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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A previous version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G31480.1 | AT | shoot gravitropism 2 (SGR2) | JGI | N/A | IEA |
| GO:0009590 | GO-bp | detection of gravity | EnsemblGenomes | N/A | IEA |
| GO:0009660 | GO-bp | amyloplast organization | EnsemblGenomes | N/A | IEA |
| GO:0009959 | GO-bp | negative gravitropism | EnsemblGenomes | N/A | IEA |
| GO:0005737 | GO-cc | cytoplasm | EnsemblGenomes | N/A | IEA |
| GO:0005773 | GO-cc | vacuole | EnsemblGenomes | N/A | IEA |
| GO:0009506 | GO-cc | plasmodesma | EnsemblGenomes | N/A | IEA |
| GO:0009705 | GO-cc | plant-type vacuole membrane | EnsemblGenomes | N/A | IEA |
| GO:0004620 | GO-mf | phospholipase activity | EnsemblGenomes | N/A | IEA |
| GO:0046872 | GO-mf | metal ion binding | EnsemblGenomes | N/A | IEA |
| GO:0046872 | GO-mf | metal ion binding | JGI | N/A | IEA |
| PTHR15457 | Panther | SEC-23 INTERACTING PROTEIN P125 | JGI | N/A | IEA |
| PTHR15457:SF5 | Panther | JGI | N/A | IEA | |
| PF02862 | PFAM | DDHD domain | JGI | N/A | IEA |
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Glyma.09g234500 not represented in the dataset |
Glyma.09g234500 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.
Gene information in GlycineMine developed by LIS.
Gene families from PhyloGenes.
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma09g36920 | Wm82.a1.v1.1 | IGC | As supplied by JGI |
>Glyma.09g234500.1 sequence-type=CDS polypeptide=Glyma.09g234500.1.p locus=Glyma.09g234500 ID=Glyma.09g234500.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGGCGGAAGGGGAAGAGCTTCGGCCTGACTTGCTGAAAAACACGCCTTCTAACATTGCGAGATTGGAGGACGTGATCGAACACTCTAAAGCAAGGCAAAAGTATCTCGCCCATACTTCTAGCTCCTCTGATGGCGGTGATGTTCGCTGGTACTTTTGTAAGATCTCTTTGGCTCCCAACGAGTTGGCAGCCTCTGTCCCGCCAACAGAGATTGTAGGCAAGAGTGACTATTTTCGTTTTGGCATGAGAGATTCTCTCGCTATTGAAGCATCTTTCTTGCAGAGAGAGGAAGAATTGCTTTCTAGTTGGTGGAGGGAGTATGCCGAATGTAGTGAAGGCCCCAGAGAACGACAAAGTTCTAGTTCCAAGGCAGATACTGAATCTTTTATGGGACATACTCAATCATCTCAACTATATGAAATAGAGGAAGAGAGGGTTGGTGTCCCTGTAAAGGGAGGACTGTACGAGGTAGATTTGGTCAAGAGACATTGTTTCCCTGTTTATTGGAATGGAGAAAACCGACGTGTCCTCAGAGGCCACTGGTTTGCTCGTAAAGGGGGCCTCGATTGGCTACCACTTCGTGAAGATGTTGCTGAACAACTAGAGATTGCTTATCGTAGTCAGGTTTGGCACCGGAGAACATTTCAACCATCAGGACTTTTTGCTGCTCGAGTTGATTTGCAAGGCTCTACCCAAGGCCTGCATGCCCTTTTCATGGGAGAAGATGATACCTGGGAAGCCTGGCTAAATTTTGATGCTTCTGGCTTTTCTAGCTTTGTTAGTTTTGCTGGAAATGGAATTAAACTTAGGCGTGGTTACTCTCCATCAAATTCACCAAAACCAACCCAGGATGAACTAAGGCAGCAGAAGGAGGAGGATATGGATGATTACTGTTCGCAGGTCCCTGTTCGACACTTGGTATTTATGGTTCATGGGATTGGTCAAAGATTGGAAAAGTCCAATTTGGTTGATGATGTGGGCAATTTCCGGCATATTACAGCAAGTCTTGCAGAGCAGCACCTTACTCCACATCAACGTGGCACTCAAAGGGTCCTCTTTATCCCATGCCAGTGGAGAAGAGGTTTGAAGCTGAGTGGTGAAACTGCTGTTGAAAAGATAACTTTGGATGGAGTGCGAGGATTACGTGTCACGCTGAGCGCAACTGTTCATGATGTGTTATACTACATGAGCCCAATTTACTGTCAAGACATAATTAACTCGGTATCCAACCAACTGAATCGATTATATTTGAAGTTTCTCAAAAGAAATCCTGGATATGATGGAAAGGTTTCATTATATGGTCATTCTCTGGGAAGTGTCCTCTCATATGATATCCTTTGCCATCAAGATAATCTATCATCCCCATTTCCAATGGATTGGGTGTATAAGGAACATGGTGAAAATGAGGAATCACTCTCTGATAAGAAAGATCATTATGTGCAGAACTCACCAATCAATCAGGATGACACATTCAGTATGGTGAGCCCCTCTGAAGAAAAAAAGAGTACACAAGAGACTTGTTCAGAAATGGAGGCAGAATATTCTGAGGAGTCCTCAGTTTTAGGCCATGCATTATCAAGTGTAAATGAATTTACTGCAGAACCTATCTCTCTGGAACCAAGTAATAAGGGTGATGTTTCCGAGTTCCTTGCCGATTCTGGTGACACATTTTTTGAGAAAATGGGTGGTGCATTGGATATGCCTCAGAGCATGAATGTTGAGCTGCCAATGGATAAGGAAGAATGTAAAGTTACAAGCAACGAAGATGAAGTAATCAAGAAGCTCAGAGAAGAGATTGATTCATTGAAAGCCAATCTAACTGAACTGGAATCACGTCATAGCAATAATTATACTGAGGAAGAGTTACATTCTGTAAAAAAGTTATCTAAAAAGTTACCTCCCATACAAGAAGCACCAAAGAGTTATACTCCATATATCAAGTACACCAAGCTTCAATTTAAGGTTGATACATTCTTTGCCGTTGGATCCCCTCTTGGTGTATTTCTTGCACTTCGTAATATCCGAATTGGCATTGGTAGAGGCCAAGAATATTGGGAGCAGGAAAATATAAGAGAGGAGATGCCGGCTTGTCGGCAGATGTTCAACATTTTTCACCCCTATGATCCCGTAGCATACAGGATAGAGCCACTTGTGTGCAAAGAATACATCAGCCAACGGCCTGTTTTGATTCCATATCACAGAGGAGGAAAAAGGTTGCATATTGGATTTCAGGAATTTACTGAAGACCTAGCAGTTCGAACTCATGCAATAAAGAATTATATGAAATCTGCAAGGGATAAGGTAATCACAGTGTGTCAGTCGAGGAAAATGGAGAACATAGAAGGGGAGAGTTCTGAAGAGGAAGAACAGCCATCATATGGATCTTTTATGATGGAGAGGTTGACAGGAAGCATGAGTGGACGAATTGATCACATGCTTCAGGACAAGACCTTTGAGCATCCATATCTGCAAGCCATTGGAGCTCATACAAACTATTGGCGGGATTATGATACTGCTCTTTTCATATTGAAACACTTGTATGGAGAAATACCAGAAGATTCTGATTTGTTGGTTGGATTTACTGGGGACAACTCAAAATCTGAGAGTACCTCTGTTAGTTGGTATGAACCGAGAGACACGGTTGAGGAAGATCTTCCGTTGACTTTCTCAGACAAGGTTATGGCCAGAAGCTTCTCGAGCAAAGCTAAGAAGGTTCTGCAGAAGCACACTGCGTTTAATTTCTAA
>Glyma.09g234500.1.p sequence-type=predicted peptide transcript=Glyma.09g234500.1 locus=Glyma.09g234500 ID=Glyma.09g234500.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 MAEGEELRPDLLKNTPSNIARLEDVIEHSKARQKYLAHTSSSSDGGDVRWYFCKISLAPNELAASVPPTEIVGKSDYFRFGMRDSLAIEASFLQREEELLSSWWREYAECSEGPRERQSSSSKADTESFMGHTQSSQLYEIEEERVGVPVKGGLYEVDLVKRHCFPVYWNGENRRVLRGHWFARKGGLDWLPLREDVAEQLEIAYRSQVWHRRTFQPSGLFAARVDLQGSTQGLHALFMGEDDTWEAWLNFDASGFSSFVSFAGNGIKLRRGYSPSNSPKPTQDELRQQKEEDMDDYCSQVPVRHLVFMVHGIGQRLEKSNLVDDVGNFRHITASLAEQHLTPHQRGTQRVLFIPCQWRRGLKLSGETAVEKITLDGVRGLRVTLSATVHDVLYYMSPIYCQDIINSVSNQLNRLYLKFLKRNPGYDGKVSLYGHSLGSVLSYDILCHQDNLSSPFPMDWVYKEHGENEESLSDKKDHYVQNSPINQDDTFSMVSPSEEKKSTQETCSEMEAEYSEESSVLGHALSSVNEFTAEPISLEPSNKGDVSEFLADSGDTFFEKMGGALDMPQSMNVELPMDKEECKVTSNEDEVIKKLREEIDSLKANLTELESRHSNNYTEEELHSVKKLSKKLPPIQEAPKSYTPYIKYTKLQFKVDTFFAVGSPLGVFLALRNIRIGIGRGQEYWEQENIREEMPACRQMFNIFHPYDPVAYRIEPLVCKEYISQRPVLIPYHRGGKRLHIGFQEFTEDLAVRTHAIKNYMKSARDKVITVCQSRKMENIEGESSEEEEQPSYGSFMMERLTGSMSGRIDHMLQDKTFEHPYLQAIGAHTNYWRDYDTALFILKHLYGEIPEDSDLLVGFTGDNSKSESTSVSWYEPRDTVEEDLPLTFSDKVMARSFSSKAKKVLQKHTAFNF*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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