Glyma.09g244900

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Report for Sequence Feature Glyma.09g244900

Feature Type:	gene_model
Chromosome:	Gm09
Start:	46714819
stop:	46721820
Source:	JGI
Version:	Wm82.a2.v1
High confidence:	yes

A previous version of this gene model can be found here:

Annotations for Glyma.09g244900

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G79500.1	AT	Aldolase-type TIM barrel family protein	JGI	N/A	IEA
GO:0008152	GO-bp	metabolic process	EnsemblGenomes	N/A	IEA
GO:0009058	GO-bp	biosynthetic process	EnsemblGenomes	N/A	IEA
GO:0009058	GO-bp	biosynthetic process	JGI	N/A	IEA
GO:0005737	GO-cc	cytoplasm	EnsemblGenomes	N/A	IEA
GO:0003824	GO-mf	catalytic activity	EnsemblGenomes	N/A	IEA
GO:0008676	GO-mf	3-deoxy-8-phosphooctulonate synthase activity	EnsemblGenomes	N/A	IEA
PTHR21057	Panther	PHOSPHO-2-DEHYDRO-3-DEOXYHEPTONATE ALDOLASE	JGI	N/A	IEA
PTHR21057:SF2	Panther	2-DEHYDRO-3-DEOXYPHOSPHOOCTONATE ALDOLASE 1-RELATED	JGI	N/A	IEA
PF00793	PFAM	DAHP synthetase I family	JGI	N/A	IEA
PWY-1269	SoyCyc9	CMP-3-deoxy-D-manno-octulosonate biosynthesis	Plant Metabolic Network		ISS
PWY-5111	SoyCyc9	CMP-KDO biosynthesis II (from D-arabinose 5-phosphate)	Plant Metabolic Network		ISS
GN7V-67606	SoyCyc9-rxn	3-deoxy-D-manno-octulosonate 8-phosphate synthase	Plant Metabolic Network		ISS

Expression Patterns of Glyma.09g244900

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.09g244900 not represented in the dataset	Glyma.09g244900 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.

Gene information in GlycineMine developed by LIS.

Related Plant Genes

Gene families from PhyloGenes.

Paralogs of Glyma.09g244900

Paralog	Evidence	Comments
Glyma.18g248300	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.09g244900 Gene Call Version Wm82.a2.v1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma09g38010	Wm82.a1.v1.1	IGC	As supplied by JGI

