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Report for Sequence Feature Glyma.09g214900

Feature Type:gene_model
Chromosome:Gm09
Start:43807372
stop:43808823
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.09g214900
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G11760.1AT JGI N/AIEA
GO:0006355GO-bp regulation of transcription, DNA-templated EnsemblGenomesN/AIEA
GO:0009631GO-bp cold acclimation EnsemblGenomesN/AIEA
GO:0010150GO-bp leaf senescence EnsemblGenomesN/AIEA
GO:0048364GO-bp root development EnsemblGenomesN/AIEA
GO:0016592GO-cc mediator complex EnsemblGenomesN/AIEA
PTHR21528Panther UNCHARACTERIZED JGI N/AIEA

Proteins Associated with Glyma.09g214900
LocusGene SymbolProtein Name
MED2-2 Mediator Complex 2 gene 2

Expression Patterns of Glyma.09g214900
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.09g214900
ParalogEvidenceComments
Glyma.04g123300 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.09g214900 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma09g34810 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.09g214900
>Glyma.09g214900.2 sequence-type=transcript locus=Glyma.09g214900 ID=Glyma.09g214900.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
AGAAAGGGGGTTTCTTTCATTTCAGATTTGGTTAATTAGGGTTCCGTTGGCGCGAGCTAAGAACGAACGAAGTAGAAGCAGCAAAACCCAATCAAAGACCCTCACTCTCACCCCACACTTCACGCACCATGGACAGCATAGTTGATTCTCTGAATAATGCCTATCAAGATTTTGTTGTTGCAGCAGCAAATGTGTTGGAAGCCAAAGAAAATGCTGGTTCCATTAAAACAACAGCAACCGATACTGCTCTAGAAAACTTTAAGCAGAAGTGGGAATTGTTTAGAGTAGCATGTGATCAAGCTGAGGAGTTTGTGGAGTCTGTGAAGCAAAGGATAGGATCCGAGTGTCTGGTGGATGAGGCAACAAGGCCTGTAGCAGGAAAACCTGGACAAGCTACCATGACTGGTCTTCCTCCCATCAGTGCAGTTCGGTTGGAACAGATGAGTAAAGCAGTTCGATGGCTTGTGATTGAATTGCAGCATGGCTCTGGAGCTGGTTCTGCTAATTCAGCTCTTACCCACCCCTCAGCTCAGTTTGATGCCAGGTTTTCTGAAGATGCTGCTCAGTAGCATTAACGTGACTGTGATGATTAATGTTATATATTTTTTCTCTATGTTGATCGTGCTTAGACTATATTG
Coding sequences of Glyma.09g214900
>Glyma.09g214900.1 sequence-type=CDS polypeptide=Glyma.09g214900.1.p locus=Glyma.09g214900 ID=Glyma.09g214900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGACAGCATAGTTGATTCTCTGAATAATGCCTATCAAGATTTTGTTGTTGCAGCAGCAAATGTGTTGGAAGCCAAAGAAAATGCTGGTTCCATTAAAACAACAGCAACCGATACTGCTCTAGAAAACTTTAAGCAGAAGTGGGAATTGTTTAGAGTAGCATGTGATCAAGCTGAGGAGTTTGTGGAGTCTGTGAAGCAAAGGATAGGATCCGAGTGTCTGGTGGATGAGGCAACAAGGCCTGTAGCAGGAAAACCTGGACAAGCTACCATGACTGGTCTTCCTCCCATCAGTGCAGTTCGGTTGGAACAGATGAGTAAAGCAGTTCGATGGCTTGTGATTGAATTGCAGCATGGCTCTGGAGCTGGTTCTGCTAATTCAGCTCTTACCCACCCCTCAGCTCAGTTTGATGCCAGGTTTTCTGAAGATGCTGCTCAGTAG

>Glyma.09g214900.2 sequence-type=CDS polypeptide=Glyma.09g214900.2.p locus=Glyma.09g214900 ID=Glyma.09g214900.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGACAGCATAGTTGATTCTCTGAATAATGCCTATCAAGATTTTGTTGTTGCAGCAGCAAATGTGTTGGAAGCCAAAGAAAATGCTGGTTCCATTAAAACAACAGCAACCGATACTGCTCTAGAAAACTTTAAGCAGAAGTGGGAATTGTTTAGAGTAGCATGTGATCAAGCTGAGGAGTTTGTGGAGTCTGTGAAGCAAAGGATAGGATCCGAGTGTCTGGTGGATGAGGCAACAAGGCCTGTAGCAGGAAAACCTGGACAAGCTACCATGACTGGTCTTCCTCCCATCAGTGCAGTTCGGTTGGAACAGATGAGTAAAGCAGTTCGATGGCTTGTGATTGAATTGCAGCATGGCTCTGGAGCTGGTTCTGCTAATTCAGCTCTTACCCACCCCTCAGCTCAGTTTGATGCCAGGTTTTCTGAAGATGCTGCTCAGTAG
Predicted protein sequences of Glyma.09g214900
>Glyma.09g214900.1.p sequence-type=predicted peptide transcript=Glyma.09g214900.1 locus=Glyma.09g214900 ID=Glyma.09g214900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MDSIVDSLNNAYQDFVVAAANVLEAKENAGSIKTTATDTALENFKQKWELFRVACDQAEEFVESVKQRIGSECLVDEATRPVAGKPGQATMTGLPPISAVRLEQMSKAVRWLVIELQHGSGAGSANSALTHPSAQFDARFSEDAAQ*

>Glyma.09g214900.2.p sequence-type=predicted peptide transcript=Glyma.09g214900.2 locus=Glyma.09g214900 ID=Glyma.09g214900.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MDSIVDSLNNAYQDFVVAAANVLEAKENAGSIKTTATDTALENFKQKWELFRVACDQAEEFVESVKQRIGSECLVDEATRPVAGKPGQATMTGLPPISAVRLEQMSKAVRWLVIELQHGSGAGSANSALTHPSAQFDARFSEDAAQ*






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