Glyma.09g207800

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Warning: get_headers(): php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1018

Warning: get_headers(https://bar.utoronto.ca/api/efp_image/efp_soybean/soybean/Absolute/Glyma.09g207800): Failed to open stream: php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1018

Warning: Trying to access array offset on false in /var/www/html/include/SeqFeatClass.php on line 1019

Warning: get_headers(): php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1020

Warning: get_headers(https://bar.utoronto.ca/api/efp_image/efp_soybean/soybean_severin/Absolute/Glyma.09g207800): Failed to open stream: php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1020

Warning: Trying to access array offset on false in /var/www/html/include/SeqFeatClass.php on line 1021

Deprecated: preg_match(): Passing null to parameter #2 ($subject) of type string is deprecated in /var/www/html/include/SeqFeatClass.php on line 1025

Deprecated: preg_match(): Passing null to parameter #2 ($subject) of type string is deprecated in /var/www/html/include/SeqFeatClass.php on line 1031

Report for Sequence Feature Glyma.09g207800

Feature Type:	gene_model
Chromosome:	Gm09
Start:	43209945
stop:	43212158
Source:	JGI
Version:	Wm82.a2.v1
High confidence:	yes

A previous version of this gene model can be found here:

Annotations for Glyma.09g207800

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G32210.1	AT	Defender against death (DAD family) protein	JGI	N/A	IEA
GO:0006486	GO-bp	protein glycosylation	EnsemblGenomes	N/A	IEA
GO:0006487	GO-bp	protein N-linked glycosylation	EnsemblGenomes	N/A	IEA
GO:0005783	GO-cc	endoplasmic reticulum	EnsemblGenomes	N/A	IEA
GO:0005789	GO-cc	endoplasmic reticulum membrane	EnsemblGenomes	N/A	IEA
GO:0008250	GO-cc	oligosaccharyltransferase complex	EnsemblGenomes	N/A	IEA
GO:0008250	GO-cc	oligosaccharyltransferase complex	JGI	N/A	IEA
GO:0016020	GO-cc	membrane	EnsemblGenomes	N/A	IEA
GO:0016021	GO-cc	integral component of membrane	EnsemblGenomes	N/A	IEA
GO:0016021	GO-cc	integral component of membrane	JGI	N/A	IEA
GO:0004576	GO-mf	oligosaccharyl transferase activity	EnsemblGenomes	N/A	IEA
GO:0004579	GO-mf	dolichyl-diphosphooligosaccharide-protein glycotransferase activity	EnsemblGenomes	N/A	IEA
GO:0004579	GO-mf	dolichyl-diphosphooligosaccharide-protein glycotransferase activity	JGI	N/A	IEA
GO:0016740	GO-mf	transferase activity	EnsemblGenomes	N/A	IEA
KOG1746	KOG	Defender against cell death protein/oligosaccharyltransferase, epsilon subunit	JGI	N/A	IEA
PTHR10705	Panther	DOLICHYL-DIPHOSPHOOLIGOSACCHARIDE--PROTEIN GLYCOSYLTRANSFERASE SUBUNIT DAD1	JGI	N/A	IEA
PF02109	PFAM	DAD family	JGI	N/A	IEA
GN7V-67818	SoyCyc9-rxn	Dolichyl-diphosphooligosaccharide--protein glycotransferase	Plant Metabolic Network		ISS

Expression Patterns of Glyma.09g207800

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.09g207800 not represented in the dataset	Glyma.09g207800 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.

Gene information in GlycineMine developed by LIS.

Related Plant Genes

Gene families from PhyloGenes.

Paralogs of Glyma.09g207800

Paralog	Evidence	Comments
Glyma.01g014300	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.09g207800 Gene Call Version Wm82.a2.v1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma09g34100	Wm82.a1.v1.1	IGC	As supplied by JGI

