTGCGCGTGGACGCTCTTCCCCGCAACACTCCCTTGACCCTCGCTTCCAACTTGTTGATTCGCCGCTTCTCCGAAGAGGTTAGGGGTTGTTTTCTCGACAAGTCCGAGGTCACAGATCGCGTCATTTCCTGCGTCAAAAACTTCCAGAAAGTCGATCCTTCTAAGGTTAACCCTAATGCTCACTTCCAGAATGACCTTGGATTGGATAGTTTAGATTCAGTAGAGATCGTGATGGCTCTTGAGGAAGAGTTTGGGTTCGAGATTCCTGATAATGAGGCAGACAAGATCAACTCCATTAAACTTGCAGTGGACTTCATTGCATCTCATCCTCAGGCAAAGTAG
Predicted protein sequences of Glyma.09g248500
>Glyma.09g248500.1.p sequence-type=predicted peptide transcript=Glyma.09g248500.1 locus=Glyma.09g248500 ID=Glyma.09g248500.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MAASRSTLPLMKYLRVRVDALPRNTPLTLASNLLIRRFSEEVRGCFLDKSEVTDRVISCVKNFQKVDPSKVNPNAHFQNDLGLDSLDSVEIVMALEEEFGFEIPDNEADKINSIKLAVDFIASHPQAK*






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