SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma.09g243100

Feature Type:gene_model
Chromosome:Gm09
Start:46570586
stop:46571857
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.09g243100
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G44810.1AT alpha/beta-Hydrolases superfamily protein JGI N/AIEA
GO:0006629GO-bp lipid metabolic process EnsemblGenomesN/AIEA
GO:0006629GO-bp lipid metabolic process JGI N/AIEA
GO:0004806GO-mf triglyceride lipase activity JGI N/AIEA
GO:0016787GO-mf hydrolase activity EnsemblGenomesN/AIEA
KOG4569 KOG Predicted lipase JGI N/AIEA
PTHR21493Panther CGI-141-RELATED/LIPASE CONTAINING PROTEIN JGI N/AIEA
PTHR21493:SF9Panther GOLGI TRANSPORT PROTEIN 1-RELATED JGI N/AIEA
PF01764PFAM Lipase (class 3) JGI N/AIEA
LIPASYN-PWYSoyCyc9 phospholipases Plant Metabolic Network ISS
PWY-6803SoyCyc9 phosphatidylcholine acyl editing Plant Metabolic Network ISS
GN7V-53609SoyCyc9-rxn Enzyme name not determined Plant Metabolic Network ISS

Expression Patterns of Glyma.09g243100
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.09g243100
ParalogEvidenceComments
Glyma.18g251500 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.09g243100 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma09g37840 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.09g243100
>Glyma.09g243100.1 sequence-type=CDS polypeptide=Glyma.09g243100.1.p locus=Glyma.09g243100 ID=Glyma.09g243100.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGAGAACTCTTCACTACTACACTTCAACCCTCATTAGACCACAGTGCACAACCCTCGTTCAAACCACCAAACCCGTGCAAAAGATGGAGAAAATGATGAACATGCCCCAGTTGCAATCATCATCCTTATCGTCGTCGCCACCATTGTCGAAGAAAGTTGGGAAGAGATGGAAAGAGTACCAAGGAATGAACAATTGGGACGGTTTATTGGACCCATTGGACGAGAACCTTCGCGCTGAGATTCTCCGCTATGGCCATTTCGTTGAGGCTGCGTATAAGTCCTTCGAATTCGACCCTTCTTCTCCAAACTACGCCACATGCAAGTTCCAAAAGAACACACTCTTCGAACAGTGTGGGTTACGCAACACAGGTTACAAGGTAACAAAACACCTACGTGCAACCTCGGGGATCAAATTACCTAGCTGGGTAGCAACACAATCGAGCTACGTTGGGTACGTAGCAGTGTGTAACGACAAAGAAGAGATCAAACGATTGGGTCGAAGAGACATTGTTGTTGCCTTTAGAGGAACGGCAACGTGTTTAGAATGGCTCGAGAATCTTCGAGCCACTTTGACACATGTTTCTGTTCCATCTGTTGCAACAGGGATCACAGCAGAACCATGCAGCATGGATGGAAATGGAGCAATGGTGGAAAGTGGGTTCTTGAGTTTGTACACGTCAGCAGGTAGTAGCAAACAATCATTTACGAGTTTGCAAGATATGGTGAGGAAAGAGATTGGTCGGATTCTTAAAACTTACGAAGGAGAGAATTTGAGTTTGACGATAACGGGGCATAGTTTGGGAGCGGCATTGGCCACTCTCACGGCATATGACATAAAGAACAGTTTCATTCGGCAGCCGCCGGTAACGGTGATCTCCTTTGGCGGTCCACGGGTTGGGAACCGAAGCTTCCGGCGGCAGCTGGAGGAAACTGGGATCAAGCTGTTGCGCATAGTGAACTCCGATGATGTTATAACCAAGGTGCCCGGGTTTGTGTTCGATGACGTGGACAAAACTGACGATGATGTGGCATGCAATGGAGGTGCCCACGTGGTTCAGAGGTGGATTCGAAAGCGAGCGGAAGAGGTACAGTGGCTATTGTACTCTGAGGTTGGAAAGGAGCTACGCCTCTGTAGCAGGGATTCTCCGTACCTCAGGGGTGTCAACATTGCCACCTGCCACGATTTGAACACCTACTTGCACCTTGTTGACGGCTTTGTCAGTTCCACTTGTCCCTTTAGAGCCACTGCCAAGAGATTCCTTCAGCATTGA
Predicted protein sequences of Glyma.09g243100
>Glyma.09g243100.1.p sequence-type=predicted peptide transcript=Glyma.09g243100.1 locus=Glyma.09g243100 ID=Glyma.09g243100.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MRTLHYYTSTLIRPQCTTLVQTTKPVQKMEKMMNMPQLQSSSLSSSPPLSKKVGKRWKEYQGMNNWDGLLDPLDENLRAEILRYGHFVEAAYKSFEFDPSSPNYATCKFQKNTLFEQCGLRNTGYKVTKHLRATSGIKLPSWVATQSSYVGYVAVCNDKEEIKRLGRRDIVVAFRGTATCLEWLENLRATLTHVSVPSVATGITAEPCSMDGNGAMVESGFLSLYTSAGSSKQSFTSLQDMVRKEIGRILKTYEGENLSLTITGHSLGAALATLTAYDIKNSFIRQPPVTVISFGGPRVGNRSFRRQLEETGIKLLRIVNSDDVITKVPGFVFDDVDKTDDDVACNGGAHVVQRWIRKRAEEVQWLLYSEVGKELRLCSRDSPYLRGVNIATCHDLNTYLHLVDGFVSSTCPFRATAKRFLQH*






Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
USDA Logo
Iowa State University Logo