Glyma.09g209600

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Report for Sequence Feature Glyma.09g209600

Feature Type:	gene_model
Chromosome:	Gm09
Start:	43392184
stop:	43395506
Source:	JGI
Version:	Wm82.a2.v1
High confidence:	yes

A previous version of this gene model can be found here:

Annotations for Glyma.09g209600

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G19003.1	AT	E2F/DP family winged-helix DNA-binding domain	JGI	N/A	IEA
GO:0043328	GO-bp	protein transport to vacuole involved in ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway	EnsemblGenomes	N/A	IEA
GO:0071985	GO-bp	multivesicular body sorting pathway	EnsemblGenomes	N/A	IEA
GO:0000814	GO-cc	ESCRT II complex	EnsemblGenomes	N/A	IEA
GO:0005198	GO-mf	structural molecule activity	EnsemblGenomes	N/A	IEA
GO:0042803	GO-mf	protein homodimerization activity	EnsemblGenomes	N/A	IEA
KOG4068	KOG	Uncharacterized conserved protein	JGI	N/A	IEA
PTHR13149	Panther	VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN VPS25	JGI	N/A	IEA
PF05871	PFAM	ESCRT-II complex subunit	JGI	N/A	IEA

Expression Patterns of Glyma.09g209600

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.09g209600 not represented in the dataset	Glyma.09g209600 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.

Gene information in GlycineMine developed by LIS.

Related Plant Genes

Gene families from PhyloGenes.

Paralogs of Glyma.09g209600

Paralog	Evidence	Comments
Glyma.01g011400	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.09g209600 Gene Call Version Wm82.a2.v1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma09g34270	Wm82.a1.v1.1	IGC	As supplied by JGI

Transcripts of Glyma.09g209600

Limit To All Plant Sequences

>Glyma.09g209600.2 sequence-type=transcript locus=Glyma.09g209600 ID=Glyma.09g209600.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
AAACGCTGTCGTTTCAATTTGCTTTCTCATCGGTGGTCTTCTTCGTCCGTCGTGATTGTGTTAGGGTTCGCAAAATTGCAGCTTCCCTTCACAGTTTTCGTCCCGAAAAATCCATAGTATCGCGTGACACGCATTGAAGCACTTGAAAGATGCAGAAATTGGGAGAGTTTAAATTACCACCTTTCTTCAATTACCCACCTTACTTCACTTTGCAGCCAGTCAGAGACACAAGAGAGAAGCAGATACAGCTATGGAAAGATCTTATTTTAGATTTTTGTAAAACACAGAAGATATTTATAATTGGGCTTGAAGAAGAATTTCCACTATTTACAAATCATGGAATTGAAAGGTCTCTTACTCATGAAGCCAGAGAAGCTTTCCTTTCAGCATTAGTGTCTGAAGGGCGTGCAGAATGGATGGATAAAGGACATAGGAAATGTCTTATTCTCTGGCATCGGATTCAAGATTGGGCTGATATTTTAATACAGTTTGCAAAAGATAATGGGCTGGAAGATGGTGTTGTCACAATAGAAGAAATACGATCAGGCACTGAATCTCAAGGAACAGATCTTCATGGAATAGATCGAACTATTTTGAATCGAGCACTGAAACTATTAGAACAGAAGGGAAAGCTTGTGGTCTTTAAAGGAACTTCAACTGATGATGAAGGAGTTAAATTTTCTTTATAATTGTTTTGTGTATTAATCTATTGAATCTTGGGGGATTTTACATATGTAACCAACAGGGGAATCTTTTGCTATCTACTTGATGAGTTTGTTGATGTGCAAGGTGTGTAAGAACCAGCTGTAGTAAATTGCTATCAATTTTCATTTCGGGAGCTTTGCTGTGTTAAGTGCTTAGCTTTGTGGCTATTGTAGTTAAATTAGTGAAACTACGCTCCCTGTGAAATCATGAAATTCGTAAATAGGAGGGGTTCCAACGTGCCAAAAGCTATCCTAGTATCAAACATTGATATTATTAAAAATAATGAAGTTGCTTCTGTGTCA