Transcripts of Glyma.09g244900

Limit To All Plant Sequences

>Glyma.09g244900.2 sequence-type=transcript locus=Glyma.09g244900 ID=Glyma.09g244900.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
CGCAACGCAACCTCACACTTCCATTGTTTCTCTCTTCAGATCTCTCTCATTCTCACTCTGTTTTACATACAATGTCGTTCTGAATCACTGCATCTTTTCTTACTTTCACTCTCTGCAGCTTCAATTTCTGCAAAATGGATCCGTCTGCGGCATTGCTGTTTAACCACCTCAAAGGTGCAGACCCGTTCTTCCTGCTAGCGGGTCCTAATGTGATTGAATCAGAGGAGCACATTCTGCGGATGGCTAAGAACATCAAGACTATTGCATCTGAAGTTGGAATACCGTTGGTTTTCAAGTCAAGCTTTGACAAAGCTAACCGAACATCATCAAAATCATTTCGTGGCCCGGGGATGGTTGAGGGATTGAAGATACTCGAGAAGGTTAAAATAGCTTATGACATTCCTATAGTGACAGATGTGCATGAGTCTATCCAGTGTGAAGCAGTTGGCAGAGTAGCAGATATCATTCAGATTCCAGCATTCTTGTGTCGCCAAACAGATCTTCTAGTTGCAGCAGCCAAAACTGGGAAAATTATCAACATTAAGAAGGGCCAGTTCTGCGCTCCTTCTGTGATGACAAATTCAGCTGAAAAGGTCCGGTTAGCTGGAAATCCTAATGTGATGGTTTGTGAGAGAGGAACAATGTTTGGATACAATGATTTGATTGTTGATCCACGTAACTTGGAGTGGATGAGAGAAGCCAATTGTCCCATTGTAGCTGATATAACTCACTCACTACAACAGCCTGCTGGAAAGAAGTTGGATGGAGGAGGTGTGGCAAGTGGAGGTCTTCGAGAACTGATACCTTGCATTGCAAGGACAGCAGTTGCCGTTGGAGTGGATGGGATCTTCATGGAGGTGCATGATGATCCACTGAAAGCACCTGTTGATGGCCCAACACAGTGGCCGTTGCGCCACTTTAAGGAGCTACTTGAAGAGCTTGTAGCCATTGCTAGGATAAGCAAAGGGAAGCAACGGTTCAACATTGATCTCACACCATTTCGTGAATAAAGAAAGGGTGATGGTTTTCAGATATTCTGAATATAATTCCGTGACCATTGGTTTTTAAAGATTGTTCAAGGGTGATGAATGCAAAACTGTCTCCTATCGCAAGTTCCTTATAAGGAGAGTTTATATTAAAAAATGTTATTTGATGATCCATGCTTGTTACTCTGAAGTGGTAACACTATACCAACTAATGTTTGTCACATATCCCTTAATCATGTCAGTTACTGAAGTTGAGGCAATTAATTGAATATCAAAATATAGGTAGATTATTTATTAAATTTATTATTAGGTAAATTAA

>Glyma.09g244900.3 sequence-type=transcript locus=Glyma.09g244900 ID=Glyma.09g244900.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
TTTCTCTTTATCAATAACTGAAAATGGCCAGTAACTAGTATTTAACCACCGACATAACTGTGTTTTGGAATTTAGAGTGCAATAATTCCTTCGTTCTACCGTCATCAACTAGAAGAAGAAGCTTCAATTTCTGCAAAATGGATCCGTCTGCGGCATTGCTGTTTAACCACCTCAAAGGTGCAGACCCGTTCTTCCTGCTAGCGGGTCCTAATGTGATTGAATCAGAGGAGCACATTCTGCGGATGGCTAAGAACATCAAGACTATTGCATCTGAAGTTGGAATACCGTTGGTTTTCAAGTCAAGCTTTGACAAAGCTAACCGAACATCATCAAAATCATTTCGTGGCCCGGGGATGGTTGAGGGATTGAAGATACTCGAGAAGGTTAAAATAGCTTATGACATTCCTATAGTGACAGATGTGCATGAGTCTATCCAGTGTGAAGCAGTTGGCAGAGTAGCAGATATCATTCAGATTCCAGCATTCTTGTGTCGCCAAACAGATCTTCTAGTTGCAGCAGCCAAAACTGGGAAAATTATCAACATTAAGAAGGGCCAGTTCTGCGCTCCTTCTGTGATGACAAATTCAGCTGAAAAGGTCCGGTTAGCTGGAAATCCTAATGTGATGGTTTGTGAGAGAGGAACAATGTTTGGATACAATGATTTGATTGTTGATCCACGTAACTTGGAGTGGATGAGAGAAGCCAATTGTCCCATTGTAGCTGATATAACTCACTCACTACAACAGCCTGCTGGAAAGAAGGTGTGTTTAGTATTGTTTATTCCCATATTTGTTTGATATTAACTGCACTTTGAACTGTATATTTCATGTGACACTATT

