Glyma.09g199500

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Report for Sequence Feature Glyma.09g199500

Feature Type:	gene_model
Chromosome:	Gm09
Start:	42391245
stop:	42396747
Source:	JGI
Version:	Wm82.a2.v1
High confidence:	yes

A previous version of this gene model can be found here:

Annotations for Glyma.09g199500

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G65490.1	AT		JGI	N/A	IEA
GO:0006366	GO-bp	transcription by RNA polymerase II	EnsemblGenomes	N/A	IEA
GO:1903506	GO-bp	regulation of nucleic acid-templated transcription	EnsemblGenomes	N/A	IEA
GO:1903508	GO-bp	positive regulation of nucleic acid-templated transcription	EnsemblGenomes	N/A	IEA
GO:0005634	GO-cc	nucleus	EnsemblGenomes	N/A	IEA
GO:0003713	GO-mf	transcription coactivator activity	EnsemblGenomes	N/A	IEA
KOG2406	KOG	MADS box transcription factor	JGI	N/A	IEA
PTHR13060	Panther	SGT1 PROTEIN (HSGT1) (SUPPRESSOR OF GCR2)	JGI	N/A	IEA
PF07093	PFAM	SGT1 protein	JGI	N/A	IEA

Expression Patterns of Glyma.09g199500

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.09g199500 not represented in the dataset	Glyma.09g199500 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.

Gene information in GlycineMine developed by LIS.

Related Plant Genes

Gene families from PhyloGenes.

Paralogs of Glyma.09g199500

Paralog	Evidence	Comments
Glyma.01g022800	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.09g199500 Gene Call Version Wm82.a2.v1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma09g33210	Wm82.a1.v1.1	IGC	As supplied by JGI

