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Report for Sequence Feature Glyma.09g236500

Feature Type:gene_model
Chromosome:Gm09
Start:45886630
stop:45888854
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.09g236500
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G48320.1AT Thioesterase superfamily protein JGI N/AIEA
KOG3328 KOG HGG motif-containing thioesterase JGI N/AIEA
PTHR12418Panther FAMILY NOT NAMED JGI N/AIEA
PTHR12418:SF10Panther SUBFAMILY NOT NAMED JGI N/AIEA
PF03061PFAM Thioesterase superfamily JGI N/AIEA
PWY-5791SoyCyc9 1,4-dihydroxy-2-naphthoate biosynthesis II (plants) Plant Metabolic Network ISS
PWY-5837SoyCyc9 1,4-dihydroxy-2-naphthoate biosynthesis Plant Metabolic Network ISS
PWY-5863SoyCyc9 superpathway of phylloquinol biosynthesis Plant Metabolic Network ISS
GN7V-64907SoyCyc9-rxn 1,4-dihydroxy-2-naphthoyl-CoA hydrolase Plant Metabolic Network ISS

Expression Patterns of Glyma.09g236500
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.09g236500
ParalogEvidenceComments
Glyma.18g260800 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.09g236500 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma09g37120 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.09g236500
>Glyma.09g236500.1 sequence-type=CDS polypeptide=Glyma.09g236500.1.p locus=Glyma.09g236500 ID=Glyma.09g236500.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGAAAGCCATCCCCCATCATCAAAGGCTTCTGAAGTAGATGCTCCCCTTCAATCAATTGGCTTTGAGATTCAAGACTTGTCTCCACAAAGGGTATCTGGCCATCTAACTATTACCCAAAAATGCTGCCAGCCATTCAAGGTGTTACATGGAGGGGTATCAGCATTGGTGGCAGAGTCTCTGGCAAGCATAGGAGCACACATGGCTAGTGGATACCAAAGAGTGGCTGGGATTCAACTCAGCATCAACCATTTGAAGAGTGCTGTGCTTGGTGACTTGGTCTTTGCTGAAGCCACCCCTTTAAATGTTGGCAAAACCATTCAGGTATGGGAAGTGAGATTATGGAAGCTTGATCCTTCAAACAAACAAAAGAAAACTCTGATATCATCATCAAGGGTTACTCTACTGTGCAACATGCCTGTCCCAGATAATGCAAAAGACGCTGGAGACAAACTCAGGAAGCATGCAAGGCTATGA
Predicted protein sequences of Glyma.09g236500
>Glyma.09g236500.1.p sequence-type=predicted peptide transcript=Glyma.09g236500.1 locus=Glyma.09g236500 ID=Glyma.09g236500.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MESHPPSSKASEVDAPLQSIGFEIQDLSPQRVSGHLTITQKCCQPFKVLHGGVSALVAESLASIGAHMASGYQRVAGIQLSINHLKSAVLGDLVFAEATPLNVGKTIQVWEVRLWKLDPSNKQKKTLISSSRVTLLCNMPVPDNAKDAGDKLRKHARL*






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