>Glyma.09g244900.4 sequence-type=transcript locus=Glyma.09g244900 ID=Glyma.09g244900.4.Wm82.a2.v1 annot-version=Wm82.a2.v1
TTTCTCTTTATCAATAACTGAAAATGGCCAGTAACTAGTATTTAACCACCGACATAACTGTGTTTTGGAATTTAGAGTGCAATAATTCCTTCGTTCTACCGTCATCAACTAGAAGAAGAAGCTTCAATTTCTGCAAAATGGATCCGTCTGCGGCATTGCTGTTTAACCACCTCAAAGGTGCAGACCCGTTCTTCCTGCTAGCGGGTCCTAATGTGATTGAATCAGAGGAGCACATTCTGCGGATGGCTAAGAACATCAAGACTATTGCATCTGAAGTTGGAATACCGTTGGTTTTCAAGTCAAGCTTTGACAAAGCTAACCGAACATCATCAAAATCATTTCGTGGCCCGGGGATGGTTGAGGGATTGAAGATACTCGAGAAGGTTAAAATAGCTTATGACATTCCTATAGTGACAGATGTGCATGAGTCTATCCAGTGTGAAGCAGTTGGCAGAGTAGCAGATATCATTCAGATTCCAGCATTCTTGTGTCGCCAAACAGATCTTCTAGTTGCAGCAGCCAAAACTGGGAAAATTATCAACATTAAGAAGGGCCAGTTCTGCGCTCCTTCTGTGATGACAAATTCAGCTGAAAAGGTCCGGTTAGCTGGAAATCCTAATGTGATGGTTTGTGAGAGAGGAACAATGTTTGGATACAGTGAGTTAGTAGCAACTATTTTGAGGTTTTCTGTTCGTGAATGATGTGAATCTTGCAAGAACCATTCAATAATTGATATCAGTAATTGCTTAATGCAGAGCAAATTATTGTTTTTCCTTTCATTTTGTAATGCTTCATTTTTTAGAGCATTTTACTGCACTGCAGGATGTAATTTCACCAAGGAAATGTCATATCAAGTGATGCTAGTTATTTCTC

Coding sequences of Glyma.09g244900

Limit To All Plant Sequences

>Glyma.09g244900.1 sequence-type=CDS polypeptide=Glyma.09g244900.1.p locus=Glyma.09g244900 ID=Glyma.09g244900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGATCCGTCTGCGGCATTGCTGTTTAACCACCTCAAAGGTGCAGACCCGTTCTTCCTGCTAGCGGGTCCTAATGTGATTGAATCAGAGGAGCACATTCTGCGGATGGCTAAGAACATCAAGACTATTGCATCTGAAGTTGGAATACCGTTGGTTTTCAAGTCAAGCTTTGACAAAGCTAACCGAACATCATCAAAATCATTTCGTGGCCCGGGGATGGTTGAGGGATTGAAGATACTCGAGAAGGTTAAAATAGCTTATGACATTCCTATAGTGACAGATGTGCATGAGTCTATCCAGTGTGAAGCAGTTGGCAGAGTAGCAGATATCATTCAGATTCCAGCATTCTTGTGTCGCCAAACAGATCTTCTAGTTGCAGCAGCCAAAACTGGGAAAATTATCAACATTAAGAAGGGCCAGTTCTGCGCTCCTTCTGTGATGACAAATTCAGCTGAAAAGGTCCGGTTAGCTGGAAATCCTAATGTGATGGTTTGTGAGAGAGGAACAATGTTTGGATACAATGATTTGATTGTTGATCCACGTAACTTGGAGTGGATGAGAGAAGCCAATTGTCCCATTGTAGCTGATATAACTCACTCACTACAACAGCCTGCTGGAAAGAAGTTGGATGGAGGAGGTGTGGCAAGTGGAGGTCTTCGAGAACTGATACCTTGCATTGCAAGGACAGCAGTTGCCGTTGGAGTGGATGGGATCTTCATGGAGGTGCATGATGATCCACTGAAAGCACCTGTTGATGGCCCAACACAGTGGCCGTTGCGCCACTTTAAGGAGCTACTTGAAGAGCTTGTAGCCATTGCTAGGATAAGCAAAGGGAAGCAACGGTTCAACATTGATCTCACACCATTTCGTGAATAA

