Glyma.09g234100

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Report for Sequence Feature Glyma.09g234100

Feature Type:	gene_model
Chromosome:	Gm09
Start:	45648838
stop:	45651532
Source:	JGI
Version:	Wm82.a2.v1
High confidence:	yes

A previous version of this gene model can be found here:

Annotations for Glyma.09g234100

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G46280.1	AT	TGF-beta receptor interacting protein 1	JGI	N/A	IEA
AT2G46290.1	AT	Transducin/WD40 repeat-like superfamily protein	JGI	N/A	IEA
GO:0001731	GO-bp	formation of translation preinitiation complex	EnsemblGenomes	N/A	IEA
GO:0001732	GO-bp	formation of cytoplasmic translation initiation complex	EnsemblGenomes	N/A	IEA
GO:0002183	GO-bp	cytoplasmic translational initiation	EnsemblGenomes	N/A	IEA
GO:0006412	GO-bp	translation	EnsemblGenomes	N/A	IEA
GO:0006413	GO-bp	translational initiation	EnsemblGenomes	N/A	IEA
GO:0006446	GO-bp	regulation of translational initiation	EnsemblGenomes	N/A	IEA
GO:0005737	GO-cc	cytoplasm	EnsemblGenomes	N/A	IEA
GO:0005852	GO-cc	eukaryotic translation initiation factor 3 complex	EnsemblGenomes	N/A	IEA
GO:0016282	GO-cc	eukaryotic 43S preinitiation complex	EnsemblGenomes	N/A	IEA
GO:0033290	GO-cc	eukaryotic 48S preinitiation complex	EnsemblGenomes	N/A	IEA
GO:0003743	GO-mf	translation initiation factor activity	EnsemblGenomes	N/A	IEA
GO:0005515	GO-mf	protein binding	EnsemblGenomes	N/A	IEA
GO:0005515	GO-mf	protein binding	JGI	N/A	IEA
KOG0643	KOG	Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1)	JGI	N/A	IEA
PTHR19877	Panther	WD40 REPEAT PROTEIN	JGI	N/A	IEA
PF00400	PFAM	WD domain, G-beta repeat	JGI	N/A	IEA

Expression Patterns of Glyma.09g234100

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.09g234100 not represented in the dataset	Glyma.09g234100 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.

Gene information in GlycineMine developed by LIS.

Related Plant Genes

Gene families from PhyloGenes.

Paralogs of Glyma.09g234100

Paralog	Evidence	Comments
Glyma.12g002900	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.09g234100 Gene Call Version Wm82.a2.v1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma09g36870	Wm82.a1.v1.1	IGC	As supplied by JGI

Transcripts of Glyma.09g234100

Limit To All Plant Sequences

>Glyma.09g234100.2 sequence-type=transcript locus=Glyma.09g234100 ID=Glyma.09g234100.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
TGTTTTGTAAGATAATAGGTTAAAATATTAATAAGCGAATGTTGAACCCTAACTGAGGATACACTCGCACCGGTAGCTGCTGCAGCCCCTTGTGAGTGAGTGTTCTGAAAGATGAGACCAATTTTGATGAAAGGTCATGAGAGGCCATTGACGTTCCTGAAATACAACAGGGACGGCGATCTCCTCTTCTCCTGCGCCAAGGACCACAACCCAACCGTCTGGTTTGCCGACAATGGCGAACGCTTGGGCACTTATCGCGGCCACAACGGCGCCGTTTGGACCTGCGACGTCTCAAGAGATTCGGTTCGTCTGATCACGGGTAGTGCCGATCAGACCGCCAAGCTATGGGACGTGCAAAGCGGTCTGCAATTGTACACCTTCAATTTCGATTCCCCTGCCAGGTCCGTCGATTTCTCCGTCGGTGATAGGCTGGCCGTTATCACCACCGACCCCTTCATGGAGTTATCCTCTGCAATCCATGTCAAACGCATTGCTGACGATCCAACCGAGCAGAGTGGGGAGTCTCTGCTTCTCATTAAGGGTCCTCTGGGAAGGATAAACAGAGCTATTTGGGGACCCCTCAACAGTACCATTATTAGTGCCGGGGAAGATGCTGTTATTCGTATTTGGGATTCCGAGACCGGAAAACTGCTTAAAGAGTCCGACAAGGAATCTGGCCATAAAAAGACTGTAACTTCGCTTGCCAAGTCTGCCGATGGTTCACATTTCCTTACTGGTTCCCTTGATAAGTCTGCCAGGGTGGTTATTGGAGGTGGTCAGGATGCCTCAGCTGTTACAACTACTGATCATCGTGCTGGCAAATTCGAAGCCAAATTCTTTGACAAGATTCTTCAAGAAGAAATTGGGGGTGTGAAAGGCCACTTTGGACCAATTAATGCATTGGCTTTTAACCCTGATGGAAAAAGTTTTTCAAGTGGAGGTGAAGATGGTTATGTACGGTTGCACCACTTCGACCCAGATTATTTCAACATCAAAATTTAGTGCCTGATGGTTTGTGGTTAAAATTAGGTGGTTCCTAGAAGTTAGCTTTTAATTATTCTCAACCAACATTTTTGTAATGCGATGCTCCCTATATTGGTAATATGGAAGAATTTTTTTTAATGAATTTATGCATTTTTGGTTTATGTTGTATCGACATGGTCAATTTTGGTTGGAGTGGCACTCTTAATTAAGGAGTTTTACTTCCCACGGCACAAGATTTTGATAAGATTAGAAGTTTGGCATATATATTAGGCGCGAATTGGAACTCTTTTTGTATTCGTATGAG