>Glyma.09g209600.3 sequence-type=transcript locus=Glyma.09g209600 ID=Glyma.09g209600.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
GATTGTGTTAGGGTTCGCAAAATTGCAGCTTCCCTTCACAGTTTTCGTCCCGAAAAATCCATAGTATCGCGTGACACGGCTGTTAATCTCTGTGCATAGCATTGAAGCACTTGAAAGATGCAGAAATTGGGAGAGTTTAAATTACCACCTTTCTTCAATTACCCACCTTACTTCACTTTGCAGCCAGTCAGAGACACAAGAGAGAAGCAGATACAGCTATGGAAAGATCTTATTTTAGATTTTTGTAAAACACAGAAGATATTTATAATTGGGCTTGAAGAAGAATTTCCACTATTTACAAATCATGGAATTGAAAGGTCTCTTACTCATGAAGCCAGAGAAGCTTTCCTTTCAGCATTAGTGTCTGAAGGGCGTGCAGAATGGATGGATAAAGGACATAGGAAATGTCTTATTCTCTGGCATCGGATTCAAGATTGGGCTGATATTTTAATACAGTTTGCAAAAGATAATGGGCTGGAAGATGGTGTTGTCACAATAGAAGAAATACGATCAGGCACTGAATCTCAAGGAACAGATCTTCATGGAATAGATCGAACTATTTTGAATCGAGCACTGAAACTATTAGAACAGAAGGGAAAGCTTGTGGTCTTTAAAGGAACTTCAACTGATGATGAAGGAGTTAAATTTTCTTTATAATTGTTTTGTGTATTAATCTATTGAATCTTGGGGGATTTTACATATGTAACCAACAGGGGAATCTTTTGCTATCTACTTGATGAGTTTGTTGATGTGCAAGGTGTGTAAGAACCAGCTGTAGTAAATTGCTATCAATTTTCATTTCGGGAGCTTTGCTGTGTTAAGTGCTTAGCTTTGTGGCTATTGTAGTTAAATTAGTGAAACTACGCTCCCTGTGAAATCATGAAATTCGTAAATAGGAGGGGTTCCAACGTGCCAAAAGCTATCCTAGTATCAAACATTGATATTATTAAAAATAATGAAGTTGCTTCTGTGTC

Coding sequences of Glyma.09g209600

Limit To All Plant Sequences

>Glyma.09g209600.1 sequence-type=CDS polypeptide=Glyma.09g209600.1.p locus=Glyma.09g209600 ID=Glyma.09g209600.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGCAGAAATTGGGAGAGTTTAAATTACCACCTTTCTTCAATTACCCACCTTACTTCACTTTGCAGCCAGTCAGAGACACAAGAGAGAAGCAGATACAGCTATGGAAAGATCTTATTTTAGATTTTTGTAAAACACAGAAGATATTTATAATTGGGCTTGAAGAAGAATTTCCACTATTTACAAATCATGGAATTGAAAGGTCTCTTACTCATGAAGCCAGAGAAGCTTTCCTTTCAGCATTAGTGTCTGAAGGGCGTGCAGAATGGATGGATAAAGGACATAGGAAATGTCTTATTCTCTGGCATCGGATTCAAGATTGGGCTGATATTTTAATACAGTTTGCAAAAGATAATGGGCTGGAAGATGGTGTTGTCACAATAGAAGAAATACGATCAGGCACTGAATCTCAAGGAACAGATCTTCATGGAATAGATCGAACTATTTTGAATCGAGCACTGAAACTATTAGAACAGAAGGGAAAGCTTGTGGTCTTTAAAGGAACTTCAACTGATGATGAAGGAGTTAAATTTTCTTTATAA

