Glyma.09g187300

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Report for Sequence Feature Glyma.09g187300

Feature Type:	gene_model
Chromosome:	Gm09
Start:	41195049
stop:	41199507
Source:	JGI
Version:	Wm82.a2.v1
High confidence:	yes

A previous version of this gene model can be found here:

Annotations for Glyma.09g187300

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G68660.1	AT	Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family protein	JGI	N/A	IEA
GO:0030163	GO-bp	protein catabolic process	EnsemblGenomes	N/A	IEA
GO:0030163	GO-bp	protein catabolic process	JGI	N/A	IEA
PF02617	PFAM	ATP-dependent Clp protease adaptor protein ClpS	JGI	N/A	IEA

Expression Patterns of Glyma.09g187300

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.09g187300 not represented in the dataset	Glyma.09g187300 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.

Gene information in GlycineMine developed by LIS.

Related Plant Genes

Gene families from PhyloGenes.

Paralogs of Glyma.09g187300

Paralog	Evidence	Comments
Glyma.07g089500	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.09g187300 Gene Call Version Wm82.a2.v1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma09g31940	Wm82.a1.v1.1	IGC	As supplied by JGI

Transcripts of Glyma.09g187300

Limit To All Plant Sequences

>Glyma.09g187300.2 sequence-type=transcript locus=Glyma.09g187300 ID=Glyma.09g187300.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
AACGTGTGAAACCAAATTCAGTGTGCACCTTACAAAATCTCTTTCACCCACCCAAAAAAATCAGTGTGGTAACGACAAAGACAATGTTGGACTTTTTCTCTTCCACTAGAACTACATACTACCCTTCTATAGTTCTGTTGTTATAGGAGCTAATTAACTGCTCCAACAACCACAAAGAGACTGAAAGAACAGCAATGGAAGCTGCATTATGCAGTGCACTTGCTCTTTCACCCAATCAAGTATTCAATGCAGCAAATCCTGGAGATAAAAATGTTCCTTTGAAATATAGCAAAGATCGGAGTGTTGTAATGACAGTGGCAGCCACTGGAATATTAGGGAAAGGTGGTGGGTTGTTGGAGAGGCCAACCATAGAGACAACATCACCTGGTCGGGAATCTGAATTTGACTTAAGGAAATCGCGGAAAACATCCCCACCTTACCGAGTTTTGCTGCACAATGACAACTTCAACAAGCGAGAATATGTTGTGCAAGTGTTGATGAAGGTGATACCTGGAATGACAATTGATAATGCGGTTAACATCATGCAGGAGGCACATTATAATGGACTAGCAGTGGTGATAGTATGTGCTCAAGTGGATGCTGAAGACCACTGCATGCAGTTAAGAGGAAACGGCCTTCTAAGTTCAATTGAGCCAGCTGATGGTGGTGGTTGTTGATACATAGAGAGACCATTGACATGAGCTTTTGGCCTAATAGTTTCATTGGAGAGGTTGAACAACGAACGATCTGGAACAGGGAAATAATTGTGTGGGCTGGTATGAGGGTATCGTCTAACGAGGTAATATCTATTTGTTTAAATTTTTAAAAATATTTTTTTAAAAATAAACAAAAATTTATTTTAAAAAATTTTGTTTTAA

>Glyma.09g187300.3 sequence-type=transcript locus=Glyma.09g187300 ID=Glyma.09g187300.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
AACGTGTGAAACCAAATTCAGTGTGCACCTTACAAAATCTCTTTCACCCACCCAAAAAAATCAGTGTGGTAACGACAAAGACAATGTTGGACTTTTTCTCTTCCACTAGAACTACATACTACCCTTCTATAGTTCTGTTGTTATAGGAGCTAATTAACTGCTCCAACAACCACAAAGAGACTGAAAGAACAGCAATGGAAGCTGCATTATGCAGTGCACTTGCTCTTTCACCCAATCAAGTATTCAATGCAGCAAATCCTGGAGATAAAAATGTTCCTTTGAAATATAGCAAAGATCGGAGTGTTGTAATGACAGTGGCAGCCACTGGAATATTAGGGAAAGGTGGTGGGTTGTTGGAGAGGCCAACCATAGAGACAACATCACCTGGTCGGGAATCTGAATTTGACTTAAGGAAATCGCGGAAAACATCCCCACCTTACCGAGTTTTGCTGCACAATGACAACTTCAACAAGCGAGAATATGTTGTGCAAGTGTTGATGAAGGTGATACCTGGAATGACAATTGATAATGCGGTTAACATCATGCAGGAGGCACATTATAATGGACTAGCAGTGGTGATAGTATGTGCTCAAGTGGATGCTGAAGACCACTGCATGCAGTTAAGAGGAAACGGCCTTCTAAGTTCAATTGAGCCAGCTGATGGTGGTGGTTGTTGATACATAGAGAGACCATTGACATGAGCTTTTGGCCTAATAGTTTCATTGGAGAGGTGACGTATCATATCATATCATACACATTTCAATTTTCACAGTTCCATAATGTGCATGTTTCCAACCACTGAAGATGGTTGTATAGAAAATTATTGACTAGGTAAGGAAAGTGATAGTGCTAGTTAGTTAGTAGTTAGTACTTATACAGGACATAAATTGCTACCAACCGGTAGCATTATTTGGATTTAACGTGTTATACTATCATTAGTCCCTACATTTCCACCTTTTCATTGAAGCAAGCCTCTTTATATTAGCA