>Glyma.09g234100.3 sequence-type=transcript locus=Glyma.09g234100 ID=Glyma.09g234100.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
TGTTTTGTAAGATAATAGGTTAAAATATTAATAAGCGAATGTTGAACCCTAACTGAGGATACACTCGCACCGGTAGCTGCTGCAGCCCCTTGTGAGTGAGTGTTCTGAAAGATGAGACCAATTTTGATGAAAGGTCATGAGAGGCCATTGACGTTCCTGAAATACAACAGGGACGGCGATCTCCTCTTCTCCTGCGCCAAGGACCACAACCCAACCGTCTGGTTTGCCGACAATGGCGAACGCTTGGGCACTTATCGCGGCCACAACGGCGCCGTTTGGACCTGCGACGTCTCAAGAGATTCGGTTCGTCTGATCACGGGTAGTGCCGATCAGACCGCCAAGCTATGGGACGTGCAAAGCGGTCTGCAATTGTACACCTTCAATTTCGATTCCCCTGCCAGGTCCGTCGATTTCTCCGTCGGTGATAGGCTGGCCGTTATCACCACCGACCCCTTCATGGAGTTATCCTCTGCAATCCATGTCAAACGCATTGCTGACGATCCAACCGAGCAGAGTGGGGAGTCTCTGCTTCTCATTAAGGGTCCTCTGGGAAGGATAAACAGAGCTATTTGGGGACCCCTCAACAGTACCATTATTAGTGCCGGGGAAGATGCTGTTATTCGTATTTGGGATTCCGAGACCGGAAAACTGCTTAAAGAGTCCGACAAGGAATCTGGCCATAAAAAGACTGTAACTTCGCTTGCCAAGTCTGCCGATGGTTCACATTTCCTTACTGGTTCCCTTGATAAGTCTGCCAGGCTTTGGGATACTAGGTCATTGACTCTTATCAAGACCTATGTCACAGAACGCCCAGTCAATGCAGTTACCATGTCACCTCTTCTTGATCATGTATGTGGTTATTGGAGGTGGTCAGGATGCCTCAGCTGTTACAACTACTGATCATCGTGCTGGCAAATTCGAAGCCAAATTCTTTGACAAGATTCTTCAAGAAGAAATTGGGGGTGTGAAAGGCCACTTTGGACCAATTAATGCATTGGCTTTTAACCCTGATGGAAAAAGTTTTTCAAGTGGAGGTGAAGATGGTTATGTACGGTTGCACCACTTCGACCCAGATTATTTCAACATCAAAATTTAGTGCCTGATGGTTTGTGGTTAAAATTAGGTGGTTCCTAGAAGTTAGCTTTTAATTATTCTCAACCAACATTTTTGTAATGCGATGCTCCCTATATTGGTAATATGGAAGAATTTTTTTTAATGAATTTATGCATTTTTGGTTTATGTTGTATCGACATGGTCAATTTTGGTTGGAGTGGCACTCTTAATTAAGGAGTTTTACTTCCCACGGCACAAGATTTTGATAAGATTAGAAGTTTGGCATATATATTAGGCGCGAATTGGAACTCTTTTTGTATTCGTATGAG

