Glyma.09g200300

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Report for Sequence Feature Glyma.09g200300

Feature Type:	gene_model
Chromosome:	Gm09
Start:	42466263
stop:	42471449
Source:	JGI
Version:	Wm82.a2.v1
High confidence:	yes

A previous version of this gene model can be found here:

Annotations for Glyma.09g200300

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G22600.1	AT	RNA-binding KH domain-containing protein	JGI	N/A	IEA
AT5G64390.1	AT	RNA-binding KH domain-containing protein	JGI	N/A	IEA
GO:0003676	GO-mf	nucleic acid binding	EnsemblGenomes	N/A	IEA
GO:0003723	GO-mf	RNA binding	EnsemblGenomes	N/A	IEA
GO:0003723	GO-mf	RNA binding	JGI	N/A	IEA
KOG2190	KOG	PolyC-binding proteins alphaCP-1 and related KH domain proteins	JGI	N/A	IEA
PTHR10288	Panther	KH DOMAIN CONTAINING RNA BINDING PROTEIN	JGI	N/A	IEA
PTHR10288:SF53	Panther		JGI	N/A	IEA
PF00013	PFAM	KH domain	JGI	N/A	IEA

Expression Patterns of Glyma.09g200300

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.09g200300 not represented in the dataset	Glyma.09g200300 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.

Gene information in GlycineMine developed by LIS.

Related Plant Genes

Gene families from PhyloGenes.

Paralogs of Glyma.09g200300

Paralog	Evidence	Comments
Glyma.01g021400	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.09g200300 Gene Call Version Wm82.a2.v1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma09g33290	Wm82.a1.v1.1	IGC	As supplied by JGI

Transcripts of Glyma.09g200300

Limit To All Plant Sequences

>Glyma.09g200300.2 sequence-type=transcript locus=Glyma.09g200300 ID=Glyma.09g200300.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
AAGACACTTCCGCGTTGCTTCCATTCCATATGTTCCATTTCATCACTCCACCCTCTTTTTCTCTCGGGAATCAGTAACTAAAAGACAACCAAACCAAACCAAACCATGAAGAAACCCTTAACCTTAACCCTAACCTTGTACCCCTCACTCTCTCCCTTTGTCGTCCCTTCCCTCCGATCCAAGTGAGCAACTCCACTCAACTCCACTCGCGGCGCGTGACATGAAAAAAAGATCCCACGCTGGAACCCACAGGCCACGCAATGCAAGACCCCGCCACCTCCGACACCACCGATCACCAAacgacgccgtccccgtcgccctcgccgaagcgcaagaccacgacgacgacgacgacgacTAACCGTTCTAACAACAAGCGCCCCGTGTTCAAGGTCCTCCCGGGGCAGATCGCGTTCCGCCTCGTGTGCCACGCGTCCATCGTCGGCGGCCTCATCGGCAGCTCCGGCTCCATCGTGTCGCAGCTCCGCCGCGAGACCGCCTGCAAAATCCACTGCGAGGACTCCCTCTCCTCCGCCGAGGACCGCGTCATCCTCGTCATCGGCTCCGTCTCGCCGCGAAAGGGCCTTCAACTCGGCGACGGCGGCGAGGTCGAGGTCTCCAGCGCGCAGGAAGCCATCGTTAGGGTTTTCGAGAGGGTTTGGGGCCTCGAGGCCGAGAAAGGCGTCAATTCTAACAGAGCCGTTAACAGCGAGGTTTTCTCGAAGTTGCTAGCTCACACTTCGCAGATTGGTGCTGTTGTTGGCAAAGGAGGGAAGAACATAACCGCCATTAGGAACAGTACCGGTGCCAAAATTAGGGTTTGTCCTCCTCCGCAATGCGCCACTAAAGACGAAGAGTTAGTTCTAATAACTGGTGGAATTTTGGCTGTAAAGAAAGCACTGATTTCTGTATCTCATTGTCTTCAAGATTGTCCGCCATTATGCAAAGTTCCCGTTTCTTCTAGTATACCCACTGTTAGCTCTTTTGATAGGTCGTCCTCTGATCCAAATGCTGAACTTTTTCCTCGCCTTAATTCATTGTTAACCTCCATGGAAGGTTTATCTATATATGAACGGACCACAAACTCCAATGAATCCTCTAACCGTGACTCAAAAGGTGGAGAACACGAAGTTGTGTTCAGACTACTTTGCTCTAATAATGTAGCTGGGAGCGTGATTGGCAAAAGAGGGGCTATAGTCAGAGCTCTGGAAAGTAAAACAGGTGCTTCTATTATCTTTGCAGCTCCTTTAAGCGAGCATGCCGAGCGCATTGTCACCATTTCTGCTATCGAGAGCCTTGAATCTTGTAATTCTCCTGCACAAGATGCTGTTATTCTTGTCTTTGCTAGAATTATTGAAGATCACATTGGAAAGGGTTTTCTCCAAGTCTCTAGTATGGAATCACCTGTAACTGCAAGGCTTTTAGTTGCAACAAGCACGGTAAATAGCTGGAGTGGCAATGAAGGTCAGGTGATTTTAGAATTGAGAGAAGTAACTGGGGCTGACATACAAATATTGCATGGAGAGTCAGTTCCTAACGGTGCTTCAGATGACGATGTGGTGGTGCAGGTACACTTATAAATTTATATAATTCAAGTTAACTTTTTTTAAAGGATCTTAAGAGTTTAAATTTATTTACCCGATGGCATGAGCTTCTGTAATTTTTTTAGATCCTGATTTTGTTGCCATATG

