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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A previous version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G37870.1 | AT | phosphoenolpyruvate carboxykinase 1 | JGI | N/A | IEA |
| GO:0006094 | GO-bp | gluconeogenesis | EnsemblGenomes | N/A | IEA |
| GO:0006094 | GO-bp | gluconeogenesis | JGI | N/A | IEA |
| GO:0005829 | GO-cc | cytosol | EnsemblGenomes | N/A | IEA |
| GO:0004611 | GO-mf | phosphoenolpyruvate carboxykinase activity | EnsemblGenomes | N/A | IEA |
| GO:0004612 | GO-mf | phosphoenolpyruvate carboxykinase (ATP) activity | EnsemblGenomes | N/A | IEA |
| GO:0004612 | GO-mf | phosphoenolpyruvate carboxykinase (ATP) activity | JGI | N/A | IEA |
| GO:0005524 | GO-mf | ATP binding | EnsemblGenomes | N/A | IEA |
| GO:0005524 | GO-mf | ATP binding | JGI | N/A | IEA |
| GO:0017076 | GO-mf | purine nucleotide binding | EnsemblGenomes | N/A | IEA |
| PTHR11699 | Panther | ALDEHYDE DEHYDROGENASE-RELATED | JGI | N/A | IEA |
| PTHR11699:SF22 | Panther | JGI | N/A | IEA | |
| PF01293 | PFAM | Phosphoenolpyruvate carboxykinase | JGI | N/A | IEA |
| GLUCONEO-PWY | SoyCyc9 | gluconeogenesis I | Plant Metabolic Network | ISS | |
| PWY-561 | SoyCyc9 | superpathway of glyoxylate cycle and fatty acid degradation | Plant Metabolic Network | ISS | |
| GN7V-58263 | SoyCyc9-rxn | phosphoenolpyruvate carboxykinase (GTP) | Plant Metabolic Network | ISS |
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Glyma.09g203500 not represented in the dataset |
Glyma.09g203500 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.
Gene information in GlycineMine developed by LIS.
Gene families from PhyloGenes.
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma.01g019200 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma09g33650 | Wm82.a1.v1.1 | IGC | As supplied by JGI |
>Glyma.09g203500.1 sequence-type=CDS polypeptide=Glyma.09g203500.1.p locus=Glyma.09g203500 ID=Glyma.09g203500.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGGCGTCGAACGGGAATGGCAGCGTTGCGAACGGGAACGGGACCGCTAGGAACGGACTGGCGAAGATTCAGACGCACAAGAAGCATAACGGAATTTGTCACGACGACAGCGGTCCGACCGTAAAGGCTCAAACCATTGATGAGCTTCACTCGCTGCAGAAGAAGAAATCCGCGCCCACCACTCCCGTTACGGGGTTTCAGGCTCCGTTCGCCACCCTCACCGAAGAAGAACGTCATAAGCAACAACTCCAGTCAATCAGTGCATCCCTGGCATCACTGACTAGAGAAACTGGACCGAATCTGGTGAAGGGAGACCCAGCTCGGAAGTCAGATACCCAGAAGGTTACTCACGTGCACCACCATCATGTCAGTACTCCCACCATTGCTGTCAGCGACAGTGCTTTGAAATTTACTCATGTCCTCTACAATCTCTCCCCAGCTGAACTTTATGAACAGGCGATTAAGTATGAGAAAGGATCGTTCATCAGTTCCACCGGAGCATTGGCAACACTTTCTGGGGCCAAGACGGGTCGCTCTCCAAGGGACAAGCGCGTCGTCAAGGATGATCTTACTAAGAACGACCTTTGGTGGGGAAAGGGTTCTCCTAACATCGAGATGGACGAGCACAGTTTCATGGTGAACAGAGAAAGAGCTGTTGATTACTTGAACTCCTTGGACAAGGTCTTCGTCAATGACCAATTCTTGAATTGGGACACAGAGAACAGAATCAAAGTCCGGATTGTATCTGCCAGAGCTTACCATTCATTGTTCATGCACAACATGTGTATCCGCCCCACTCCTGAAGAGCTGGAGAATTTTGGTACTCCGGACTTCACTATATACAATGCTGGACAGTTCCCGTGTAATCGTTATACTCACTACATGACATCCTCCACTAGCATAGATCTTAATCTTGCTAGGAGGGAAATGGTCATCCTCGGCACACAATACGCCGGGGAAATGAAGAAGGGTCTTTTCAGTGTCATGCATTATCTCATGCCTAAGCGCCAAATCCTCTCCCTACACTCCGGATGCAATATGGGCAAAGATGGGGATGTGGCACTCTTCTTTGGACTCTCAGGTACTGGGAAGACCACTCTTTCCACCGATCACAATAGGTATTTAATCGGAGATGATGAACACTGTTGGGGTGACAATGGTGTCTCCAACATTGAAGGTGGTTGCTATGCCAAATGCATTGACCTCTCACGGGAGAAAGAGCCAGATATTTGGAATGCAATCAGGTTTGGCACAGTGTTGGAAAATGTGGTGTTTGATGAGCATGATCGAGAAGTTGATTACTCTGACAAGTCAGTTACAGAAAATACTCGTGCAGCTTATCCTATAGAGTACATTCCAAATGCAAAGTTACCTTGTGTTGGCCCTCACCCAAAGAATGTCATACTTTTGGCATGTGACGCATTTGGTGTACTCCCACCCGTTAGCAAGCTAAACCTGGCACAGACCATGTACCATTTCATCAGTGGATATACTGCTTTGGTGGCTGGCACAGAAGAAGGTATTAAGGAGCCTCAGGCAACTTTTTCAGCTTGTTTTGGTGCAGCATTCATTATGCTACACCCTACAAAGTATGCAGCAATGCTTGCTGAAAAGATGCAGAAGCATGGTGCTACTGGATGGCTTGTTAACACTGGTTGGTCTGCTGGAAGCTATGGTAATGGAAGCCGTATTAAACTACAATACACAAGGAAAATCATTGATGCTATTCACTCCGGAAGTCTCCTGAATGCAGAGTACAAGAAGACTGAAATTTTTGGGCTTGAGATTCCCACCGAAGTGGAGGGTGTCCCTTCAGAAATTCTGGATCCTATGAACACTTGGTCAAACAAAAAGGCCTACAAGGAGACACTATTGAAGTTGGCTGGATTGTTCAAGAACAATTTTGAAACCTTCACCAACTACAAGATTGGCAAGGGAAACAACAACCTGACAGAAGAGATTCTCGCAGCTGGTCCAATCTTTTGA
>Glyma.09g203500.1.p sequence-type=predicted peptide transcript=Glyma.09g203500.1 locus=Glyma.09g203500 ID=Glyma.09g203500.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 MASNGNGSVANGNGTARNGLAKIQTHKKHNGICHDDSGPTVKAQTIDELHSLQKKKSAPTTPVTGFQAPFATLTEEERHKQQLQSISASLASLTRETGPNLVKGDPARKSDTQKVTHVHHHHVSTPTIAVSDSALKFTHVLYNLSPAELYEQAIKYEKGSFISSTGALATLSGAKTGRSPRDKRVVKDDLTKNDLWWGKGSPNIEMDEHSFMVNRERAVDYLNSLDKVFVNDQFLNWDTENRIKVRIVSARAYHSLFMHNMCIRPTPEELENFGTPDFTIYNAGQFPCNRYTHYMTSSTSIDLNLARREMVILGTQYAGEMKKGLFSVMHYLMPKRQILSLHSGCNMGKDGDVALFFGLSGTGKTTLSTDHNRYLIGDDEHCWGDNGVSNIEGGCYAKCIDLSREKEPDIWNAIRFGTVLENVVFDEHDREVDYSDKSVTENTRAAYPIEYIPNAKLPCVGPHPKNVILLACDAFGVLPPVSKLNLAQTMYHFISGYTALVAGTEEGIKEPQATFSACFGAAFIMLHPTKYAAMLAEKMQKHGATGWLVNTGWSAGSYGNGSRIKLQYTRKIIDAIHSGSLLNAEYKKTEIFGLEIPTEVEGVPSEILDPMNTWSNKKAYKETLLKLAGLFKNNFETFTNYKIGKGNNNLTEEILAAGPIF*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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