Coding sequences of Glyma.09g234100

Limit To All Plant Sequences

>Glyma.09g234100.1 sequence-type=CDS polypeptide=Glyma.09g234100.1.p locus=Glyma.09g234100 ID=Glyma.09g234100.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGAGACCAATTTTGATGAAAGGTCATGAGAGGCCATTGACGTTCCTGAAATACAACAGGGACGGCGATCTCCTCTTCTCCTGCGCCAAGGACCACAACCCAACCGTCTGGTTTGCCGACAATGGCGAACGCTTGGGCACTTATCGCGGCCACAACGGCGCCGTTTGGACCTGCGACGTCTCAAGAGATTCGGTTCGTCTGATCACGGGTAGTGCCGATCAGACCGCCAAGCTATGGGACGTGCAAAGCGGTCTGCAATTGTACACCTTCAATTTCGATTCCCCTGCCAGGTCCGTCGATTTCTCCGTCGGTGATAGGCTGGCCGTTATCACCACCGACCCCTTCATGGAGTTATCCTCTGCAATCCATGTCAAACGCATTGCTGACGATCCAACCGAGCAGAGTGGGGAGTCTCTGCTTCTCATTAAGGGTCCTCTGGGAAGGATAAACAGAGCTATTTGGGGACCCCTCAACAGTACCATTATTAGTGCCGGGGAAGATGCTGTTATTCGTATTTGGGATTCCGAGACCGGAAAACTGCTTAAAGAGTCCGACAAGGAATCTGGCCATAAAAAGACTGTAACTTCGCTTGCCAAGTCTGCCGATGGTTCACATTTCCTTACTGGTTCCCTTGATAAGTCTGCCAGGCTTTGGGATACTAGGTCATTGACTCTTATCAAGACCTATGTCACAGAACGCCCAGTCAATGCAGTTACCATGTCACCTCTTCTTGATCATGTGGTTATTGGAGGTGGTCAGGATGCCTCAGCTGTTACAACTACTGATCATCGTGCTGGCAAATTCGAAGCCAAATTCTTTGACAAGATTCTTCAAGAAGAAATTGGGGGTGTGAAAGGCCACTTTGGACCAATTAATGCATTGGCTTTTAACCCTGATGGAAAAAGTTTTTCAAGTGGAGGTGAAGATGGTTATGTACGGTTGCACCACTTCGACCCAGATTATTTCAACATCAAAATTTAG

>Glyma.09g234100.2 sequence-type=CDS polypeptide=Glyma.09g234100.2.p locus=Glyma.09g234100 ID=Glyma.09g234100.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGAGACCAATTTTGATGAAAGGTCATGAGAGGCCATTGACGTTCCTGAAATACAACAGGGACGGCGATCTCCTCTTCTCCTGCGCCAAGGACCACAACCCAACCGTCTGGTTTGCCGACAATGGCGAACGCTTGGGCACTTATCGCGGCCACAACGGCGCCGTTTGGACCTGCGACGTCTCAAGAGATTCGGTTCGTCTGATCACGGGTAGTGCCGATCAGACCGCCAAGCTATGGGACGTGCAAAGCGGTCTGCAATTGTACACCTTCAATTTCGATTCCCCTGCCAGGTCCGTCGATTTCTCCGTCGGTGATAGGCTGGCCGTTATCACCACCGACCCCTTCATGGAGTTATCCTCTGCAATCCATGTCAAACGCATTGCTGACGATCCAACCGAGCAGAGTGGGGAGTCTCTGCTTCTCATTAAGGGTCCTCTGGGAAGGATAAACAGAGCTATTTGGGGACCCCTCAACAGTACCATTATTAGTGCCGGGGAAGATGCTGTTATTCGTATTTGGGATTCCGAGACCGGAAAACTGCTTAAAGAGTCCGACAAGGAATCTGGCCATAAAAAGACTGTAACTTCGCTTGCCAAGTCTGCCGATGGTTCACATTTCCTTACTGGTTCCCTTGATAAGTCTGCCAGGGTGGTTATTGGAGGTGGTCAGGATGCCTCAGCTGTTACAACTACTGATCATCGTGCTGGCAAATTCGAAGCCAAATTCTTTGACAAGATTCTTCAAGAAGAAATTGGGGGTGTGAAAGGCCACTTTGGACCAATTAATGCATTGGCTTTTAACCCTGATGGAAAAAGTTTTTCAAGTGGAGGTGAAGATGGTTATGTACGGTTGCACCACTTCGACCCAGATTATTTCAACATCAAAATTTAG