Coding sequences of Glyma.09g200300

Limit To All Plant Sequences

>Glyma.09g200300.1 sequence-type=CDS polypeptide=Glyma.09g200300.1.p locus=Glyma.09g200300 ID=Glyma.09g200300.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGCAAGACCCCGCCACCTCCGACACCACCGATCACCAAACGACGCCGTCCCCGTCGCCCTCGCCGAAGCGCAAGACCACGACGACGACGACGACGACTAACCGTTCTAACAACAAGCGCCCCGTGTTCAAGGTCCTCCCGGGGCAGATCGCGTTCCGCCTCGTGTGCCACGCGTCCATCGTCGGCGGCCTCATCGGCAGCTCCGGCTCCATCGTGTCGCAGCTCCGCCGCGAGACCGCCTGCAAAATCCACTGCGAGGACTCCCTCTCCTCCGCCGAGGACCGCGTCATCCTCGTCATCGGCTCCGTCTCGCCGCGAAAGGGCCTTCAACTCGGCGACGGCGGCGAGGTCGAGGTCTCCAGCGCGCAGGAAGCCATCGTTAGGGTTTTCGAGAGGGTTTGGGGCCTCGAGGCCGAGAAAGGCGTCAATTCTAACAGAGCCGTTAACAGCGAGGTTTTCTCGAAGTTGCTAGCTCACACTTCGCAGATTGGTGCTGTTGTTGGCAAAGGAGGGAAGAACATAACCGCCATTAGGAACAGTACCGGTGCCAAAATTAGGGTTTGTCCTCCTCCGCAATGCGCCACTAAAGACGAAGAGTTAGTTCTAATAACTGGTGGAATTTTGGCTGTAAAGAAAGCACTGATTTCTGTATCTCATTGTCTTCAAGATTGTCCGCCATTATGCAAAGTTCCCGTTTCTTCTAGTATACCCACTGTTAGCTCTTTTGATAGGTCGTCCTCTGATCCAAATGCTGAACTTTTTCCTCGCCTTAATTCATTGTTAACCTCCATGGAAGGTTTATCTATATATGAACGGACCACAAACTCCAATGAATCCTCTAACCGTGACTCAAAAGGTGGAGAACACGAAGTTGTGTTCAGACTACTTTGCTCTAATAATGTAGCTGGGAGCGTGATTGGCAAAAGAGGGGCTATAGTCAGAGCTCTGGAAAGTAAAACAGGTGCTTCTATTATCTTTGCAGCTCCTTTAAGCGAGCATGCCGAGCGCATTGTCACCATTTCTGCTATCGAGAGCCTTGAATCTTGTAATTCTCCTGCACAAGATGCTGTTATTCTTGTCTTTGCTAGAATTATTGAAGATCACATTGGAAAGGGTTTTCTCCAAGTCTCTAGTATGGAATCACCTGTAACTGCAAGGCTTTTAGTTGCAACAAGCACGGTAAATAGCTGGAGTGGCAATGAAGGTCAGGTGATTTTAGAATTGAGAGAAGTAACTGGGGCTGACATACAAATATTGCATGGAGAGTCAGTTCCTAACGGTGCTTCAGATGACGATGTGGTGGTGCAGATCACTGGAGAATACAGATGTGTACAAAATGCCCTATATAAAATTACTTCTAGAATCAGGGATAATCTTTCACCCAATGAGGCGGTTACTGAAGCAAGACCGAAATCCAATTGGAAAGTGAATAAGGATCCTGTAAAGGGTAAACCTTTTTCCCGTGGAAAATCTGCGTTTCCTTCTGGGAGGTTTCTGCCACGGAATGCAGGGGTCCATGCTGAAACAATATTACAAAATGGAGAATTACATACGGATTTAAGTGAGAATTTGGAACGTGGGAGAGGAAACATGTTTGCTACGGTGACAAATACTACTGTGGAGATAATAGTTTCTGAACACGTCTTTGGTTCTGTTTATGGTGAAGATGGTGGCAATTTGGATCGAATCAGACAGATTTCAGGTGCAACTGTTACGGTTTATGATCCTTCCGTTGGTACAAGTGGAGGGAAAGTTGTCATATCTGGGACACCAGATCAAACCTTGGCAGCGCAGAGCTTGCTTCAAGCCTTTATTCAAACGGGAGAAGTAAGCTGA