Transcripts of Glyma.09g199500

Limit To All Plant Sequences

>Glyma.09g199500.2 sequence-type=transcript locus=Glyma.09g199500 ID=Glyma.09g199500.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
AGCTATATATACTGCGTAATTTTTTATTCATTCTGTTCATACGTAGCCTGGAAGCTTCAAAAAGGGTTTATGAAGAAAGGTTGTTTCCCGAACACTAGAGTCTAGAGAAGTTTGCAGAGTGAGCAACTGAGCATACGCAATGGAGTTCCCTTCTTCCTCCTCCATCTTCTCCCCGCGCCCATCAGACGACACCGTTTTCTACGCCATATACCccgactcccccaccacaacctccaccgccacgctccgctccctccaccTCAAAATTCTCGAAACCCTATCTCCCTTCACCGAAGACTACATATGGCAGCACCAACCCTTCACCCTCTCCGTTTCAActcctccgaacccttcctgcccctgcccctcctcctcctcccacctcctccacctccacggccgcctccGCTTCGGCGACAACCTCGACGACGAGTGGTTCGCCGTCTTCCTCCTCTTCCGAATCTCACAACGCTTCCCTTCACTCTCCATTCGAATCTGGGACTCCGACGGCGACTTCCTTCTCATCGAGGCTGCCTTCCACCTCCCCCGCTGGCTCAACCCCGACACTGCGCACCACCGCCTCTTCCTCCGCAACGGAAGCCTCCACATCGTGCCGCGTAACCGCCTCACCAACCCCTCCCTCATTGATTCCCTCAATTTTGTCGCTAGTTCCCCTCACGAATCCCTCGCCTCGGACGCAATCCAGCGCGCCATCAAAAAACGCATCAGTAATTACCCTGAACAAGCTAGGAATAACATGCATAGGGTTAGGGTTAGGGTTCCGGTGTCGGCGGCGTCTATTTTAAAGCACGAGCCAAGGTTAATTTCGCTGGCAGTGGAGGGGTTCTATGATAGAGATATAGACACGATGAAGTTCGCGGCGAGGATGGAGAGGTTTGTGGAGAGAGGGAAAACAGAGGAGTTGGTGTGTGTTTCGGTGAAGATGTCGAGGGCGATGTACGCGCAGTTGGCGCAGCAGAGGTTTCAGGCTCCGAAGTGCTACCCTGAGATGCCGGCTCGGAGCGAGAGGGAAGGGTTTGCGGAGGCGGAGCTGGGGATGAAGATAGCGTGTGGGTTGGAGATGATGTATCAGCAGCGGAAGCGAGACGGGGAGGAAGGGAAAGGGAGCTCTTGGGAGGCGTTTAGGAAGAGTTTGGAGAACAGTGGGTACTTCCAAGGACAGCTTCCGGGTTCCTCTGAGTACCAGAGATTGATGCAGAGTGCTCAGGAGTATTATAGGAGCACTTCTCTGCACTCCAAGGCCAGTGACTTGCTGAATGCTCCTGTTAGACGCATAGATGAAATTCTTGCTTTGCCTCATTCGGTGGATGATTTTAAGGATCAGGAGGTTCCTCCATCTGATGATGATTCCTGGCTTTACGGTGGAGAGGAAGAGTTGAACTCTGTTCTTATGGAAAGACAAAAGGAGATGGAACTATATGACTTAAAACACAAAAAGAAAGGGAAAGCAAAAGAGGGTCAAGATGCTGGTCCATCATCTGCTTCAAATGCTGACGAGTTTGATCCCAGTGATATAGCAAAAACCATGCAGGCATTTGTCCATAAGTTGTCAAGTTACAAGGGTGCTGAAGCTCCTGAAGATAGGAATAAGGAAGTGAACCTTGATGTGGACCAATTTATTAAAGACATGGAATCAATAATGATGCATTCAGACGGTGAAGTTGCCAACAGTAATATTGAAGAAGGATCGTCGTCTGATCTGGACTTTGTGATATTGTTGAATTGGATGAGGATAATGAGGACAGAGAGGATATTTTCATGCGGTCCTATTCTGATGCTATGAATGAAGAGCTAAAGGCAACAACCCTTCAGAAAAGTTTTGTTCGTGCTAATGAACAAATTCCAAAGAAGGATCAGGGAACGTCAAATGCATCTGAACATATTATGGACGAGGATTTTTCTCCTGTAGACGTGGATGTAAATTTAGTAAAAAGCTTACTCGATTCCTTTTCTTCCCAGCAAGGGCTTCCTGGTCCGGCTTCCAATTTGCTTGGCCTCATGGGGGTGCAGTTGCCACAAGATGGCAAGAAGGGCAAATGAAGATACTGAAATATTTTTCCAGGTTTTTGATGTTTTGGGATTCTCCAACGGTATAGTCTCTGGATGGCATGTTTCCTAGCTTGTTTACCGATATCCTTTATCCACATTGGGTAGGCACCTGCTTAGCAGAGGGCATATGGGAATACTTGCTAGTCCCGGTGTGACTGGACCAGGTTTTGGCACTCCATTTGAATAGAAGTGTCTTCTTTCCTTGCCTCCAGAGAAAAGCAAGAGAAACGTTCATTGGCAGTAATACAAGTGGCAAGAGAAGTCTAGGAAATTGGAAATTGGATAACTATCTTATGTAGCAAATCTGTTTAAATCAGAAATGATACTAAATGATTCCCAACAGGGGTTTATATTGAGGTTGGCATCCACTATTAACAGTTGATCATTGCTCCCCTTTTTTTTGGGTTAAGCGATTTCCGTTTAATAATGTTGCAATTACTGTTCTAGTTAAATCTGAATTTCTACCAAGCCATAAAATTATCATTACCGAATTACACT