>Glyma.09g234100.3 sequence-type=CDS polypeptide=Glyma.09g234100.3.p locus=Glyma.09g234100 ID=Glyma.09g234100.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGAGACCAATTTTGATGAAAGGTCATGAGAGGCCATTGACGTTCCTGAAATACAACAGGGACGGCGATCTCCTCTTCTCCTGCGCCAAGGACCACAACCCAACCGTCTGGTTTGCCGACAATGGCGAACGCTTGGGCACTTATCGCGGCCACAACGGCGCCGTTTGGACCTGCGACGTCTCAAGAGATTCGGTTCGTCTGATCACGGGTAGTGCCGATCAGACCGCCAAGCTATGGGACGTGCAAAGCGGTCTGCAATTGTACACCTTCAATTTCGATTCCCCTGCCAGGTCCGTCGATTTCTCCGTCGGTGATAGGCTGGCCGTTATCACCACCGACCCCTTCATGGAGTTATCCTCTGCAATCCATGTCAAACGCATTGCTGACGATCCAACCGAGCAGAGTGGGGAGTCTCTGCTTCTCATTAAGGGTCCTCTGGGAAGGATAAACAGAGCTATTTGGGGACCCCTCAACAGTACCATTATTAGTGCCGGGGAAGATGCTGTTATTCGTATTTGGGATTCCGAGACCGGAAAACTGCTTAAAGAGTCCGACAAGGAATCTGGCCATAAAAAGACTGTAACTTCGCTTGCCAAGTCTGCCGATGGTTCACATTTCCTTACTGGTTCCCTTGATAAGTCTGCCAGGCTTTGGGATACTAGGTCATTGACTCTTATCAAGACCTATGTCACAGAACGCCCAGTCAATGCAGTTACCATGTCACCTCTTCTTGATCATGTATGTGGTTATTGGAGGTGGTCAGGATGCCTCAGCTGTTACAACTACTGA

Predicted protein sequences of Glyma.09g234100

Limit To All Plant Sequences

>Glyma.09g234100.1.p sequence-type=predicted peptide transcript=Glyma.09g234100.1 locus=Glyma.09g234100 ID=Glyma.09g234100.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MRPILMKGHERPLTFLKYNRDGDLLFSCAKDHNPTVWFADNGERLGTYRGHNGAVWTCDVSRDSVRLITGSADQTAKLWDVQSGLQLYTFNFDSPARSVDFSVGDRLAVITTDPFMELSSAIHVKRIADDPTEQSGESLLLIKGPLGRINRAIWGPLNSTIISAGEDAVIRIWDSETGKLLKESDKESGHKKTVTSLAKSADGSHFLTGSLDKSARLWDTRSLTLIKTYVTERPVNAVTMSPLLDHVVIGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRLHHFDPDYFNIKI*

>Glyma.09g234100.2.p sequence-type=predicted peptide transcript=Glyma.09g234100.2 locus=Glyma.09g234100 ID=Glyma.09g234100.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MRPILMKGHERPLTFLKYNRDGDLLFSCAKDHNPTVWFADNGERLGTYRGHNGAVWTCDVSRDSVRLITGSADQTAKLWDVQSGLQLYTFNFDSPARSVDFSVGDRLAVITTDPFMELSSAIHVKRIADDPTEQSGESLLLIKGPLGRINRAIWGPLNSTIISAGEDAVIRIWDSETGKLLKESDKESGHKKTVTSLAKSADGSHFLTGSLDKSARVVIGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRLHHFDPDYFNIKI*

>Glyma.09g234100.3.p sequence-type=predicted peptide transcript=Glyma.09g234100.3 locus=Glyma.09g234100 ID=Glyma.09g234100.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
MRPILMKGHERPLTFLKYNRDGDLLFSCAKDHNPTVWFADNGERLGTYRGHNGAVWTCDVSRDSVRLITGSADQTAKLWDVQSGLQLYTFNFDSPARSVDFSVGDRLAVITTDPFMELSSAIHVKRIADDPTEQSGESLLLIKGPLGRINRAIWGPLNSTIISAGEDAVIRIWDSETGKLLKESDKESGHKKTVTSLAKSADGSHFLTGSLDKSARLWDTRSLTLIKTYVTERPVNAVTMSPLLDHVCGYWRWSGCLSCYNY*

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