SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma.09g193800

Feature Type:gene_model
Chromosome:Gm09
Start:41830881
stop:41834537
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.09g193800
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G67280.1AT Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily protein JGI N/AIEA
GO:0004462GO-mf lactoylglutathione lyase activity EnsemblGenomesN/AIEA
GO:0046872GO-mf metal ion binding EnsemblGenomesN/AIEA
KOG2943 KOG Predicted glyoxalase JGI N/AIEA
KOG2944 KOG Glyoxalase JGI N/AIEA
PTHR10374Panther LACTOYLGLUTATHIONE LYASE (GLYOXALASE I) JGI N/AIEA
PTHR10374:SF0Panther JGI N/AIEA
PF00903PFAM Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily JGI N/AIEA
PWY-5386SoyCyc9 methylglyoxal degradation I Plant Metabolic Network ISS
GN7V-58194SoyCyc9-rxn lactoylglutathione lyase Plant Metabolic Network ISS

Proteins Associated with Glyma.09g193800
LocusGene SymbolProtein Name
GLYI-11 Glyoxylase 1 gene 11

Expression Patterns of Glyma.09g193800
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.09g193800
ParalogEvidenceComments
Glyma.01g146300 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.09g193800 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma09g32650 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.09g193800
>Glyma.09g193800.2 sequence-type=transcript locus=Glyma.09g193800 ID=Glyma.09g193800.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
AAAAGCCCTGTGATCTTATTCTTAGCTTTAAACATTTGAGTTTGTTATTCTTTTCTTTCTGTTTCACAACATTAATTCACTTCACTCTGTACATTGTTTTCTCCTTCCATGGCTTCTTCAATTCGTCCCTCACTTTCTTCCTTCATGTTACCCTCCCTCCGCTCTTGCAACCCTTCTGAAAAGCTCTCTCTTTTTCATCTCGGTAGCGGTATTAGACTGTATCATAAGTTTGGCCTGAAATCTTCTAGGCTTTTAAGACATGATGATAATAAGTGCATGAGAGTGATGGCATCTGGGAACATGTCCACAGCTGCTACACAGGAAAATGTGCTCGATTGGGTCAAACATGACAAGAGAAGAATGCTTCATGTTGTGTATCGTGTTGGGGACTTGGACAAGAGCATAAAATTTTATAGAGAGTGCCTTGGAATGAAGTTGCTCAGAAAGCGCGACATGCAAGAACAGAGATATACTAATGCCTTTCTTGGATATGGCCCTGAGGATGCACACTTTGTTGCTGAACTGACATACAATTATGGGATTGATAAGTATGACATTGGAGATGGATTTGGCCATTTTGGTCTTGCTGTTGATGATATTTCAAGAATAGTGGAACTTGTTAGAGCCAAGGGAGGGAAAATTACTAGAGAGCCTAGTCCTGTCAAGGGAGGCAACTCAACAATTGCATATATTGAAGATCCTGATGGTTATCAATTTGAACTTTCCGAAAGGGTTTCCTCTCCTGAGCCTTTGAGCAAAGTAATGCTTCGAGTGGGTGATCTTGATCGTTCCATTAAATTTTATGAGAAGGCTTTTGGTATGGAGCTACTTCGAACACAAGATGATCCAGAGTCTAAGGTGGTTAGTGGTGAAAATCAGCCTTCTCCTGGGGCTATCAGAGGGTTGTTGAACAGCTCGTGCCTTTGAGACAAATGAACATGATACTAATGATACACCGAGGATTTTATTGTTGCTGACTCCAATACAATCCATTTGTATTTAATTGGTTTTAGATGTCACTTGAATTGTATATGTATGTAATTGTCCTTAAAATTACCTGTGAAGATTAGCAGACCAGTATCCCTATGAGGTTACAACTGTCAAGAAGA
Coding sequences of Glyma.09g193800
>Glyma.09g193800.1 sequence-type=CDS polypeptide=Glyma.09g193800.1.p locus=Glyma.09g193800 ID=Glyma.09g193800.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCTTCTTCAATTCGTCCCTCACTTTCTTCCTTCATGTTACCCTCCCTCCGCTCTTGCAACCCTTCTGAAAAGCTCTCTCTTTTTCATCTCGGTAGCGGTATTAGACTGTATCATAAGTTTGGCCTGAAATCTTCTAGGCTTTTAAGACATGATGATAATAAGTGCATGAGAGTGATGGCATCTGGGAACATGTCCACAGCTGCTACACAGGAAAATGTGCTCGATTGGGTCAAACATGACAAGAGAAGAATGCTTCATGTTGTGTATCGTGTTGGGGACTTGGACAAGAGCATAAAATTTTATAGAGAGTGCCTTGGAATGAAGTTGCTCAGAAAGCGCGACATGCAAGAACAGAGATATACTAATGCCTTTCTTGGATATGGCCCTGAGGATGCACACTTTGTTGCTGAACTGACATACAATTATGGGATTGATAAGTATGACATTGGAGATGGATTTGGCCATTTTGGTCTTGCTGTTGATGATATTTCAAGAATAGTGGAACTTGTTAGAGCCAAGGGAGGGAAAATTACTAGAGAGCCTAGTCCTGTCAAGGGAGGCAACTCAACAATTGCATATATTGAAGATCCTGATGGTTATCAATTTGAACTTTCCGAAAGGGTTTCCTCTCCTGAGCCTTTGAGCAAAGTAATGCTTCGAGTGGGTGATCTTGATCGTTCCATTAAATTTTATGAGAAGGCTTTTGGTATGGAGCTACTTCGAACACAAGATGATCCAGAGTCTAAGAGTACAATAGCAATACTGGGTTATGGTCCAGAGGAAAAAAACACTGTCCTGGAATTGACTTACAACTATGGAGTCACAGATTATGATAAAGGAGATGCTTATGCTCAGATTACAATAGGCACAGATGATGTGTACAAAACTGCAGAAGCAATCAAACTTGCAGGAGGGAAGATTACTCGGGAACCTGGACCTGTACCTGGTATCAAAACGAAGATCACATTGTGTGTTGATCCTGATGGTTGGAAAACTGTTTTTGTAGATAATGTTGACTTTCGTAGGGAGTTGGAATAG