Coding sequences of Glyma.09g199500

Limit To All Plant Sequences

>Glyma.09g199500.1 sequence-type=CDS polypeptide=Glyma.09g199500.1.p locus=Glyma.09g199500 ID=Glyma.09g199500.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGAGTTCCCTTCTTCCTCCTCCATCTTCTCCCCGCGCCCATCAGACGACACCGTTTTCTACGCCATATACCCCGACTCCCCCACCACAACCTCCACCGCCACGCTCCGCTCCCTCCACCTCAAAATTCTCGAAACCCTATCTCCCTTCACCGAAGACTACATATGGCAGCACCAACCCTTCACCCTCTCCGTTTCAACTCCTCCGAACCCTTCCTGCCCCTGCCCCTCCTCCTCCTCCCACCTCCTCCACCTCCACGGCCGCCTCCGCTTCGGCGACAACCTCGACGACGAGTGGTTCGCCGTCTTCCTCCTCTTCCGAATCTCACAACGCTTCCCTTCACTCTCCATTCGAATCTGGGACTCCGACGGCGACTTCCTTCTCATCGAGGCTGCCTTCCACCTCCCCCGCTGGCTCAACCCCGACACTGCGCACCACCGCCTCTTCCTCCGCAACGGAAGCCTCCACATCGTGCCGCGTAACCGCCTCACCAACCCCTCCCTCATTGATTCCCTCAATTTTGTCGCTAGTTCCCCTCACGAATCCCTCGCCTCGGACGCAATCCAGCGCGCCATCAAAAAACGCATCAGTAATTACCCTGAACAAGCTAGGAATAACATGCATAGGGTTAGGGTTAGGGTTCCGGTGTCGGCGGCGTCTATTTTAAAGCACGAGCCAAGGTTAATTTCGCTGGCAGTGGAGGGGTTCTATGATAGAGATATAGACACGATGAAGTTCGCGGCGAGGATGGAGAGGTTTGTGGAGAGAGGGAAAACAGAGGAGTTGGTGTGTGTTTCGGTGAAGATGTCGAGGGCGATGTACGCGCAGTTGGCGCAGCAGAGGTTTCAGGCTCCGAAGTGCTACCCTGAGATGCCGGCTCGGAGCGAGAGGGAAGGGTTTGCGGAGGCGGAGCTGGGGATGAAGATAGCGTGTGGGTTGGAGATGATGTATCAGCAGCGGAAGCGAGACGGGGAGGAAGGGAAAGGGAGCTCTTGGGAGGCGTTTAGGAAGAGTTTGGAGAACAGTGGGTACTTCCAAGGACAGCTTCCGGGTTCCTCTGAGTACCAGAGATTGATGCAGAGTGCTCAGGAGTATTATAGGAGCACTTCTCTGCACTCCAAGGCCAGTGACTTGCTGAATGCTCCTGTTAGACGCATAGATGAAATTCTTGCTTTGCCTCATTCGGTGGATGATTTTAAGGATCAGGAGGTTCCTCCATCTGATGATGATTCCTGGCTTTACGGTGGAGAGGAAGAGTTGAACTCTGTTCTTATGGAAAGACAAAAGGAGATGGAACTATATGACTTAAAACACAAAAAGAAAGGGAAAGCAAAAGAGGGTCAAGATGCTGGTCCATCATCTGCTTCAAATGCTGACGAGTTTGATCCCAGTGATATAGCAAAAACCATGCAGGCATTTGTCCATAAGTTGTCAAGTTACAAGGGTGCTGAAGCTCCTGAAGATAGGAATAAGGAAGTGAACCTTGATGTGGACCAATTTATTAAAGACATGGAATCAATAATGATGCATTCAGACGGTGAAGTTGCCAACAGTAATATTGAAGAAGGATCGTCGTCTGATCTGGACTTTGATAATTCTGATGACAGTGATATTGTTGAATTGGATGAGGATAATGAGGACAGAGAGGATATTTTCATGCGGTCCTATTCTGATGCTATGAATGAAGAGCTAAAGGCAACAACCCTTCAGAAAAGTTTTGTTCGTGCTAATGAACAAATTCCAAAGAAGGATCAGGGAACGTCAAATGCATCTGAACATATTATGGACGAGGATTTTTCTCCTGTAGACGTGGATGTAAATTTAGTAAAAAGCTTACTCGATTCCTTTTCTTCCCAGCAAGGGCTTCCTGGTCCGGCTTCCAATTTGCTTGGCCTCATGGGGGTGCAGTTGCCACAAGATGGCAAGAAGGGCAAATGA