Transcripts of Glyma.09g207800

Limit To All Plant Sequences

>Glyma.09g207800.2 sequence-type=transcript locus=Glyma.09g207800 ID=Glyma.09g207800.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
GCTAAAAAATGATTCGGCCTAAAGCCCAAGAGAGATTGAAATGTACACCTGACCCTGAGAAAGTGGCGAAGAGAATGGGTGGGTCTAGCAGTAGCAGTAGCAGTAGCAGCAAGGACGCCCAAGACCTTTTCCGCGCTCTTTGGTCTGCTTATGCTTCAACCCCAACAAATCTCAAGATCATTGACCTCTACGTAATCTATGCCGTCTTCACCGCTCTCATCCAGGTTGTTTACATGGCTTTGGTGGGATCATTTCCATTTAACTCCTTCCTATCAGGAGTACTTTCTTGTGTAGGAACTGCTGTTCTTGCTGTCTGTCTCAGGATCCAAGTGAATAAAGATAACAAGGAATTCAAGGATCTTGCACCTGAGCGTGCTTTTGCGGATTTTGTTCTCTGTAATTTGGTGCTTCATTTGGTGATCATGAACTTCCTTGGTTAAATTGGTTCGTGTGGCTGTTGTTGTTTTCGATTGAACCCTTGAATAATAAAAATTAGTAGTATACCTAGACTTTTTGTAATAGTATTTATAGACAGTAACTGGCATCCAACTAATTGCTTTAGTTTTATGTTGATTCCCCCTCCCCCCGCCACTTTTGGTTCTCTGTTTTGAAAGAAGAGATTTTGCCATCTTTTGAAGTTTAAACAACTTTTGAATGGTGAAGAATTACAGAAGGTATTATTTTTCACATGGATATCTAAATCTGAGTACTACTCCAAAATACTCAGAAAGTGGCAAGTTATAGTTTTCTTTTGAAAAGAAGCAATTAATGGTTGCAGAACACTGCCTGTAGTATATTGCAGCTGATACCATGGTGATGCCTCCAAAAGAGCAAAGGAAAAGCTGTTTGTATGCTGCAGCATATGGCATATGATATATATACCTGATGAATCCATCTATGACATTGCTTTTATTGACCAAAAAGATTCGAGAACTCAATTTGCTTTTATTCAACAAAATGCATGTAAATATTTCTATCCTTCATCAATTCATCTTCCCCCATCCCACCCC

>Glyma.09g207800.3 sequence-type=transcript locus=Glyma.09g207800 ID=Glyma.09g207800.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
AAAATTTGCAGTCATAAAACACTCTATTTTGACCTTTTTTTAGAGGAGGATTGCAATAAGCAAGCTTGTCATAGACGTTCTAGGCTTCTAGCTTAACTATATAGTCATAGAGTGTGGATCCAGGAAGTTCCTCCAGAAATTTGTAATCTTGGTGCTTTATTTGATATTCGTCTAGTTTCTAGTTTAACGATTTCCTCCTTCAACATTAGAAGAAAAACGTACTGGTGAAATCATTTATTTTTTTTGTGAGGGCTCAAGGTTGTTTAGTGGGTTTATGTTAAAGTTACATTTGTTGAAACTCGTGTTCTTATTTTTTTTTGTCTGTGAATAGGTTGTTTACATGGCTTTGGTGGGATCATTTCCATTTAACTCCTTCCTATCAGGAGTACTTTCTTGTGTAGGAACTGCTGTTCTTGCTGTCTGTCTCAGGATCCAAGTGAATAAAGATAACAAGGAATTCAAGGATCTTGCACCTGAGCGTGCTTTTGCGGATTTTGTTCTCTGTAATTTGGTGCTTCATTTGGTGATCATGAACTTCCTTGGTTAAATTGGTTCGTGTGGCTGTTGTTGTTTTCGATTGAACCCTTGAATAATAAAAATTAGTAGTATACCTAGACTTTTTGTAATAGTATTTATAGACAGTAACTGGCATCCAACTAATTGCTTTAGTTTTATGTTGATTCCCCCTCCCCCCGCCACTTTTGGTTCTCTGTTTTGAAAGAAGAGATTTTGCCATCTTTTGAAGTTTAAACAACTTTTGAATGGTGAAGAATTACAGAAGGTATTATTTTTCACATGGATATCTAAATCTGAG

