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Report for Sequence Feature Glyma.09g232300

Feature Type:gene_model
Chromosome:Gm09
Start:45546303
stop:45549900
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.09g232300
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G25280.1AT P-loop containing nucleoside triphosphate hydrolases superfamily protein JGI N/AIEA
GO:0006139GO-bp nucleobase-containing compound metabolic process EnsemblGenomesN/AIEA
GO:0006139GO-bp nucleobase-containing compound metabolic process JGI N/AIEA
GO:0006207GO-bp 'de novo' pyrimidine nucleobase biosynthetic process EnsemblGenomesN/AIEA
GO:0006221GO-bp pyrimidine nucleotide biosynthetic process EnsemblGenomesN/AIEA
GO:0016310GO-bp phosphorylation EnsemblGenomesN/AIEA
GO:0046939GO-bp nucleotide phosphorylation EnsemblGenomesN/AIEA
GO:0046940GO-bp nucleoside monophosphate phosphorylation EnsemblGenomesN/AIEA
GO:0005634GO-cc nucleus EnsemblGenomesN/AIEA
GO:0005737GO-cc cytoplasm EnsemblGenomesN/AIEA
GO:0000166GO-mf nucleotide binding EnsemblGenomesN/AIEA
GO:0004127GO-mf cytidylate kinase activity EnsemblGenomesN/AIEA
GO:0005524GO-mf ATP binding EnsemblGenomesN/AIEA
GO:0005524GO-mf ATP binding JGI N/AIEA
GO:0009041GO-mf uridylate kinase activity EnsemblGenomesN/AIEA
GO:0016301GO-mf kinase activity EnsemblGenomesN/AIEA
GO:0016740GO-mf transferase activity EnsemblGenomesN/AIEA
GO:0019205GO-mf nucleobase-containing compound kinase activity EnsemblGenomesN/AIEA
GO:0019205GO-mf nucleobase-containing compound kinase activity JGI N/AIEA
KOG3079 KOG Uridylate kinase/adenylate kinase JGI N/AIEA
PTHR23359Panther NUCLEOTIDE KINASE JGI N/AIEA
PF00406PFAM Adenylate kinase JGI N/AIEA
PWY-5687SoyCyc9 pyrimidine ribonucleotides interconversion Plant Metabolic Network ISS
PWY-7176SoyCyc9 UTP and CTP de novo biosynthesis Plant Metabolic Network ISS
PWY-7184SoyCyc9 pyrimidine deoxyribonucleotides de novo biosynthesis I Plant Metabolic Network ISS
PWY-7187SoyCyc9 pyrimidine deoxyribonucleotides de novo biosynthesis II Plant Metabolic Network ISS
PWY-7196SoyCyc9 superpathway of pyrimidine ribonucleosides salvage Plant Metabolic Network ISS
PWY-7197SoyCyc9 pyrimidine deoxyribonucleotide phosphorylation Plant Metabolic Network ISS
PWY-7205SoyCyc9 CMP phosphorylation Plant Metabolic Network ISS
PWY-7208SoyCyc9 superpathway of pyrimidine nucleobases salvage Plant Metabolic Network ISS
PWY-7211SoyCyc9 superpathway of pyrimidine deoxyribonucleotides de novo biosynthesis Plant Metabolic Network ISS
PWY-7221SoyCyc9 guanosine ribonucleotides de novo biosynthesis Plant Metabolic Network ISS
PWY-7224SoyCyc9 purine deoxyribonucleosides salvage Plant Metabolic Network ISS
PWY-7226SoyCyc9 guanosine deoxyribonucleotides de novo biosynthesis I Plant Metabolic Network ISS
PWY-7227SoyCyc9 adenosine deoxyribonucleotides de novo biosynthesis Plant Metabolic Network ISS
PWY-7228SoyCyc9 superpathway of guanosine nucleotides de novo biosynthesis I Plant Metabolic Network ISS
PWY-7229SoyCyc9 superpathway of adenosine nucleotides de novo biosynthesis I Plant Metabolic Network ISS
PWY-841SoyCyc9 superpathway of purine nucleotides de novo biosynthesis I Plant Metabolic Network ISS
PWY0-162SoyCyc9 superpathway of pyrimidine ribonucleotides de novo biosynthesis Plant Metabolic Network ISS
PWY0-166SoyCyc9 superpathway of pyrimidine deoxyribonucleotides de novo biosynthesis (E. coli) Plant Metabolic Network ISS
GN7V-57478SoyCyc9-rxn nucleoside-diphosphate kinase Plant Metabolic Network ISS