Coding sequences of Glyma.09g187300

Limit To All Plant Sequences

>Glyma.09g187300.1 sequence-type=CDS polypeptide=Glyma.09g187300.1.p locus=Glyma.09g187300 ID=Glyma.09g187300.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGCAGTGCACTTGCTCTTTCACCCAATCAAGTATTCAATGCAGCAAATCCTGTTTTGTAATCGCAGGAGATAAAAATGTTCCTTTGAAATATAGCAAAGATCGGAGTGTTGTAATGACAGTGGCAGCCACTGGAATATTAGGGAAAGGTGGTGGGTTGTTGGAGAGGCCAACCATAGAGACAACATCACCTGGTCGGGAATCTGAATTTGACTTAAGGAAATCGCGGAAAACATCCCCACCTTACCGAGTTTTGCTGCACAATGACAACTTCAACAAGCGAGAATATGTTGTGCAAGTGTTGATGAAGGTGATACCTGGAATGACAATTGATAATGCGGTTAACATCATGCAGGAGGCACATTATAATGGACTAGCAGTGGTGATAGTATGTGCTCAAGTGGATGCTGAAGACCACTGCATGCAGTTAAGAGGAAACGGCCTTCTAAGTTCAATTGAGCCAGCTGATGGTGGTGGTTGTTGA

>Glyma.09g187300.2 sequence-type=CDS polypeptide=Glyma.09g187300.2.p locus=Glyma.09g187300 ID=Glyma.09g187300.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGAAGCTGCATTATGCAGTGCACTTGCTCTTTCACCCAATCAAGTATTCAATGCAGCAAATCCTGGAGATAAAAATGTTCCTTTGAAATATAGCAAAGATCGGAGTGTTGTAATGACAGTGGCAGCCACTGGAATATTAGGGAAAGGTGGTGGGTTGTTGGAGAGGCCAACCATAGAGACAACATCACCTGGTCGGGAATCTGAATTTGACTTAAGGAAATCGCGGAAAACATCCCCACCTTACCGAGTTTTGCTGCACAATGACAACTTCAACAAGCGAGAATATGTTGTGCAAGTGTTGATGAAGGTGATACCTGGAATGACAATTGATAATGCGGTTAACATCATGCAGGAGGCACATTATAATGGACTAGCAGTGGTGATAGTATGTGCTCAAGTGGATGCTGAAGACCACTGCATGCAGTTAAGAGGAAACGGCCTTCTAAGTTCAATTGAGCCAGCTGATGGTGGTGGTTGTTGA

>Glyma.09g187300.3 sequence-type=CDS polypeptide=Glyma.09g187300.3.p locus=Glyma.09g187300 ID=Glyma.09g187300.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGAAGCTGCATTATGCAGTGCACTTGCTCTTTCACCCAATCAAGTATTCAATGCAGCAAATCCTGGAGATAAAAATGTTCCTTTGAAATATAGCAAAGATCGGAGTGTTGTAATGACAGTGGCAGCCACTGGAATATTAGGGAAAGGTGGTGGGTTGTTGGAGAGGCCAACCATAGAGACAACATCACCTGGTCGGGAATCTGAATTTGACTTAAGGAAATCGCGGAAAACATCCCCACCTTACCGAGTTTTGCTGCACAATGACAACTTCAACAAGCGAGAATATGTTGTGCAAGTGTTGATGAAGGTGATACCTGGAATGACAATTGATAATGCGGTTAACATCATGCAGGAGGCACATTATAATGGACTAGCAGTGGTGATAGTATGTGCTCAAGTGGATGCTGAAGACCACTGCATGCAGTTAAGAGGAAACGGCCTTCTAAGTTCAATTGAGCCAGCTGATGGTGGTGGTTGTTGA

Predicted protein sequences of Glyma.09g187300

Limit To All Plant Sequences

>Glyma.09g187300.1.p sequence-type=predicted peptide transcript=Glyma.09g187300.1 locus=Glyma.09g187300 ID=Glyma.09g187300.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MQCTCSFTQSSIQCSKSCFVIAGDKNVPLKYSKDRSVVMTVAATGILGKGGGLLERPTIETTSPGRESEFDLRKSRKTSPPYRVLLHNDNFNKREYVVQVLMKVIPGMTIDNAVNIMQEAHYNGLAVVIVCAQVDAEDHCMQLRGNGLLSSIEPADGGGC*

>Glyma.09g187300.2.p sequence-type=predicted peptide transcript=Glyma.09g187300.2 locus=Glyma.09g187300 ID=Glyma.09g187300.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MEAALCSALALSPNQVFNAANPGDKNVPLKYSKDRSVVMTVAATGILGKGGGLLERPTIETTSPGRESEFDLRKSRKTSPPYRVLLHNDNFNKREYVVQVLMKVIPGMTIDNAVNIMQEAHYNGLAVVIVCAQVDAEDHCMQLRGNGLLSSIEPADGGGC*

>Glyma.09g187300.3.p sequence-type=predicted peptide transcript=Glyma.09g187300.3 locus=Glyma.09g187300 ID=Glyma.09g187300.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
MEAALCSALALSPNQVFNAANPGDKNVPLKYSKDRSVVMTVAATGILGKGGGLLERPTIETTSPGRESEFDLRKSRKTSPPYRVLLHNDNFNKREYVVQVLMKVIPGMTIDNAVNIMQEAHYNGLAVVIVCAQVDAEDHCMQLRGNGLLSSIEPADGGGC*

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