Coding sequences of Glyma.09g207800

Limit To All Plant Sequences

>Glyma.09g207800.1 sequence-type=CDS polypeptide=Glyma.09g207800.1.p locus=Glyma.09g207800 ID=Glyma.09g207800.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGATTCGGCCTAAAGCCCAAGAGAGATTGAAATGTACACCTGACCCTGAGAAAGTGGCGAAGAGAATGGGTGGGTCTAGCAGTAGCAGTAGCAGTAGCAGCAAGGACGCCCAAGACCTTTTCCGCGCTCTTTGGTCTGCTTATGCTTCAACCCCAACAAATCTCAAGATCATTGACCTCTACGTAATCTATGCCGTCTTCACCGCTCTCATCCAGGTTGTTTACATGGCTTTGGTGGGATCATTTCCATTTAACTCCTTCCTATCAGGAGTACTTTCTTGTGTAGGAACTGCTGTTCTTGCTGCGCAGCATGGGACTTATAAACCTGCTACGTACATAGGCATAAATCTTGTTCTTGTCTTTCTGATCATTGTTATCCTCCTTCATTTTGGACCAGTCTGTCTCAGGATCCAAGTGAATAAAGATAACAAGGAATTCAAGGATCTTGCACCTGAGCGTGCTTTTGCGGATTTTGTTCTCTGTAATTTGGTGCTTCATTTGGTGATCATGAACTTCCTTGGTTAA

>Glyma.09g207800.2 sequence-type=CDS polypeptide=Glyma.09g207800.2.p locus=Glyma.09g207800 ID=Glyma.09g207800.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGATTCGGCCTAAAGCCCAAGAGAGATTGAAATGTACACCTGACCCTGAGAAAGTGGCGAAGAGAATGGGTGGGTCTAGCAGTAGCAGTAGCAGTAGCAGCAAGGACGCCCAAGACCTTTTCCGCGCTCTTTGGTCTGCTTATGCTTCAACCCCAACAAATCTCAAGATCATTGACCTCTACGTAATCTATGCCGTCTTCACCGCTCTCATCCAGGTTGTTTACATGGCTTTGGTGGGATCATTTCCATTTAACTCCTTCCTATCAGGAGTACTTTCTTGTGTAGGAACTGCTGTTCTTGCTGTCTGTCTCAGGATCCAAGTGAATAAAGATAACAAGGAATTCAAGGATCTTGCACCTGAGCGTGCTTTTGCGGATTTTGTTCTCTGTAATTTGGTGCTTCATTTGGTGATCATGAACTTCCTTGGTTAA

>Glyma.09g207800.3 sequence-type=CDS polypeptide=Glyma.09g207800.3.p locus=Glyma.09g207800 ID=Glyma.09g207800.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCTTTGGTGGGATCATTTCCATTTAACTCCTTCCTATCAGGAGTACTTTCTTGTGTAGGAACTGCTGTTCTTGCTGTCTGTCTCAGGATCCAAGTGAATAAAGATAACAAGGAATTCAAGGATCTTGCACCTGAGCGTGCTTTTGCGGATTTTGTTCTCTGTAATTTGGTGCTTCATTTGGTGATCATGAACTTCCTTGGTTAA

Predicted protein sequences of Glyma.09g207800

Limit To All Plant Sequences

>Glyma.09g207800.1.p sequence-type=predicted peptide transcript=Glyma.09g207800.1 locus=Glyma.09g207800 ID=Glyma.09g207800.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MIRPKAQERLKCTPDPEKVAKRMGGSSSSSSSSSKDAQDLFRALWSAYASTPTNLKIIDLYVIYAVFTALIQVVYMALVGSFPFNSFLSGVLSCVGTAVLAAQHGTYKPATYIGINLVLVFLIIVILLHFGPVCLRIQVNKDNKEFKDLAPERAFADFVLCNLVLHLVIMNFLG*

>Glyma.09g207800.2.p sequence-type=predicted peptide transcript=Glyma.09g207800.2 locus=Glyma.09g207800 ID=Glyma.09g207800.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MIRPKAQERLKCTPDPEKVAKRMGGSSSSSSSSSKDAQDLFRALWSAYASTPTNLKIIDLYVIYAVFTALIQVVYMALVGSFPFNSFLSGVLSCVGTAVLAVCLRIQVNKDNKEFKDLAPERAFADFVLCNLVLHLVIMNFLG*

>Glyma.09g207800.3.p sequence-type=predicted peptide transcript=Glyma.09g207800.3 locus=Glyma.09g207800 ID=Glyma.09g207800.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
MALVGSFPFNSFLSGVLSCVGTAVLAVCLRIQVNKDNKEFKDLAPERAFADFVLCNLVLHLVIMNFLG*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain