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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A previous version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G03550.1 | AT | RING/U-box superfamily protein | JGI | N/A | IEA |
| GO:0016567 | GO-bp | protein ubiquitination | EnsemblGenomes | N/A | IEA |
| GO:0043161 | GO-bp | proteasome-mediated ubiquitin-dependent protein catabolic process | EnsemblGenomes | N/A | IEA |
| GO:0005680 | GO-cc | anaphase-promoting complex | JGI | N/A | IEA |
| GO:0016020 | GO-cc | membrane | EnsemblGenomes | N/A | IEA |
| GO:0016021 | GO-cc | integral component of membrane | EnsemblGenomes | N/A | IEA |
| GO:0004842 | GO-mf | ubiquitin-protein ligase activity | JGI | N/A | IEA |
| GO:0005515 | GO-mf | protein binding | JGI | N/A | IEA |
| GO:0008270 | GO-mf | zinc ion binding | JGI | N/A | IEA |
| GO:0046872 | GO-mf | metal ion binding | JGI | N/A | IEA |
| GO:0061630 | GO-mf | ubiquitin protein ligase activity | EnsemblGenomes | N/A | IEA |
| KOG2930 | KOG | SCF ubiquitin ligase, Rbx1 component | JGI | N/A | IEA |
| PTHR14155 | Panther | RING FINGER DOMAIN-CONTAINING | JGI | N/A | IEA |
| PTHR14155:SF30 | Panther | JGI | N/A | IEA | |
| PF00097 | PFAM | Zinc finger, C3HC4 type (RING finger) | JGI | N/A | IEA |
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Glyma.09g205600 not represented in the dataset |
Glyma.09g205600 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.
Gene information in GlycineMine developed by LIS.
Gene families from PhyloGenes.
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma.01g017300 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma09g33800 | Wm82.a1.v1.1 | IGC | As supplied by JGI |
>Glyma.09g205600.1 sequence-type=CDS polypeptide=Glyma.09g205600.1.p locus=Glyma.09g205600 ID=Glyma.09g205600.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGAACAACAAAGACTGTTCACAAGGATTTTGTAGCTTGTATTGTCCACAGTGGTGCTATGTAATCTACCCTCCTCCTCCTCCTCCTCCCTTTGAATTTCCCAGTGATGATTCAAGTCCAAATTTCTCACCTCTAGTTATTGCAGTCATTGGAGTCTTAGCCAGTGCTTTTCTTCTAGTGAGCTACTACACCATAATATCCAAGTACTGTGGCAACAGAGAATCTTCACAAAGCGAAGAGCACGAAGAAAACGTTGAATTGGAAGAAGATGATCACAACCCTTCACACCACGAGCCTTGGCATGCTTCAACAATTGGCTTGGATGAGGCTTTGATAAAGTCCATAACAGCTTGCAAGTACAAGAAAGGTGATGGATTGGTTGAGGTAACAGATTGCTCCGTTTGTCTCAGCGAGTTTCGAGATGATGAAAGTGTTAGGCTCTTGCCAAAATGCAGCCACGCTTTTCATCTTCCTTGCATTGACACATGGCTGAAATCTCACTCTAGTTGCCCTCTATGCCGTGCTAGCATATTCACCTTCAATGCTGCAGCAGCACTTCATGTTGCTGCGACGGTCACGGAACCAACTTCAAGAAACGATACCACTTCAGGAAACAGACATGCAGATGATGAAAACGTTGTTGCTGTTGCAGGGGACAGTGAATCGGATGCTGTTGAAGGAGAATCAGTCACACTCTCACATGGTGGAGCGGTTTCAAAGAGTGCATTGCGTGTTTTGAGTGATCTAGGAAACTTGAGAGGGAGGCATAGTGTAATTGAGATTAGAGATGAAGGGTATGATTCCATTAGAAGGACGGTTTCAATGGACCATTCGTTTCAAAGGGGTAGTGGTCTTTCAATTGCTGATGTTCTGCATGTGAATCAAGAGCATGAAGGGTGTTCTAATGGGGCTGGTCCTTCAAAGAATTCAAGAGGTGAAAGTAGCAAGTCTAGCTACAGGAGAAGGGTTTTGCATTGTGTTTTGAGTCCAATTGCAATGAAAAGATCATTTTCTAGTGGAAGGTTCTCCCTTAGCAGAAATGGCAGAGGAAAGCAATGGGTTCTGCCTGTCTGA
>Glyma.09g205600.1.p sequence-type=predicted peptide transcript=Glyma.09g205600.1 locus=Glyma.09g205600 ID=Glyma.09g205600.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 MNNKDCSQGFCSLYCPQWCYVIYPPPPPPPFEFPSDDSSPNFSPLVIAVIGVLASAFLLVSYYTIISKYCGNRESSQSEEHEENVELEEDDHNPSHHEPWHASTIGLDEALIKSITACKYKKGDGLVEVTDCSVCLSEFRDDESVRLLPKCSHAFHLPCIDTWLKSHSSCPLCRASIFTFNAAAALHVAATVTEPTSRNDTTSGNRHADDENVVAVAGDSESDAVEGESVTLSHGGAVSKSALRVLSDLGNLRGRHSVIEIRDEGYDSIRRTVSMDHSFQRGSGLSIADVLHVNQEHEGCSNGAGPSKNSRGESSKSSYRRRVLHCVLSPIAMKRSFSSGRFSLSRNGRGKQWVLPV*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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