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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A previous version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G65620.1 | AT | Zincin-like metalloproteases family protein | JGI | N/A | IEA |
| GO:0006465 | GO-bp | signal peptide processing | EnsemblGenomes | N/A | IEA |
| GO:0006508 | GO-bp | proteolysis | EnsemblGenomes | N/A | IEA |
| GO:0006508 | GO-bp | proteolysis | JGI | N/A | IEA |
| GO:0005829 | GO-cc | cytosol | EnsemblGenomes | N/A | IEA |
| GO:0009507 | GO-cc | chloroplast | EnsemblGenomes | N/A | IEA |
| GO:0004222 | GO-mf | metalloendopeptidase activity | EnsemblGenomes | N/A | IEA |
| GO:0004222 | GO-mf | metalloendopeptidase activity | JGI | N/A | IEA |
| GO:0008233 | GO-mf | peptidase activity | EnsemblGenomes | N/A | IEA |
| GO:0008237 | GO-mf | metallopeptidase activity | EnsemblGenomes | N/A | IEA |
| GO:0016787 | GO-mf | hydrolase activity | EnsemblGenomes | N/A | IEA |
| GO:0046872 | GO-mf | metal ion binding | EnsemblGenomes | N/A | IEA |
| KOG2089 | KOG | Metalloendopeptidase family - saccharolysin & thimet oligopeptidase | JGI | N/A | IEA |
| PTHR11804 | Panther | PROTEASE M3 THIMET OLIGOPEPTIDASE-RELATED | JGI | N/A | IEA |
| PTHR11804:SF7 | Panther | JGI | N/A | IEA | |
| PF01432 | PFAM | Peptidase family M3 | JGI | N/A | IEA |
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Glyma.09g202100 not represented in the dataset |
Glyma.09g202100 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.
Gene information in GlycineMine developed by LIS.
Gene families from PhyloGenes.
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma.01g020300 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma09g33490 | Wm82.a1.v1.1 | IGC | As supplied by JGI |
>Glyma.09g202100.1 sequence-type=CDS polypeptide=Glyma.09g202100.1.p locus=Glyma.09g202100 ID=Glyma.09g202100.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGAGACGGTCATCTCTAGTGAGTGCCCTTCTTATAGCAAACATTCTCATGGCAACACGCCTTACCCTCACTCTTCCTTTCTCTCGCTCCATCTCTCCACTCTTATCTCGTTCCCTTTCACAACTCAAACAATTCCCAAAATCCCACCCTTGTCCCCTCTGGTCCTCCTCCTTCTCCTTCTGCCTCCACACACTCCGCAAGTCCACTTCCCCTATTCGCGCCTCTTCTTCTTTTTCTCCCTCCATGGCTGCTTCTTCTCCGCTAAACGACGCCGTCGAAGGCAATCCTCTTCTGCAGAACTTCGACTTCCCACCCTTCGATGTCCTCGAGCCCAAACACGTGCGACCCGGCATTCGCGCCCTCCTCGGCAAGCTGGAAAGTGAATTGGAGGAGCTCGAACGGAACGTGGAACCGTCGTGGCCAAAGTTGGTGGAACCGTTGGAGAAGATCGTTGACCGGTTATCTGTAGTTTGGGGCATGATCAATCATCTAAAGTCTGTTAAGGATAGTTCGGAGCTACGTTCTGCTATTGAAGATGTACAGGCAGAAAAAGTTAAGTTTCAGCTTAGACTGGGTCAAAGCAAACCTATTTATAATGCATTCAAAGCCATTCAGGAGTCTCCTGATTGGCAGACACTCAGTGATGCTCGAAAACGTATTGTTGAAAGCCAAATAAAGGAGGCGGTTCTTAATGGAGTTTCTCTTGAAGATGATAAAAGAGAAAGTTTTAACAAAATTGAACAGGAGCTGGAAAAGTTATCACAAAAGTTTGGGGAGAATGTTCTGGATGCAACAAAGAAGTTTGAAAAGCTAATCACTGATAAGAAGGAAATTGAAGGATTACCTGCCACTGCTCTTGGGTTGGCTGCACAGAGTGCAGTATCCAAGGGGCATGAAAATGCCACCGCTGAGAATGGGCCATGGATAATTACATTAGATGCTCCTAGTTTTATTGCTGTTATGCAACATGCTCGCAACCGTTCTTTGCGTGAGGAAATCTACCGTGCATATGTAACACGTGCATCTAGTGGAGATTTGGATAATACAGGAATAATTGATCAAATTTTAAAGCTAAGGTTGGAAAAGGCCAAGCTTCTAAACTACAATAACTATGCCGAGGTTAGCATGGCAACCAAAATGGCAACTGTTGATAAAGCAGAAGAACTTCTTGAAAAGCTTCGCAGGGCTTCCTGGGATCCTGCAGTGCAAGATATTGAAGACCTTAAGGAATTCTCCAAAAGTCAGGGAGCATTGGAAGCTGGTGATTTGACTCATTGGGACATTACCTTTTGGAGTGAGAGGCTACGTGAGTCAAAATATGATATTAATGAGGAAGAACTGCGTCCCTTTTTCTCTCTGCCAAAGGTTATGGATGGACTCTTTAACCTTGCAAAATCACTTTTTGGCATTGAAATTGAGCCAGCTGATGGTCTAGCTCCGGTCTGGAATAATGATGTTAGGTTCTTCTGTGTTAAGGATTCTTCTGGTAGTCCAATTGCGTATTTTTATTTTGATCCTTATAGTCGTCCTGCTGAAAAAAGGCAAGGTGCATGGATGGATGAAGTCTTTGCTCGTAGTCGTGTGTTATCGCGCGATGGTACCTCAGCAAGATTGCCTGTTGCTCACATGGTGTGCAATCAAACTCCTCCAGTAGGAAACAAGCCAAGTCTAATGACATTCCGTGAGGTTGAGACTGTTTTCCATGAATTTGGTCATGCACTTCAACATATGCTTACTAAGCAAGATGAGGGTCTGGTTGCTGGTATTAGAGGGATAGAGTGGGATGCTGTTGAGTTACCTTCTCAGTTCATGGAAAACTGGTGTTACCATAGAGAAACTTTAATGGGTATTGCAAAGCATTTTGAAACTGGGGAGAGTCTTCCTGAAGAAGTATATTTGAAGCTTGTTGCTGCTAGGACATTTCGAGCTGGCTCTCTAAGTCTTCGACAGTTAAAATTCGCAAGTGTAGATCTGGAACTTCATACAAAATATGTTCCAGGGGGACCTGAGTCAATCTATGATGTTGACCGCAGAGTTTCTGAGAAAACCCAAGTGATTCCTCCATTACCAGAGGATAGGTTCCTTTGCAGCTTTAGCCATATATTTGCAGGTGGATATGCAGCTGGATACTATAGTTACAAGTGGGCTGAGGTGCTGTCTGCAGATGCTTTCTCTGCATTTGAGGATGCTGGATTGGATAATGACAAGGCTGTTAAAGAAACTGGGCGAAAGTTCCGGGAGACCATTCTTGCTCTTGGAGGTGGCAAGCCACCACTAGATGTTTTTGTGCAATTCCGTGGGAGAGAACCAACACCAGATGCATTGCTTAGGCACAATGGCCTATTACAAGTTGCAGCTTCGTGA
>Glyma.09g202100.1.p sequence-type=predicted peptide transcript=Glyma.09g202100.1 locus=Glyma.09g202100 ID=Glyma.09g202100.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 MRRSSLVSALLIANILMATRLTLTLPFSRSISPLLSRSLSQLKQFPKSHPCPLWSSSFSFCLHTLRKSTSPIRASSSFSPSMAASSPLNDAVEGNPLLQNFDFPPFDVLEPKHVRPGIRALLGKLESELEELERNVEPSWPKLVEPLEKIVDRLSVVWGMINHLKSVKDSSELRSAIEDVQAEKVKFQLRLGQSKPIYNAFKAIQESPDWQTLSDARKRIVESQIKEAVLNGVSLEDDKRESFNKIEQELEKLSQKFGENVLDATKKFEKLITDKKEIEGLPATALGLAAQSAVSKGHENATAENGPWIITLDAPSFIAVMQHARNRSLREEIYRAYVTRASSGDLDNTGIIDQILKLRLEKAKLLNYNNYAEVSMATKMATVDKAEELLEKLRRASWDPAVQDIEDLKEFSKSQGALEAGDLTHWDITFWSERLRESKYDINEEELRPFFSLPKVMDGLFNLAKSLFGIEIEPADGLAPVWNNDVRFFCVKDSSGSPIAYFYFDPYSRPAEKRQGAWMDEVFARSRVLSRDGTSARLPVAHMVCNQTPPVGNKPSLMTFREVETVFHEFGHALQHMLTKQDEGLVAGIRGIEWDAVELPSQFMENWCYHRETLMGIAKHFETGESLPEEVYLKLVAARTFRAGSLSLRQLKFASVDLELHTKYVPGGPESIYDVDRRVSEKTQVIPPLPEDRFLCSFSHIFAGGYAAGYYSYKWAEVLSADAFSAFEDAGLDNDKAVKETGRKFRETILALGGGKPPLDVFVQFRGREPTPDALLRHNGLLQVAAS*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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