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Report for Sequence Feature Glyma.09g191200

Feature Type:gene_model
Chromosome:Gm09
Start:41587926
stop:41592094
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.09g191200
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G13250.1AT NAD(P)-binding Rossmann-fold superfamily protein JGI N/AIEA
GO:0008152GO-bp metabolic process JGI N/AIEA
GO:0010304GO-bp PSII associated light-harvesting complex II catabolic process EnsemblGenomesN/AIEA
GO:0015996GO-bp chlorophyll catabolic process EnsemblGenomesN/AIEA
GO:0055114GO-bp oxidation-reduction process EnsemblGenomesN/AIEA
GO:0016020GO-cc membrane EnsemblGenomesN/AIEA
GO:0016021GO-cc integral component of membrane EnsemblGenomesN/AIEA
GO:0016491GO-mf oxidoreductase activity JGI N/AIEA
GO:0034256GO-mf chlorophyll(ide) b reductase activity EnsemblGenomesN/AIEA
KOG0725 KOG Reductases with broad range of substrate specificities JGI N/AIEA
PTHR24314Panther FAMILY NOT NAMED JGI N/AIEA
PTHR24314:SF37Panther JGI N/AIEA
PF00106PFAM short chain dehydrogenase JGI N/AIEA
PWY-5068SoyCyc9 chlorophyll cycle Plant Metabolic Network ISS
GN7V-62505SoyCyc9-rxn chlorophyll(ide) b reductase Plant Metabolic Network ISS

Proteins Associated with Glyma.09g191200
LocusGene SymbolProtein Name
NYC1_2 protein NON-YELLOW COLORING 1

Expression Patterns of Glyma.09g191200
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.09g191200
ParalogEvidenceComments
Glyma.07g085700 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.09g191200 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma09g32370 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.09g191200
>Glyma.09g191200.1 sequence-type=CDS polypeptide=Glyma.09g191200.1.p locus=Glyma.09g191200 ID=Glyma.09g191200.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCCACAGTTGTGAAGCTCCACGTTTTCCCAGAAAGTTTGAACCAACACAAAACGAGGTTGCTCAGGAGAGGCTTTGGCTCATGCCCTTCACCTGGGGTGCTTGGTTTTGGCCATAAAAATTATGATCAGTTCTCTGTGAAAGTGTGCAGGGCTTTTAGGACTGAGGATGGTGGGGATGTGAAGGAGAAAAAGTTTCGAAATTTGAAGAAAAATGAAGAGAAAACCAAAAGGGAAAGTGGGTTTTGGAGTTCCCTCAAGTCTATCTTGCTGAGGAATTTCATGGTGGGTTCAAAATCAGATGATGAGTATCGCCAAGCTGTGGTCAAGGTGGAGGGTCTCCTATCCTCGATTGCCATTCAAATTGGAAGGTATATTGTGACTATGATGAGCACTGGGGTCATCCTTTCAATTGGATTTCAGATGTCAGGTGGAGACAGTCAGATGGATGCATTAATATGGTATAGTTGGCTAGGAGGAGTAATCATTGGGACAATGATAGGTGCTAACATGGTGTTGGAGGAACATTGTCGCGCAGGTCCACGTAATGTTGTCATAACGGGGAGTACAAGGGGATTGGGCAAAGCCTTAGCTCGCGAGTTTCTTCTTTCCGGGGATCGTGTGATTGTTACCTCTCGCAGCCCCGAGTCTGTGCAAGACACTATCAAAGAGCTTGAGGAAAATCTAAAGGAAGGCATTGCCAATGCAGTTGGCTCTTCTCTGACAAAGCTTTCTCAAGCAAAAGTGATAGGCATTTCTTGTGATGTTTGTGAGCCTCATGATGTGCAGAGACTGGCTAACTTCGCTGTCAAAGAACTTGGTCATATTGACATTTGGATAAACAACGCCGGAACAAATAAAGGTTTTAGACCATTGCTTCAGTTTAGTGATGAAGATATTAAACAGATTGTCTCAACAAATTTGGTTGGATCTATCCTCTGCACACGAGAAGCTGTGCGTATTATGAGAAACCAAGCCAATGCAGGTCACATATTTAATATGGATGGTGCGGGTTCTGGAGGCTCTAGCACACCTTTAACTGCCGTATATGGTTCTACAAAGTGTGGCCTTAGGCAACTTCAAGGATCACTATTAAAGGAGTGCAAGCGATCCAAAGTAGGTGTCCATACTGCATCTCCTGGCATGGTTCTTACAGATCTGCTTTTAAGTGGCTCAACGGTCCAAAACAGGCAGATGTTTAACATCATCTGTGAGCTTCCCGAAACTGTTGCTAGAACACTAGTTCCACGGATGCGGGTTGTTAAGGGAACAGGCAAAGCTATCAATTACTTGACCCCTCCCAGAATCTTACTTGCTTTGATCACTGCTTGGTTACGGCAAGGTCGCTGGTTTGATGATCAGGGAAGAGCATTATATGCAGCTGAAGCAGACCGACTTCGTAATTGGGCCGAAGATCGAGCCCGGTTTTCTTTCACTGATGCAATGGAAATGTACACAGAGAACACCTGGTTATCAGTCTTCTCACTTTCAGTTGTCTGTGCCTTCATAATTCTTTCCAGCACAGGCAGCAATTTGCCTGGAACATGA
Predicted protein sequences of Glyma.09g191200
>Glyma.09g191200.1.p sequence-type=predicted peptide transcript=Glyma.09g191200.1 locus=Glyma.09g191200 ID=Glyma.09g191200.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MATVVKLHVFPESLNQHKTRLLRRGFGSCPSPGVLGFGHKNYDQFSVKVCRAFRTEDGGDVKEKKFRNLKKNEEKTKRESGFWSSLKSILLRNFMVGSKSDDEYRQAVVKVEGLLSSIAIQIGRYIVTMMSTGVILSIGFQMSGGDSQMDALIWYSWLGGVIIGTMIGANMVLEEHCRAGPRNVVITGSTRGLGKALAREFLLSGDRVIVTSRSPESVQDTIKELEENLKEGIANAVGSSLTKLSQAKVIGISCDVCEPHDVQRLANFAVKELGHIDIWINNAGTNKGFRPLLQFSDEDIKQIVSTNLVGSILCTREAVRIMRNQANAGHIFNMDGAGSGGSSTPLTAVYGSTKCGLRQLQGSLLKECKRSKVGVHTASPGMVLTDLLLSGSTVQNRQMFNIICELPETVARTLVPRMRVVKGTGKAINYLTPPRILLALITAWLRQGRWFDDQGRALYAAEADRLRNWAEDRARFSFTDAMEMYTENTWLSVFSLSVVCAFIILSSTGSNLPGT*






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