SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
|
A previous version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G19610.1 | AT | GNOM-like 2 | JGI | N/A | IEA |
| GO:0016192 | GO-bp | vesicle-mediated transport | EnsemblGenomes | N/A | IEA |
| GO:0032012 | GO-bp | regulation of ARF protein signal transduction | EnsemblGenomes | N/A | IEA |
| GO:0032012 | GO-bp | regulation of ARF protein signal transduction | JGI | N/A | IEA |
| GO:0065009 | GO-bp | regulation of molecular function | EnsemblGenomes | N/A | IEA |
| GO:0005802 | GO-cc | trans-Golgi network | EnsemblGenomes | N/A | IEA |
| GO:0005086 | GO-mf | ARF guanyl-nucleotide exchange factor activity | EnsemblGenomes | N/A | IEA |
| GO:0005086 | GO-mf | ARF guanyl-nucleotide exchange factor activity | JGI | N/A | IEA |
| GO:0005488 | GO-mf | binding | EnsemblGenomes | N/A | IEA |
| KOG0928 | KOG | Pattern-formation protein/guanine nucleotide exchange factor | JGI | N/A | IEA |
| PTHR10663 | Panther | GUANYL-NUCLEOTIDE EXCHANGE FACTOR | JGI | N/A | IEA |
| PTHR10663:SF6 | Panther | JGI | N/A | IEA | |
| PF01369 | PFAM | Sec7 domain | JGI | N/A | IEA |
|
Glyma.09g189000 not represented in the dataset |
Glyma.09g189000 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.
Gene information in GlycineMine developed by LIS.
Gene families from PhyloGenes.
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma.07g087800 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma09g32140 | Wm82.a1.v1.1 | IGC | As supplied by JGI |
>Glyma.09g189000.1 sequence-type=CDS polypeptide=Glyma.09g189000.1.p locus=Glyma.09g189000 ID=Glyma.09g189000.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGGAGAAAGAAGAAGATTTCATGCACGACGATGGAAGCAAGAAGGAAACAAGAAAATTCAAAAGAAGACAAATGGGACTCTCGTGCATGCTTAACACCGAAGTTGGTGCAGTTCTAGCAGTGATTCGTCGTCCAGAATTGACTCCTCTCTACAACATCCCTTCCTCCGAAGATAGCTGCGACTCTTCCGTCATCAGTTCCTTAAGATCCCTTCGCTCTCTCATCTTCAACCCTCAGCAAGAGTGGCGCACCATCGACCCTTCCATCTACCTCGCTCCCTTCCTTGATGTCATCCAAAGCGACGACGTTCCTGCCGCGGCCACCGGCGTGGCCCTCTCTTCTGTTCTCAAGATTCTTAAGTTTGAAGTTTTTGATGACAAGTCCCCCGGCGTAAGAGAGGGTATGGAGTCCATTGTCTCCGGGATCACCAGCTGCCGGCTCGAGAAAACTGACCCTGCTTCGGAGGATGCCGTGATGATGAAGATATTGCAAATTTTGACCGGGATAATGCACCACAGGGCTTCAGCTTTGCTCTCGGATCAATCTGTTTGCACCCTCGTCAACACGTGCTTTCAGGTTGTTCAACAATCCGCGACAAGAGGAGATTTGCTACAGAGGAGTGCGAGGTACACCATGCACGAGCTTATCCAGGTTGTGTTTACCAGGTTACCAGAGATTGAGGCCAAGGATAGAGAAGGGGACTCAGAATCAGACATGGAGGATGGTGATGAGGGCGGTGGCTTGGAATCTGGCTACGGTGTTCGTTGCGCCATTGATATCTTTCACTTCTTGTGCTCTTTGTTGAATGTTGTATCCATAGTTGAGGCAGATGGGTCTACTTCTCACACAGCTGATGAAGATGTTCAGATTTTTGCCTTGGTTTTGATAAACTCAGCCATTGAACTGAGTGGGGATGAAATAGGGAAGCACCCAAAGCTCTTAAGGATGATCCAAGATGACTTGTTTCACCATTTGATTTACTATGGGACATGGTCAAGCTCCTTTATCTTGTCCATGATTTGCAGCACCGTCTTGAATGCCTATCACTTTCTCCGAAGGTTTATTCGATTCCAACTAGAAGCATTCTTTGGATATGTGCTGTTTAGAATTGCAAGTTTTGGGAGCACAATTCCACTTCAAGAAGTGGCAGTTGAAGGAATAATAAATTTCTGCAGACAGCCAACATTCATCGTTGAAGTTTTTGCAAACTATGATTGTGATCCATGTTGCCGGAATGTGTTTGAGGAGGCTGGGAGGTTGCTTTGCAAGCACTCATTTGCACTAAATGGCCACCTCACTAGTTTGCACATTCAATCCTTTGAAGGCCTATTGATCATGATTCACAACATTGCAGATAACATTGACAAAGATGGTCATCATTTAGGTCCACACACAATTCAATTGCCCACGTATAGACCCTTTTGGGAGGAGATGGATAAAGAAGAAGAAGACTTGGAAGATTGGGTGAAACATGTAAGGATGAGAAGACTTCAGAAGAAGAAACTTTTGATTGCTGCAAACCATTTCAACAGAGATAATAAGAAGGGTCTTGAGTACTTGAAACATGCAAAGTTAATCTCTGATCCTCCTGATCCCAAGGCTTATGCTTACTTCTTTCGTTACACTCCTGGCATAAACAAGAAAGCAATAGGGGAATTTCTTGGAGACCCTGATGCTTTCTACCTCCAAGTTCTCAAAGAATTCACTGCAACCTTCCATTTCCAAGGCATGAATCTTGACACTGGCCTTAGGTTTTATCTAGAGAGTTTCTGGCTGCCAGGAGAGTCACAAAAGATTCAGCGTGTGCTTGAAGCATTCGCGGAGAGGTTTTACGACCATCAATCCTCAGACATGTTTGCAAGCAAGGACACTATTCTCATCTTGTGCTACTCCCTCATCATGCTTAACACTGATCAACACAACCCCCAAGTTAAGAAGAAGATGACAGAAGAGGAATTCATCAGGAACAATAGAGCAATCAATGCGGGAAAGGATTTGCCTAGAGAGTACCTTTCTGAGCTTTTCCAATCCATTTCCACTTGTGCATTTTCCCTAGAGAAAACCACTGTTTCACTAGACATGAACCCGAGTAGGTGGATTCAGATCATAAACCGATCCAAGGTGGTACAACCTTTCACCCAATGCGACTTCGATCGTAGAATATGTAGAGATATGTTTGCCTGCATTGCCGGTCCAGCAGTGGCTGCTCTTTCATCATTCTTTGAGCATGCTGATGAAGAGGAGATGCTCCATGAGTGCATTGAAGGGTTATTCTCAGTTGCAAGGATTTGTCAGTATGGACTAGAAGATACCCTTGATGAGCTCATAACATCATTTTGCAAATTCACAACACTACTAAATCCTTATGCTTCTATAGAAGAGACCATGTTCACCTTTAGTCATGATTTGAAGCCCAGGATGGCAACAGTTGCTGTTTTCACCATAGCAAACTACTTCAGAGACTCAATTCAAGGAGGTTGGAAGAACATTGTTGATTGCTTGTTGAAACTCAAAAGGCTTAAACTACTACCTCAATCTGTCATTGATTTTGAGTCGGTGGATGTCCCAACAACACCTGAATCAGGTGTCGTGTCTCCAACTGATGATCATAAATTTGGAAGCCAGAGAGTCGCTAGCATGATCTCTCGGTTTTTGCATCTTTCGTCAGAAAGCATGGAAGATGGTTTGACCCTTGGTAGTGAATTTGAACAGAACACCAAAATGATCAAAATGTGCAATATTGGTAGCATCTTCAGCAATTGTTCAAACATCCCCAAAGAATGCTTACAAAGCCTTGGGAGGTCTTTGATATTTGCAGCTGCTGGAAAAGGCCAAAAGTTCAGCACACCGGTGGAGGAAGAGGAAACGGTCGAGTTTTGTTGGGATTTGATCACTGCAATATCAATAGCCAATGTTCATAGATTCCACATATTCTGGCCCAACTTCCATGAGTACCTTCTTTCAGTTGCTCAGTTTCCCATGTTCTCCCCAATCCCATTTGTAGAAAAAGGTATTTTAGGCCTTCTCAAGGTCTGTCTCAAGCTCTTTTCTGCACCAAGAGACGAAAAACAAGCCGAGGAACTTATTTTCAAGTCCGTAAACTTAATGTGGAAGCTTGATATAGAAATCCTCGACACGTTTCACGATGTCATATCACATTCAAGTAGCAAAATACTGATTGAATACCATGCAAATTTGCAGACTCAAATAGGATGGAAGTCAGTGCTAAATCTGTTATCACCTGTTTGGAGGCATCCTGAGAACTATGATGTGGGATTTGAGGTCCTGATAGCATTATTTTCTGATGGCACTCGCTTATCACGCACAAACTATGGAGATTGCGTAGATTTTGCCTTTGGGTTTTTCTTAGCCAAGAACATTCCAGGGGAAAAAAAGAAGATGATACTAGACCTATTGGTTGGTTCAGTAAAAATGTTGATTCAATGGCACAGAAATCAATACACGGATCCGGGAAGCAATGCCAGTATAGCAAGCTACTCAAGCAATTCCTCCATAGAGGACTATTCAAGAGGTACTGTTGCTTCTGCAAACTTCATGAGCCAATTATCGAAACTTGGAGAAGTATTCAGAAGGACATGCTTATCAAGACAGGAGGAGGTAAGAAACCATGCAGTTTCTTCTCTTTACAAGAGCTTCAATCTAGCTGAGGAACTGTTTTACTTGTCGCCAAACTGCGAACACTATTTCAATTCTGTGATTTTTGCCATGGTTGATGAGATCCATGACAAGATGTTGGAGTACTCAAAGAGGGAAAATGCTGAGAGGGAAACAAGGAGTATGGAAGGGACCCTTAAGCTTGCAGTGGAGTTGTTGTCAGATATGTACTTGCAGTCATTCAGACAATTAACCGAGATTCCGGGATTTAGGGGAATCTGGTTAGGCTTATTGAGAAGGATGGACACATGCATGAAGGCTGATTTGGGACAGTATGGTTCATCAAATTTGGGTGAAATAGTCCGTAATTTGTTGAGAAAGATCATAACACAAATGAAGGATGAGGGAATTTTGGAACCAAGAGAAGAAGATGATATGTGGGAGATTACATATATTCAGATACAATGGTCATGCCCTAGTCTCAAGGATGAGTTATTTCCCTTATAG
>Glyma.09g189000.1.p sequence-type=predicted peptide transcript=Glyma.09g189000.1 locus=Glyma.09g189000 ID=Glyma.09g189000.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 MEKEEDFMHDDGSKKETRKFKRRQMGLSCMLNTEVGAVLAVIRRPELTPLYNIPSSEDSCDSSVISSLRSLRSLIFNPQQEWRTIDPSIYLAPFLDVIQSDDVPAAATGVALSSVLKILKFEVFDDKSPGVREGMESIVSGITSCRLEKTDPASEDAVMMKILQILTGIMHHRASALLSDQSVCTLVNTCFQVVQQSATRGDLLQRSARYTMHELIQVVFTRLPEIEAKDREGDSESDMEDGDEGGGLESGYGVRCAIDIFHFLCSLLNVVSIVEADGSTSHTADEDVQIFALVLINSAIELSGDEIGKHPKLLRMIQDDLFHHLIYYGTWSSSFILSMICSTVLNAYHFLRRFIRFQLEAFFGYVLFRIASFGSTIPLQEVAVEGIINFCRQPTFIVEVFANYDCDPCCRNVFEEAGRLLCKHSFALNGHLTSLHIQSFEGLLIMIHNIADNIDKDGHHLGPHTIQLPTYRPFWEEMDKEEEDLEDWVKHVRMRRLQKKKLLIAANHFNRDNKKGLEYLKHAKLISDPPDPKAYAYFFRYTPGINKKAIGEFLGDPDAFYLQVLKEFTATFHFQGMNLDTGLRFYLESFWLPGESQKIQRVLEAFAERFYDHQSSDMFASKDTILILCYSLIMLNTDQHNPQVKKKMTEEEFIRNNRAINAGKDLPREYLSELFQSISTCAFSLEKTTVSLDMNPSRWIQIINRSKVVQPFTQCDFDRRICRDMFACIAGPAVAALSSFFEHADEEEMLHECIEGLFSVARICQYGLEDTLDELITSFCKFTTLLNPYASIEETMFTFSHDLKPRMATVAVFTIANYFRDSIQGGWKNIVDCLLKLKRLKLLPQSVIDFESVDVPTTPESGVVSPTDDHKFGSQRVASMISRFLHLSSESMEDGLTLGSEFEQNTKMIKMCNIGSIFSNCSNIPKECLQSLGRSLIFAAAGKGQKFSTPVEEEETVEFCWDLITAISIANVHRFHIFWPNFHEYLLSVAQFPMFSPIPFVEKGILGLLKVCLKLFSAPRDEKQAEELIFKSVNLMWKLDIEILDTFHDVISHSSSKILIEYHANLQTQIGWKSVLNLLSPVWRHPENYDVGFEVLIALFSDGTRLSRTNYGDCVDFAFGFFLAKNIPGEKKKMILDLLVGSVKMLIQWHRNQYTDPGSNASIASYSSNSSIEDYSRGTVASANFMSQLSKLGEVFRRTCLSRQEEVRNHAVSSLYKSFNLAEELFYLSPNCEHYFNSVIFAMVDEIHDKMLEYSKRENAERETRSMEGTLKLAVELLSDMYLQSFRQLTEIPGFRGIWLGLLRRMDTCMKADLGQYGSSNLGEIVRNLLRKIITQMKDEGILEPREEDDMWEITYIQIQWSCPSLKDELFPL*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
|
|
|