>Glyma.09g244900.2 sequence-type=CDS polypeptide=Glyma.09g244900.2.p locus=Glyma.09g244900 ID=Glyma.09g244900.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGATCCGTCTGCGGCATTGCTGTTTAACCACCTCAAAGGTGCAGACCCGTTCTTCCTGCTAGCGGGTCCTAATGTGATTGAATCAGAGGAGCACATTCTGCGGATGGCTAAGAACATCAAGACTATTGCATCTGAAGTTGGAATACCGTTGGTTTTCAAGTCAAGCTTTGACAAAGCTAACCGAACATCATCAAAATCATTTCGTGGCCCGGGGATGGTTGAGGGATTGAAGATACTCGAGAAGGTTAAAATAGCTTATGACATTCCTATAGTGACAGATGTGCATGAGTCTATCCAGTGTGAAGCAGTTGGCAGAGTAGCAGATATCATTCAGATTCCAGCATTCTTGTGTCGCCAAACAGATCTTCTAGTTGCAGCAGCCAAAACTGGGAAAATTATCAACATTAAGAAGGGCCAGTTCTGCGCTCCTTCTGTGATGACAAATTCAGCTGAAAAGGTCCGGTTAGCTGGAAATCCTAATGTGATGGTTTGTGAGAGAGGAACAATGTTTGGATACAATGATTTGATTGTTGATCCACGTAACTTGGAGTGGATGAGAGAAGCCAATTGTCCCATTGTAGCTGATATAACTCACTCACTACAACAGCCTGCTGGAAAGAAGTTGGATGGAGGAGGTGTGGCAAGTGGAGGTCTTCGAGAACTGATACCTTGCATTGCAAGGACAGCAGTTGCCGTTGGAGTGGATGGGATCTTCATGGAGGTGCATGATGATCCACTGAAAGCACCTGTTGATGGCCCAACACAGTGGCCGTTGCGCCACTTTAAGGAGCTACTTGAAGAGCTTGTAGCCATTGCTAGGATAAGCAAAGGGAAGCAACGGTTCAACATTGATCTCACACCATTTCGTGAATAA

>Glyma.09g244900.3 sequence-type=CDS polypeptide=Glyma.09g244900.3.p locus=Glyma.09g244900 ID=Glyma.09g244900.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGATCCGTCTGCGGCATTGCTGTTTAACCACCTCAAAGGTGCAGACCCGTTCTTCCTGCTAGCGGGTCCTAATGTGATTGAATCAGAGGAGCACATTCTGCGGATGGCTAAGAACATCAAGACTATTGCATCTGAAGTTGGAATACCGTTGGTTTTCAAGTCAAGCTTTGACAAAGCTAACCGAACATCATCAAAATCATTTCGTGGCCCGGGGATGGTTGAGGGATTGAAGATACTCGAGAAGGTTAAAATAGCTTATGACATTCCTATAGTGACAGATGTGCATGAGTCTATCCAGTGTGAAGCAGTTGGCAGAGTAGCAGATATCATTCAGATTCCAGCATTCTTGTGTCGCCAAACAGATCTTCTAGTTGCAGCAGCCAAAACTGGGAAAATTATCAACATTAAGAAGGGCCAGTTCTGCGCTCCTTCTGTGATGACAAATTCAGCTGAAAAGGTCCGGTTAGCTGGAAATCCTAATGTGATGGTTTGTGAGAGAGGAACAATGTTTGGATACAATGATTTGATTGTTGATCCACGTAACTTGGAGTGGATGAGAGAAGCCAATTGTCCCATTGTAGCTGATATAACTCACTCACTACAACAGCCTGCTGGAAAGAAGGTGTGTTTAGTATTGTTTATTCCCATATTTGTTTGA

>Glyma.09g244900.4 sequence-type=CDS polypeptide=Glyma.09g244900.4.p locus=Glyma.09g244900 ID=Glyma.09g244900.4.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGATCCGTCTGCGGCATTGCTGTTTAACCACCTCAAAGGTGCAGACCCGTTCTTCCTGCTAGCGGGTCCTAATGTGATTGAATCAGAGGAGCACATTCTGCGGATGGCTAAGAACATCAAGACTATTGCATCTGAAGTTGGAATACCGTTGGTTTTCAAGTCAAGCTTTGACAAAGCTAACCGAACATCATCAAAATCATTTCGTGGCCCGGGGATGGTTGAGGGATTGAAGATACTCGAGAAGGTTAAAATAGCTTATGACATTCCTATAGTGACAGATGTGCATGAGTCTATCCAGTGTGAAGCAGTTGGCAGAGTAGCAGATATCATTCAGATTCCAGCATTCTTGTGTCGCCAAACAGATCTTCTAGTTGCAGCAGCCAAAACTGGGAAAATTATCAACATTAAGAAGGGCCAGTTCTGCGCTCCTTCTGTGATGACAAATTCAGCTGAAAAGGTCCGGTTAGCTGGAAATCCTAATGTGATGGTTTGTGAGAGAGGAACAATGTTTGGATACAGTGAGTTAGTAGCAACTATTTTGAGGTTTTCTGTTCGTGAATGA

Predicted protein sequences of Glyma.09g244900

Limit To All Plant Sequences

>Glyma.09g244900.1.p sequence-type=predicted peptide transcript=Glyma.09g244900.1 locus=Glyma.09g244900 ID=Glyma.09g244900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MDPSAALLFNHLKGADPFFLLAGPNVIESEEHILRMAKNIKTIASEVGIPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIAYDIPIVTDVHESIQCEAVGRVADIIQIPAFLCRQTDLLVAAAKTGKIINIKKGQFCAPSVMTNSAEKVRLAGNPNVMVCERGTMFGYNDLIVDPRNLEWMREANCPIVADITHSLQQPAGKKLDGGGVASGGLRELIPCIARTAVAVGVDGIFMEVHDDPLKAPVDGPTQWPLRHFKELLEELVAIARISKGKQRFNIDLTPFRE*

>Glyma.09g244900.2.p sequence-type=predicted peptide transcript=Glyma.09g244900.2 locus=Glyma.09g244900 ID=Glyma.09g244900.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MDPSAALLFNHLKGADPFFLLAGPNVIESEEHILRMAKNIKTIASEVGIPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIAYDIPIVTDVHESIQCEAVGRVADIIQIPAFLCRQTDLLVAAAKTGKIINIKKGQFCAPSVMTNSAEKVRLAGNPNVMVCERGTMFGYNDLIVDPRNLEWMREANCPIVADITHSLQQPAGKKLDGGGVASGGLRELIPCIARTAVAVGVDGIFMEVHDDPLKAPVDGPTQWPLRHFKELLEELVAIARISKGKQRFNIDLTPFRE*

>Glyma.09g244900.3.p sequence-type=predicted peptide transcript=Glyma.09g244900.3 locus=Glyma.09g244900 ID=Glyma.09g244900.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
MDPSAALLFNHLKGADPFFLLAGPNVIESEEHILRMAKNIKTIASEVGIPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIAYDIPIVTDVHESIQCEAVGRVADIIQIPAFLCRQTDLLVAAAKTGKIINIKKGQFCAPSVMTNSAEKVRLAGNPNVMVCERGTMFGYNDLIVDPRNLEWMREANCPIVADITHSLQQPAGKKVCLVLFIPIFV*

>Glyma.09g244900.4.p sequence-type=predicted peptide transcript=Glyma.09g244900.4 locus=Glyma.09g244900 ID=Glyma.09g244900.4.Wm82.a2.v1 annot-version=Wm82.a2.v1
MDPSAALLFNHLKGADPFFLLAGPNVIESEEHILRMAKNIKTIASEVGIPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIAYDIPIVTDVHESIQCEAVGRVADIIQIPAFLCRQTDLLVAAAKTGKIINIKKGQFCAPSVMTNSAEKVRLAGNPNVMVCERGTMFGYSELVATILRFSVRE*

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