>Glyma.09g200300.2 sequence-type=CDS polypeptide=Glyma.09g200300.2.p locus=Glyma.09g200300 ID=Glyma.09g200300.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGCAAGACCCCGCCACCTCCGACACCACCGATCACCAAACGACGCCGTCCCCGTCGCCCTCGCCGAAGCGCAAGACCACGACGACGACGACGACGACTAACCGTTCTAACAACAAGCGCCCCGTGTTCAAGGTCCTCCCGGGGCAGATCGCGTTCCGCCTCGTGTGCCACGCGTCCATCGTCGGCGGCCTCATCGGCAGCTCCGGCTCCATCGTGTCGCAGCTCCGCCGCGAGACCGCCTGCAAAATCCACTGCGAGGACTCCCTCTCCTCCGCCGAGGACCGCGTCATCCTCGTCATCGGCTCCGTCTCGCCGCGAAAGGGCCTTCAACTCGGCGACGGCGGCGAGGTCGAGGTCTCCAGCGCGCAGGAAGCCATCGTTAGGGTTTTCGAGAGGGTTTGGGGCCTCGAGGCCGAGAAAGGCGTCAATTCTAACAGAGCCGTTAACAGCGAGGTTTTCTCGAAGTTGCTAGCTCACACTTCGCAGATTGGTGCTGTTGTTGGCAAAGGAGGGAAGAACATAACCGCCATTAGGAACAGTACCGGTGCCAAAATTAGGGTTTGTCCTCCTCCGCAATGCGCCACTAAAGACGAAGAGTTAGTTCTAATAACTGGTGGAATTTTGGCTGTAAAGAAAGCACTGATTTCTGTATCTCATTGTCTTCAAGATTGTCCGCCATTATGCAAAGTTCCCGTTTCTTCTAGTATACCCACTGTTAGCTCTTTTGATAGGTCGTCCTCTGATCCAAATGCTGAACTTTTTCCTCGCCTTAATTCATTGTTAACCTCCATGGAAGGTTTATCTATATATGAACGGACCACAAACTCCAATGAATCCTCTAACCGTGACTCAAAAGGTGGAGAACACGAAGTTGTGTTCAGACTACTTTGCTCTAATAATGTAGCTGGGAGCGTGATTGGCAAAAGAGGGGCTATAGTCAGAGCTCTGGAAAGTAAAACAGGTGCTTCTATTATCTTTGCAGCTCCTTTAAGCGAGCATGCCGAGCGCATTGTCACCATTTCTGCTATCGAGAGCCTTGAATCTTGTAATTCTCCTGCACAAGATGCTGTTATTCTTGTCTTTGCTAGAATTATTGAAGATCACATTGGAAAGGGTTTTCTCCAAGTCTCTAGTATGGAATCACCTGTAACTGCAAGGCTTTTAGTTGCAACAAGCACGGTAAATAGCTGGAGTGGCAATGAAGGTCAGGTGATTTTAGAATTGAGAGAAGTAACTGGGGCTGACATACAAATATTGCATGGAGAGTCAGTTCCTAACGGTGCTTCAGATGACGATGTGGTGGTGCAGGTACACTTATAA