Expression Patterns of Glyma.09g232300
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.09g232300 not represented in the dataset
Glyma.09g232300 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.09g232300
ParalogEvidenceComments
Glyma.12g004200 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.09g232300 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma09g36680 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.09g232300
>Glyma.09g232300.2 sequence-type=transcript locus=Glyma.09g232300 ID=Glyma.09g232300.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
TATTACTAGATGACATTCCAACTCACTCTCTCACCTCTTTCGCAAATCGCTATTTCTTTACTCTTCTCTTTTGCTATTTACAACCACGACTTTCTTCATTTATTCCATATTTTAAGTTTCTGTTTAGTTTTACTTCTCCTCCTTCTTCTTTCCTATCATCTCAACTTATTAGTATCTCTGTTTTTCTGTTTATATAACTCGACTACCGGAGAGCTTACAGTCTTTTCATATTGTTCCCTCTAATGCAGGAAAAGGATGGCATTTGCCCCAAACCGCTTATAACTTTTGTTTTAGGAGGCCCTGGTAGTGGAAAAGGTACACAGTGTGGAAAAATTGTTGAAACCTTTGGATTTAAGCATCTGAGTGCTGGAGATCTTTTGAGAAGGGAGATGGTTTCTGATAGTGAATATGGCTCAATGATTATGAATACAATTGGAGAAGGAAGAATTGTTCCATCAGAAGTGACTGTCAAATTGATTCTAAGAGAGATGGAATCTAGTGACAATCATAAGTTTCTTATCGATGGCTTCCCTAGAAGCCAGGAGAACCGTATAGCTTTTGAACAAATTATTGGAGCTGAACCGCATATGGTACTTTTCTTTGATTGTCCTGAAGAAGAAATGGTGAAACGTGTGCTGAGTCGTAATCAGGGTCGAATTGATGACAACATAAATACAATCAAGAACCGTCTTCAAGTATTTGAGTCATTAAATCTTCCCGTGATTGACTATTATGCTAAGAAAGGGAAACTTTACAGGATCAATGCAGTGGGAACAGTAGATGAAATTTTTGAGCATGTTCGACCAGTTTTTGAGGCATGTGAGCACGAGGCTAGATGATAGCTGTTTGAATTGGATGAGAGCACTGTAAAGTTGGCTAATGTTTGGATTTAGTGGGGACCCATCATAGTTACCAGTTGATTACAGGATCTGATCCGAATTCATAGCTGATTTGCTTTGGAATTTGGTAGATCTCTAAAACTCATCCGCTGAAGTATTTCAAAATGATATTACACATGTCCACCTTTCACAGGAGATGGCTCTTGTTGCCttttttttttttttcttttCCTCCTTATAATGCCTAACGTGCAGTGAGCTTATGGTCCCGAGAGAATGGCCTATAGGTGGAGCAAAACCGTCTCTAGCAACATAGGAAGTGCTTATAATGCGCAGAATATACCATTAGAAGTATCATATGTTGTGTAACtttttttttttttttttttACAATAAATTGAATTCTAAATGTCAGTCCAACCTCTATCTAGAGGAGTAGAGGTGTAAGTGTTGGGCTATATCCTGATTTTTGTCATCGCACAGATATTGTGAACTAGTTGGTCTTTCGCAGTGACCAAGCTAATTAGACACATAATGGTAGAGTTGGAAAGCCTTGGACTAATTTTAGACCCCACTCCCAATTGTTGCATGGAAAACCTTCTCTAGCAAACTTGCTAGTAAGCACTAAGCATTTAATGAATTGAGACC

