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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A previous version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G64970.1 | AT | gamma-tocopherol methyltransferase | JGI | N/A | IEA |
| GO:0008152 | GO-bp | metabolic process | EnsemblGenomes | N/A | IEA |
| GO:0008152 | GO-bp | metabolic process | JGI | N/A | IEA |
| GO:0008610 | GO-bp | lipid biosynthetic process | JGI | N/A | IEA |
| GO:0010189 | GO-bp | vitamin E biosynthetic process | EnsemblGenomes | N/A | IEA |
| GO:0032259 | GO-bp | methylation | EnsemblGenomes | N/A | IEA |
| GO:0008168 | GO-mf | methyltransferase activity | EnsemblGenomes | N/A | IEA |
| GO:0008168 | GO-mf | methyltransferase activity | JGI | N/A | IEA |
| GO:0016740 | GO-mf | transferase activity | EnsemblGenomes | N/A | IEA |
| GO:0051741 | GO-mf | 2-methyl-6-phytyl-1,4-benzoquinone methyltransferase activity | EnsemblGenomes | N/A | IEA |
| KOG1269 | KOG | SAM-dependent methyltransferases | JGI | N/A | IEA |
| PTHR10108 | Panther | METHYLTRANSFERASE | JGI | N/A | IEA |
| PTHR10108:SF217 | Panther | JGI | N/A | IEA | |
| PF08241 | PFAM | Methyltransferase domain | JGI | N/A | IEA |
| PWY-1422 | SoyCyc9 | vitamin E biosynthesis (tocopherols) | Plant Metabolic Network | ISS | |
| GN7V-50623 | SoyCyc9-rxn | tocopherol O-methyltransferase | Plant Metabolic Network | ISS |
| Locus | Gene Symbol | Protein Name |
|---|---|---|
| GAMMA-TMT | gamma-tocopherol methyltransferase |
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Glyma.09g222800 not represented in the dataset |
Glyma.09g222800 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.
Gene information in GlycineMine developed by LIS.
Gene families from PhyloGenes.
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma.12g014200 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma09g35680 | Wm82.a1.v1.1 | IGC | As supplied by JGI |
>Glyma.09g222800.1 sequence-type=CDS polypeptide=Glyma.09g222800.1.p locus=Glyma.09g222800 ID=Glyma.09g222800.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGTCGGTGGAGCAGAAAGCAGCAGGGAAGGAGGAGGAGGGAAAACTGCAGAAGGGAATTGCAGAGTTCTACGACGAGTCGTCTGGCATATGGGAGAACATTTGGGGCGATCACATGCACCACGGCTTTTATGACCCGGATTCCACCGTTTCTGTTTCTGATCATCGCGCTGCTCAGATCCGAATGATCCAAGAATCTCTTCGTTTTGCCTCTCTGCTTTCTGAGAACCCTTCTAAATGGCCCAAGAGTATAGTTGATGTTGGGTGTGGCATAGGGGGCAGCTCCAGATACCTGGCCAAGAAATTTGGAGCAACGAGCGTAGGCATTACTCTGAGTCCTGTTCAAGCTCAAAGAGCAAATTCTCTTGCTGCTGCTCAAGGATTGGCTGACAAGGTTTCCTTTGAGGTTGCTGACGCCCTAAAGCAACCATTCCCTGACGGGAAGTTTGATCTGGTATGGTCCATGGAGAGTGGAGAGCATATGCCTGACAAAGCTAAGTTTGTTGGAGAATTAGCTCGGGTAGCAGCACCAGGTGGCACCATAATAATAGTAACATGGTGCCACAGGGATCTTGGCCCTGATGAACAATCCCTACTTCCATGGGAGCAAGATCTCTTGAAGAAGATTTGCGATTCATATTACCTTCCAGCTTGGTGCTCAACTTCTGATTATGTTAAGTTGCTGGAATCCCTGTCCCTTCAGGACATTAAATCAGCAGATTGGTCTCCCTTTGTTGCTCCATTTTGGCCAGCAGTGATACGCACCGCCCTGACCTGGAATGGCCTCACTTCACTCTTGCGCAGTGGACTTAAAACCATAAAGGGAGCTTTGGCTATGCCATTGATGATAAAAGGATACAAGAAGGATCTGATTAAGTTTAGCATCATTACATGTCGGAAGCCTGAATAA
>Glyma.09g222800.1.p sequence-type=predicted peptide transcript=Glyma.09g222800.1 locus=Glyma.09g222800 ID=Glyma.09g222800.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 MSVEQKAAGKEEEGKLQKGIAEFYDESSGIWENIWGDHMHHGFYDPDSTVSVSDHRAAQIRMIQESLRFASLLSENPSKWPKSIVDVGCGIGGSSRYLAKKFGATSVGITLSPVQAQRANSLAAAQGLADKVSFEVADALKQPFPDGKFDLVWSMESGEHMPDKAKFVGELARVAAPGGTIIIVTWCHRDLGPDEQSLLPWEQDLLKKICDSYYLPAWCSTSDYVKLLESLSLQDIKSADWSPFVAPFWPAVIRTALTWNGLTSLLRSGLKTIKGALAMPLMIKGYKKDLIKFSIITCRKPE*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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