>Glyma.09g209600.2 sequence-type=CDS polypeptide=Glyma.09g209600.2.p locus=Glyma.09g209600 ID=Glyma.09g209600.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGCAGAAATTGGGAGAGTTTAAATTACCACCTTTCTTCAATTACCCACCTTACTTCACTTTGCAGCCAGTCAGAGACACAAGAGAGAAGCAGATACAGCTATGGAAAGATCTTATTTTAGATTTTTGTAAAACACAGAAGATATTTATAATTGGGCTTGAAGAAGAATTTCCACTATTTACAAATCATGGAATTGAAAGGTCTCTTACTCATGAAGCCAGAGAAGCTTTCCTTTCAGCATTAGTGTCTGAAGGGCGTGCAGAATGGATGGATAAAGGACATAGGAAATGTCTTATTCTCTGGCATCGGATTCAAGATTGGGCTGATATTTTAATACAGTTTGCAAAAGATAATGGGCTGGAAGATGGTGTTGTCACAATAGAAGAAATACGATCAGGCACTGAATCTCAAGGAACAGATCTTCATGGAATAGATCGAACTATTTTGAATCGAGCACTGAAACTATTAGAACAGAAGGGAAAGCTTGTGGTCTTTAAAGGAACTTCAACTGATGATGAAGGAGTTAAATTTTCTTTATAA

>Glyma.09g209600.3 sequence-type=CDS polypeptide=Glyma.09g209600.3.p locus=Glyma.09g209600 ID=Glyma.09g209600.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGCAGAAATTGGGAGAGTTTAAATTACCACCTTTCTTCAATTACCCACCTTACTTCACTTTGCAGCCAGTCAGAGACACAAGAGAGAAGCAGATACAGCTATGGAAAGATCTTATTTTAGATTTTTGTAAAACACAGAAGATATTTATAATTGGGCTTGAAGAAGAATTTCCACTATTTACAAATCATGGAATTGAAAGGTCTCTTACTCATGAAGCCAGAGAAGCTTTCCTTTCAGCATTAGTGTCTGAAGGGCGTGCAGAATGGATGGATAAAGGACATAGGAAATGTCTTATTCTCTGGCATCGGATTCAAGATTGGGCTGATATTTTAATACAGTTTGCAAAAGATAATGGGCTGGAAGATGGTGTTGTCACAATAGAAGAAATACGATCAGGCACTGAATCTCAAGGAACAGATCTTCATGGAATAGATCGAACTATTTTGAATCGAGCACTGAAACTATTAGAACAGAAGGGAAAGCTTGTGGTCTTTAAAGGAACTTCAACTGATGATGAAGGAGTTAAATTTTCTTTATAA

Predicted protein sequences of Glyma.09g209600

Limit To All Plant Sequences

>Glyma.09g209600.1.p sequence-type=predicted peptide transcript=Glyma.09g209600.1 locus=Glyma.09g209600 ID=Glyma.09g209600.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MQKLGEFKLPPFFNYPPYFTLQPVRDTREKQIQLWKDLILDFCKTQKIFIIGLEEEFPLFTNHGIERSLTHEAREAFLSALVSEGRAEWMDKGHRKCLILWHRIQDWADILIQFAKDNGLEDGVVTIEEIRSGTESQGTDLHGIDRTILNRALKLLEQKGKLVVFKGTSTDDEGVKFSL*

>Glyma.09g209600.2.p sequence-type=predicted peptide transcript=Glyma.09g209600.2 locus=Glyma.09g209600 ID=Glyma.09g209600.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MQKLGEFKLPPFFNYPPYFTLQPVRDTREKQIQLWKDLILDFCKTQKIFIIGLEEEFPLFTNHGIERSLTHEAREAFLSALVSEGRAEWMDKGHRKCLILWHRIQDWADILIQFAKDNGLEDGVVTIEEIRSGTESQGTDLHGIDRTILNRALKLLEQKGKLVVFKGTSTDDEGVKFSL*

>Glyma.09g209600.3.p sequence-type=predicted peptide transcript=Glyma.09g209600.3 locus=Glyma.09g209600 ID=Glyma.09g209600.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
MQKLGEFKLPPFFNYPPYFTLQPVRDTREKQIQLWKDLILDFCKTQKIFIIGLEEEFPLFTNHGIERSLTHEAREAFLSALVSEGRAEWMDKGHRKCLILWHRIQDWADILIQFAKDNGLEDGVVTIEEIRSGTESQGTDLHGIDRTILNRALKLLEQKGKLVVFKGTSTDDEGVKFSL*

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