>Glyma.09g232300.3 sequence-type=transcript locus=Glyma.09g232300 ID=Glyma.09g232300.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
CTCACTTCTCTTGAGTCACCTGAACTGACTTGTTGAGAGAAATAGAAAATGTGGAGGCGTGCAACCCTTTTCCTTCGCGTCCTGGAACCTCCTATACACATCAACGCTTCGCTTTCCCAAACATTTACCACTGGATTCCCCTTCCACTTCCAGGAAAAGGATGGCATTTGCCCCAAACCGCTTATAACTTTTGTTTTAGGAGGCCCTGGTAGTGGAAAAGGTACACAGTGTGGAAAAATTGTTGAAACCTTTGGATTTAAGCATCTGAGTGCTGGAGATCTTTTGAGAAGGGAGATGGTTTCTGATAGTGAATATGGCTCAATGATTATGAATACAATTGGAGAAGGAAGAATTGTTCCATCAGAAGTGACTGTCAAATTGATTCTAAGAGAGATGGAATCTAGTGACAATCATAAGTTTCTTATCGATGGCTTCCCTAGAAGCCAGGAGAACCGTATAGCTTTTGAACAAATTATTGGAGCTGAACCGCATATGGTACTTTTCTTTGATTGTCCTGAAGAAGAAATGGTGAAACGTGTGCTGAGTCGTAATCAGGGTCGAATTGATGACAACATAAATACAATCAAGAACCGTCTTCAAGTATTTGAGTCATTAAATCTTCCCGTGATTGACTATTATGCTAAGAAAGGGAAACTTTACAGGATCAATGCAGTGGGAACAGTAGATGAAATTTTTGAGCATGTTCGACCAGTTTTTGAGGCATGTGAGTTTTAACTTTTTAAGTGGGTGTGAAAAGGAGAAATCCAAAACACCATATTTGTC
Coding sequences of Glyma.09g232300
>Glyma.09g232300.1 sequence-type=CDS polypeptide=Glyma.09g232300.1.p locus=Glyma.09g232300 ID=Glyma.09g232300.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGTGGAGGCGTGCAACCCTTTTCCTTCGCGTCCTGGAACCTCCTATACACATCAACGCTTCGCTTTCCCAAACATTTACCACTGGATTCCCCTTCCACTTCCAGGAAAAGGATGGCATTTGCCCCAAACCGCTTATAACTTTTGTTTTAGGAGGCCCTGGTAGTGGAAAAGGTACACAGTGTGGAAAAATTGTTGAAACCTTTGGATTTAAGCATCTGAGTGCTGGAGATCTTTTGAGAAGGGAGATGGTTTCTGATAGTGAATATGGCTCAATGATTATGAATACAATTGGAGAAGGAAGAATTGTTCCATCAGAAGTGACTGTCAAATTGATTCTAAGAGAGATGGAATCTAGTGACAATCATAAGTTTCTTATCGATGGCTTCCCTAGAAGCCAGGAGAACCGTATAGCTTTTGAACAAATTATTGGAGCTGAACCGCATATGGTACTTTTCTTTGATTGTCCTGAAGAAGAAATGGTGAAACGTGTGCTGAGTCGTAATCAGGGTCGAATTGATGACAACATAAATACAATCAAGAACCGTCTTCAAGTATTTGAGTCATTAAATCTTCCCGTGATTGACTATTATGCTAAGAAAGGGAAACTTTACAGGATCAATGCAGTGGGAACAGTAGATGAAATTTTTGAGCATGTTCGACCAGTTTTTGAGGCATGTGAGCACGAGGCTAGATGA

>Glyma.09g232300.2 sequence-type=CDS polypeptide=Glyma.09g232300.2.p locus=Glyma.09g232300 ID=Glyma.09g232300.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGCAGGAAAAGGATGGCATTTGCCCCAAACCGCTTATAACTTTTGTTTTAGGAGGCCCTGGTAGTGGAAAAGGTACACAGTGTGGAAAAATTGTTGAAACCTTTGGATTTAAGCATCTGAGTGCTGGAGATCTTTTGAGAAGGGAGATGGTTTCTGATAGTGAATATGGCTCAATGATTATGAATACAATTGGAGAAGGAAGAATTGTTCCATCAGAAGTGACTGTCAAATTGATTCTAAGAGAGATGGAATCTAGTGACAATCATAAGTTTCTTATCGATGGCTTCCCTAGAAGCCAGGAGAACCGTATAGCTTTTGAACAAATTATTGGAGCTGAACCGCATATGGTACTTTTCTTTGATTGTCCTGAAGAAGAAATGGTGAAACGTGTGCTGAGTCGTAATCAGGGTCGAATTGATGACAACATAAATACAATCAAGAACCGTCTTCAAGTATTTGAGTCATTAAATCTTCCCGTGATTGACTATTATGCTAAGAAAGGGAAACTTTACAGGATCAATGCAGTGGGAACAGTAGATGAAATTTTTGAGCATGTTCGACCAGTTTTTGAGGCATGTGAGCACGAGGCTAGATGA

