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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A previous version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT2G16570.1 | AT | GLN phosphoribosyl pyrophosphate amidotransferase 1 | JGI | N/A | IEA |
| GO:0006164 | GO-bp | purine nucleotide biosynthetic process | EnsemblGenomes | N/A | IEA |
| GO:0006189 | GO-bp | 'de novo' IMP biosynthetic process | EnsemblGenomes | N/A | IEA |
| GO:0008152 | GO-bp | metabolic process | JGI | N/A | IEA |
| GO:0009113 | GO-bp | purine nucleobase biosynthetic process | EnsemblGenomes | N/A | IEA |
| GO:0009116 | GO-bp | nucleoside metabolic process | EnsemblGenomes | N/A | IEA |
| GO:0009116 | GO-bp | nucleoside metabolic process | JGI | N/A | IEA |
| GO:0004044 | GO-mf | amidophosphoribosyltransferase activity | EnsemblGenomes | N/A | IEA |
| GO:0016740 | GO-mf | transferase activity | EnsemblGenomes | N/A | IEA |
| GO:0016757 | GO-mf | transferase activity, transferring glycosyl groups | EnsemblGenomes | N/A | IEA |
| GO:0046872 | GO-mf | metal ion binding | EnsemblGenomes | N/A | IEA |
| GO:0051536 | GO-mf | iron-sulfur cluster binding | EnsemblGenomes | N/A | IEA |
| KOG0572 | KOG | Glutamine phosphoribosylpyrophosphate amidotransferase | JGI | N/A | IEA |
| PTHR11907 | Panther | AMIDOPHOSPHORIBOSYLTRANSFERASE | JGI | N/A | IEA |
| PF00156 | PFAM | Phosphoribosyl transferase domain | JGI | N/A | IEA |
| PF00310 | PFAM | Glutamine amidotransferases class-II | JGI | N/A | IEA |
| PWY-6121 | SoyCyc9 | 5-aminoimidazole ribonucleotide biosynthesis I | Plant Metabolic Network | ISS | |
| PWY-841 | SoyCyc9 | superpathway of purine nucleotides de novo biosynthesis I | Plant Metabolic Network | ISS | |
| GN7V-46779 | SoyCyc9-rxn | amidophosphoribosyltransferase | Plant Metabolic Network | ISS |
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Glyma.09g222600 not represented in the dataset |
Glyma.09g222600 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.
Gene information in GlycineMine developed by LIS.
Gene families from PhyloGenes.
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma09g35660 | Wm82.a1.v1.1 | IGC | As supplied by JGI |
>Glyma.09g222600.1 sequence-type=CDS polypeptide=Glyma.09g222600.1.p locus=Glyma.09g222600 ID=Glyma.09g222600.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGGCCTTAGCAGTAGCAGCACCCACTCTATCATCTTTCCTTTCCAAACCGTCTTCACTCCTTTTCTACACTCACCCTTTCCCCAAAACCCCCACTCTCCCTCTCCAGCTCGTTTTCTCCAAAAACCCGATTTCCGATACTGTGGGAAGCTACGACGATGATAAGCCGCGCGAGGAATGCGGCGTGGTTGGCATATACGGTGACCCGGAGGCCTCGCGGCTCTGCTACCTTGCCCTGCATGCGCTCCAGCATCGCGGCCAAGAAGGCGCCGGAATCGTAACCGTCCACAACAATGTCCTCCAACCACCCATCACTGGCATGGGCCTGGTCTCCGAAGTTTTCAACCAATCAAAGCTTGACCAGCTCCCTGGCAACCTCGCCATCGGCCACGTCCGCTACTCCACCGCCGGCCAGTCCATGCTCAAAAACGTCCAGCCCTTCGTCGCCGGCTACCGCTTCGGCTCCGTCGGCCTGGCCCACAACGGCAACCTCGTCAACTATAAGACTCTCCGAACCAACCTCGAGGACAGCGGCTCCATCTTCAACACCTCCTCCGACACCGAGGTTGTCCTCCACCTCATCGCCACCTCCAAACACGGACCCTTCATTCTGCGAGTTGTTGACGCCTGTGAAAAGCTAAAAGGGGCTTATTCTTTTGTCTTCGTCACCGAGGACAAACTTGTCGCCGTGCGCGACCCTTTCGGGTTCAGGCCTTTGGTTATGGGAAGGAGGAGAAGCAACGGTGCCGTAGTTTTCACTTCTGAAACTTGTGCTCTTGACCTAATTGAAGCGACTTATGAGAGGGAGGTTTACCCTGGTGAGGTTATCGTGGTGGATAAAAACGGTATTCAGAGTATGCAGCTCATGTCGTCTTCTCATCCGAAACAACAGTGCATATTTGAACATGTTTACTTTTCGCGGCCGAATTCAGTTGTCTTTGGGAGGTCTGTGTATGAGACTCGTAGAAAATTCGGGGAGATTTTGGCTACTGAGAGTCCCGTGGAAGAGTGTGATGTTGTGATTGCTGTGCCTGATTCTGGTGTTGTGTCAGCGATTGGTTTTGCTGCAAAAGCTGGAGTTCCCTACGAGGTGGGTTTGATTAGGTCACAAAATGTGGCGAGGACTTTCATTGCCCCATCACAGGAGATTAGGGACATTGGTGTGAAGCTGAAGCTATGGCCAGTTCGTGCAGTGCTAGAAGGTAAAAGTGTTACGGTTGTGGATGATTCCATTGTGAGAGGAACAACCTCGTCCAAGATTGTTAGGTTGTTGAGAGAGGCAGGTGCTAAGGAAGTTCACATGAGGATTGCGAGTCCTCCCATAATTGCTTCCTGTTATTATGGAGTGGATACTCCCAATTCTCAAGAGCTCATATCGAGTAAGATGAGTGTGGAGGAGATAAGAGACTTTATTGGGGCGGATTCACTTGCCTTTTTGTCCTTTGATAGCTTGAAGACCTTGTTGGGAACTCAGAGTCCCAATTTTTGTTATGCTTGTTTCTCTGGGAATTACCCTCTGGATCCTAGTGAGACTTAA
>Glyma.09g222600.1.p sequence-type=predicted peptide transcript=Glyma.09g222600.1 locus=Glyma.09g222600 ID=Glyma.09g222600.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 MALAVAAPTLSSFLSKPSSLLFYTHPFPKTPTLPLQLVFSKNPISDTVGSYDDDKPREECGVVGIYGDPEASRLCYLALHALQHRGQEGAGIVTVHNNVLQPPITGMGLVSEVFNQSKLDQLPGNLAIGHVRYSTAGQSMLKNVQPFVAGYRFGSVGLAHNGNLVNYKTLRTNLEDSGSIFNTSSDTEVVLHLIATSKHGPFILRVVDACEKLKGAYSFVFVTEDKLVAVRDPFGFRPLVMGRRRSNGAVVFTSETCALDLIEATYEREVYPGEVIVVDKNGIQSMQLMSSSHPKQQCIFEHVYFSRPNSVVFGRSVYETRRKFGEILATESPVEECDVVIAVPDSGVVSAIGFAAKAGVPYEVGLIRSQNVARTFIAPSQEIRDIGVKLKLWPVRAVLEGKSVTVVDDSIVRGTTSSKIVRLLREAGAKEVHMRIASPPIIASCYYGVDTPNSQELISSKMSVEEIRDFIGADSLAFLSFDSLKTLLGTQSPNFCYACFSGNYPLDPSET*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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