>Glyma.09g199500.2 sequence-type=CDS polypeptide=Glyma.09g199500.2.p locus=Glyma.09g199500 ID=Glyma.09g199500.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGAGTTCCCTTCTTCCTCCTCCATCTTCTCCCCGCGCCCATCAGACGACACCGTTTTCTACGCCATATACCCCGACTCCCCCACCACAACCTCCACCGCCACGCTCCGCTCCCTCCACCTCAAAATTCTCGAAACCCTATCTCCCTTCACCGAAGACTACATATGGCAGCACCAACCCTTCACCCTCTCCGTTTCAACTCCTCCGAACCCTTCCTGCCCCTGCCCCTCCTCCTCCTCCCACCTCCTCCACCTCCACGGCCGCCTCCGCTTCGGCGACAACCTCGACGACGAGTGGTTCGCCGTCTTCCTCCTCTTCCGAATCTCACAACGCTTCCCTTCACTCTCCATTCGAATCTGGGACTCCGACGGCGACTTCCTTCTCATCGAGGCTGCCTTCCACCTCCCCCGCTGGCTCAACCCCGACACTGCGCACCACCGCCTCTTCCTCCGCAACGGAAGCCTCCACATCGTGCCGCGTAACCGCCTCACCAACCCCTCCCTCATTGATTCCCTCAATTTTGTCGCTAGTTCCCCTCACGAATCCCTCGCCTCGGACGCAATCCAGCGCGCCATCAAAAAACGCATCAGTAATTACCCTGAACAAGCTAGGAATAACATGCATAGGGTTAGGGTTAGGGTTCCGGTGTCGGCGGCGTCTATTTTAAAGCACGAGCCAAGGTTAATTTCGCTGGCAGTGGAGGGGTTCTATGATAGAGATATAGACACGATGAAGTTCGCGGCGAGGATGGAGAGGTTTGTGGAGAGAGGGAAAACAGAGGAGTTGGTGTGTGTTTCGGTGAAGATGTCGAGGGCGATGTACGCGCAGTTGGCGCAGCAGAGGTTTCAGGCTCCGAAGTGCTACCCTGAGATGCCGGCTCGGAGCGAGAGGGAAGGGTTTGCGGAGGCGGAGCTGGGGATGAAGATAGCGTGTGGGTTGGAGATGATGTATCAGCAGCGGAAGCGAGACGGGGAGGAAGGGAAAGGGAGCTCTTGGGAGGCGTTTAGGAAGAGTTTGGAGAACAGTGGGTACTTCCAAGGACAGCTTCCGGGTTCCTCTGAGTACCAGAGATTGATGCAGAGTGCTCAGGAGTATTATAGGAGCACTTCTCTGCACTCCAAGGCCAGTGACTTGCTGAATGCTCCTGTTAGACGCATAGATGAAATTCTTGCTTTGCCTCATTCGGTGGATGATTTTAAGGATCAGGAGGTTCCTCCATCTGATGATGATTCCTGGCTTTACGGTGGAGAGGAAGAGTTGAACTCTGTTCTTATGGAAAGACAAAAGGAGATGGAACTATATGACTTAAAACACAAAAAGAAAGGGAAAGCAAAAGAGGGTCAAGATGCTGGTCCATCATCTGCTTCAAATGCTGACGAGTTTGATCCCAGTGATATAGCAAAAACCATGCAGGCATTTGTCCATAAGTTGTCAAGTTACAAGGGTGCTGAAGCTCCTGAAGATAGGAATAAGGAAGTGAACCTTGATGTGGACCAATTTATTAAAGACATGGAATCAATAATGATGCATTCAGACGGTGAAGTTGCCAACAGTAATATTGAAGAAGGATCGTCGTCTGATCTGGACTTTGTGATATTGTTGAATTGGATGAGGATAATGAGGACAGAGAGGATATTTTCATGCGGTCCTATTCTGATGCTATGA