>Glyma.09g232300.3 sequence-type=CDS polypeptide=Glyma.09g232300.3.p locus=Glyma.09g232300 ID=Glyma.09g232300.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGTGGAGGCGTGCAACCCTTTTCCTTCGCGTCCTGGAACCTCCTATACACATCAACGCTTCGCTTTCCCAAACATTTACCACTGGATTCCCCTTCCACTTCCAGGAAAAGGATGGCATTTGCCCCAAACCGCTTATAACTTTTGTTTTAGGAGGCCCTGGTAGTGGAAAAGGTACACAGTGTGGAAAAATTGTTGAAACCTTTGGATTTAAGCATCTGAGTGCTGGAGATCTTTTGAGAAGGGAGATGGTTTCTGATAGTGAATATGGCTCAATGATTATGAATACAATTGGAGAAGGAAGAATTGTTCCATCAGAAGTGACTGTCAAATTGATTCTAAGAGAGATGGAATCTAGTGACAATCATAAGTTTCTTATCGATGGCTTCCCTAGAAGCCAGGAGAACCGTATAGCTTTTGAACAAATTATTGGAGCTGAACCGCATATGGTACTTTTCTTTGATTGTCCTGAAGAAGAAATGGTGAAACGTGTGCTGAGTCGTAATCAGGGTCGAATTGATGACAACATAAATACAATCAAGAACCGTCTTCAAGTATTTGAGTCATTAAATCTTCCCGTGATTGACTATTATGCTAAGAAAGGGAAACTTTACAGGATCAATGCAGTGGGAACAGTAGATGAAATTTTTGAGCATGTTCGACCAGTTTTTGAGGCATGTGAGTTTTAA
Predicted protein sequences of Glyma.09g232300
>Glyma.09g232300.1.p sequence-type=predicted peptide transcript=Glyma.09g232300.1 locus=Glyma.09g232300 ID=Glyma.09g232300.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MWRRATLFLRVLEPPIHINASLSQTFTTGFPFHFQEKDGICPKPLITFVLGGPGSGKGTQCGKIVETFGFKHLSAGDLLRREMVSDSEYGSMIMNTIGEGRIVPSEVTVKLILREMESSDNHKFLIDGFPRSQENRIAFEQIIGAEPHMVLFFDCPEEEMVKRVLSRNQGRIDDNINTIKNRLQVFESLNLPVIDYYAKKGKLYRINAVGTVDEIFEHVRPVFEACEHEAR*

>Glyma.09g232300.2.p sequence-type=predicted peptide transcript=Glyma.09g232300.2 locus=Glyma.09g232300 ID=Glyma.09g232300.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MQEKDGICPKPLITFVLGGPGSGKGTQCGKIVETFGFKHLSAGDLLRREMVSDSEYGSMIMNTIGEGRIVPSEVTVKLILREMESSDNHKFLIDGFPRSQENRIAFEQIIGAEPHMVLFFDCPEEEMVKRVLSRNQGRIDDNINTIKNRLQVFESLNLPVIDYYAKKGKLYRINAVGTVDEIFEHVRPVFEACEHEAR*

>Glyma.09g232300.3.p sequence-type=predicted peptide transcript=Glyma.09g232300.3 locus=Glyma.09g232300 ID=Glyma.09g232300.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
MWRRATLFLRVLEPPIHINASLSQTFTTGFPFHFQEKDGICPKPLITFVLGGPGSGKGTQCGKIVETFGFKHLSAGDLLRREMVSDSEYGSMIMNTIGEGRIVPSEVTVKLILREMESSDNHKFLIDGFPRSQENRIAFEQIIGAEPHMVLFFDCPEEEMVKRVLSRNQGRIDDNINTIKNRLQVFESLNLPVIDYYAKKGKLYRINAVGTVDEIFEHVRPVFEACEF*






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