Predicted protein sequences of Glyma.09g200300

Limit To All Plant Sequences

>Glyma.09g200300.1.p sequence-type=predicted peptide transcript=Glyma.09g200300.1 locus=Glyma.09g200300 ID=Glyma.09g200300.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MQDPATSDTTDHQTTPSPSPSPKRKTTTTTTTTNRSNNKRPVFKVLPGQIAFRLVCHASIVGGLIGSSGSIVSQLRRETACKIHCEDSLSSAEDRVILVIGSVSPRKGLQLGDGGEVEVSSAQEAIVRVFERVWGLEAEKGVNSNRAVNSEVFSKLLAHTSQIGAVVGKGGKNITAIRNSTGAKIRVCPPPQCATKDEELVLITGGILAVKKALISVSHCLQDCPPLCKVPVSSSIPTVSSFDRSSSDPNAELFPRLNSLLTSMEGLSIYERTTNSNESSNRDSKGGEHEVVFRLLCSNNVAGSVIGKRGAIVRALESKTGASIIFAAPLSEHAERIVTISAIESLESCNSPAQDAVILVFARIIEDHIGKGFLQVSSMESPVTARLLVATSTVNSWSGNEGQVILELREVTGADIQILHGESVPNGASDDDVVVQITGEYRCVQNALYKITSRIRDNLSPNEAVTEARPKSNWKVNKDPVKGKPFSRGKSAFPSGRFLPRNAGVHAETILQNGELHTDLSENLERGRGNMFATVTNTTVEIIVSEHVFGSVYGEDGGNLDRIRQISGATVTVYDPSVGTSGGKVVISGTPDQTLAAQSLLQAFIQTGEVS*

>Glyma.09g200300.2.p sequence-type=predicted peptide transcript=Glyma.09g200300.2 locus=Glyma.09g200300 ID=Glyma.09g200300.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MQDPATSDTTDHQTTPSPSPSPKRKTTTTTTTTNRSNNKRPVFKVLPGQIAFRLVCHASIVGGLIGSSGSIVSQLRRETACKIHCEDSLSSAEDRVILVIGSVSPRKGLQLGDGGEVEVSSAQEAIVRVFERVWGLEAEKGVNSNRAVNSEVFSKLLAHTSQIGAVVGKGGKNITAIRNSTGAKIRVCPPPQCATKDEELVLITGGILAVKKALISVSHCLQDCPPLCKVPVSSSIPTVSSFDRSSSDPNAELFPRLNSLLTSMEGLSIYERTTNSNESSNRDSKGGEHEVVFRLLCSNNVAGSVIGKRGAIVRALESKTGASIIFAAPLSEHAERIVTISAIESLESCNSPAQDAVILVFARIIEDHIGKGFLQVSSMESPVTARLLVATSTVNSWSGNEGQVILELREVTGADIQILHGESVPNGASDDDVVVQVHL*

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