Predicted protein sequences of Glyma.09g199500

Limit To All Plant Sequences

>Glyma.09g199500.1.p sequence-type=predicted peptide transcript=Glyma.09g199500.1 locus=Glyma.09g199500 ID=Glyma.09g199500.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MEFPSSSSIFSPRPSDDTVFYAIYPDSPTTTSTATLRSLHLKILETLSPFTEDYIWQHQPFTLSVSTPPNPSCPCPSSSSHLLHLHGRLRFGDNLDDEWFAVFLLFRISQRFPSLSIRIWDSDGDFLLIEAAFHLPRWLNPDTAHHRLFLRNGSLHIVPRNRLTNPSLIDSLNFVASSPHESLASDAIQRAIKKRISNYPEQARNNMHRVRVRVPVSAASILKHEPRLISLAVEGFYDRDIDTMKFAARMERFVERGKTEELVCVSVKMSRAMYAQLAQQRFQAPKCYPEMPARSEREGFAEAELGMKIACGLEMMYQQRKRDGEEGKGSSWEAFRKSLENSGYFQGQLPGSSEYQRLMQSAQEYYRSTSLHSKASDLLNAPVRRIDEILALPHSVDDFKDQEVPPSDDDSWLYGGEEELNSVLMERQKEMELYDLKHKKKGKAKEGQDAGPSSASNADEFDPSDIAKTMQAFVHKLSSYKGAEAPEDRNKEVNLDVDQFIKDMESIMMHSDGEVANSNIEEGSSSDLDFDNSDDSDIVELDEDNEDREDIFMRSYSDAMNEELKATTLQKSFVRANEQIPKKDQGTSNASEHIMDEDFSPVDVDVNLVKSLLDSFSSQQGLPGPASNLLGLMGVQLPQDGKKGK*

>Glyma.09g199500.2.p sequence-type=predicted peptide transcript=Glyma.09g199500.2 locus=Glyma.09g199500 ID=Glyma.09g199500.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MEFPSSSSIFSPRPSDDTVFYAIYPDSPTTTSTATLRSLHLKILETLSPFTEDYIWQHQPFTLSVSTPPNPSCPCPSSSSHLLHLHGRLRFGDNLDDEWFAVFLLFRISQRFPSLSIRIWDSDGDFLLIEAAFHLPRWLNPDTAHHRLFLRNGSLHIVPRNRLTNPSLIDSLNFVASSPHESLASDAIQRAIKKRISNYPEQARNNMHRVRVRVPVSAASILKHEPRLISLAVEGFYDRDIDTMKFAARMERFVERGKTEELVCVSVKMSRAMYAQLAQQRFQAPKCYPEMPARSEREGFAEAELGMKIACGLEMMYQQRKRDGEEGKGSSWEAFRKSLENSGYFQGQLPGSSEYQRLMQSAQEYYRSTSLHSKASDLLNAPVRRIDEILALPHSVDDFKDQEVPPSDDDSWLYGGEEELNSVLMERQKEMELYDLKHKKKGKAKEGQDAGPSSASNADEFDPSDIAKTMQAFVHKLSSYKGAEAPEDRNKEVNLDVDQFIKDMESIMMHSDGEVANSNIEEGSSSDLDFVILLNWMRIMRTERIFSCGPILML*

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