>Glyma.09g193800.2 sequence-type=CDS polypeptide=Glyma.09g193800.2.p locus=Glyma.09g193800 ID=Glyma.09g193800.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCTTCTTCAATTCGTCCCTCACTTTCTTCCTTCATGTTACCCTCCCTCCGCTCTTGCAACCCTTCTGAAAAGCTCTCTCTTTTTCATCTCGGTAGCGGTATTAGACTGTATCATAAGTTTGGCCTGAAATCTTCTAGGCTTTTAAGACATGATGATAATAAGTGCATGAGAGTGATGGCATCTGGGAACATGTCCACAGCTGCTACACAGGAAAATGTGCTCGATTGGGTCAAACATGACAAGAGAAGAATGCTTCATGTTGTGTATCGTGTTGGGGACTTGGACAAGAGCATAAAATTTTATAGAGAGTGCCTTGGAATGAAGTTGCTCAGAAAGCGCGACATGCAAGAACAGAGATATACTAATGCCTTTCTTGGATATGGCCCTGAGGATGCACACTTTGTTGCTGAACTGACATACAATTATGGGATTGATAAGTATGACATTGGAGATGGATTTGGCCATTTTGGTCTTGCTGTTGATGATATTTCAAGAATAGTGGAACTTGTTAGAGCCAAGGGAGGGAAAATTACTAGAGAGCCTAGTCCTGTCAAGGGAGGCAACTCAACAATTGCATATATTGAAGATCCTGATGGTTATCAATTTGAACTTTCCGAAAGGGTTTCCTCTCCTGAGCCTTTGAGCAAAGTAATGCTTCGAGTGGGTGATCTTGATCGTTCCATTAAATTTTATGAGAAGGCTTTTGGTATGGAGCTACTTCGAACACAAGATGATCCAGAGTCTAAGGTGGTTAGTGGTGAAAATCAGCCTTCTCCTGGGGCTATCAGAGGGTTGTTGAACAGCTCGTGCCTTTGA
Predicted protein sequences of Glyma.09g193800
>Glyma.09g193800.1.p sequence-type=predicted peptide transcript=Glyma.09g193800.1 locus=Glyma.09g193800 ID=Glyma.09g193800.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MASSIRPSLSSFMLPSLRSCNPSEKLSLFHLGSGIRLYHKFGLKSSRLLRHDDNKCMRVMASGNMSTAATQENVLDWVKHDKRRMLHVVYRVGDLDKSIKFYRECLGMKLLRKRDMQEQRYTNAFLGYGPEDAHFVAELTYNYGIDKYDIGDGFGHFGLAVDDISRIVELVRAKGGKITREPSPVKGGNSTIAYIEDPDGYQFELSERVSSPEPLSKVMLRVGDLDRSIKFYEKAFGMELLRTQDDPESKSTIAILGYGPEEKNTVLELTYNYGVTDYDKGDAYAQITIGTDDVYKTAEAIKLAGGKITREPGPVPGIKTKITLCVDPDGWKTVFVDNVDFRRELE*

>Glyma.09g193800.2.p sequence-type=predicted peptide transcript=Glyma.09g193800.2 locus=Glyma.09g193800 ID=Glyma.09g193800.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MASSIRPSLSSFMLPSLRSCNPSEKLSLFHLGSGIRLYHKFGLKSSRLLRHDDNKCMRVMASGNMSTAATQENVLDWVKHDKRRMLHVVYRVGDLDKSIKFYRECLGMKLLRKRDMQEQRYTNAFLGYGPEDAHFVAELTYNYGIDKYDIGDGFGHFGLAVDDISRIVELVRAKGGKITREPSPVKGGNSTIAYIEDPDGYQFELSERVSSPEPLSKVMLRVGDLDRSIKFYEKAFGMELLRTQDDPESKVVSGENQPSPGAIRGLLNSSCL*






Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
USDA Logo
Iowa State University Logo