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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A previous version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G51690.1 | AT | 1-amino-cyclopropane-1-carboxylate synthase 12 | JGI | N/A | IEA |
| GO:0009058 | GO-bp | biosynthetic process | EnsemblGenomes | N/A | IEA |
| GO:0009058 | GO-bp | biosynthetic process | JGI | N/A | IEA |
| GO:0016020 | GO-cc | membrane | EnsemblGenomes | N/A | IEA |
| GO:0016021 | GO-cc | integral component of membrane | EnsemblGenomes | N/A | IEA |
| GO:0003824 | GO-mf | catalytic activity | EnsemblGenomes | N/A | IEA |
| GO:0030170 | GO-mf | pyridoxal phosphate binding | EnsemblGenomes | N/A | IEA |
| GO:0030170 | GO-mf | pyridoxal phosphate binding | JGI | N/A | IEA |
| KOG0256 | KOG | 1-aminocyclopropane-1-carboxylate synthase, and related proteins | JGI | N/A | IEA |
| PTHR11751 | Panther | SUBGROUP I AMINOTRANSFERASE RELATED | JGI | N/A | IEA |
| PTHR11751:SF26 | Panther | 1-AMINOCYCLOPROPANE-1-CARBOXYLATE SYNTHASE | JGI | N/A | IEA |
| PF00155 | PFAM | Aminotransferase class I and II | JGI | N/A | IEA |
| ETHYL-PWY | SoyCyc9 | ethylene biosynthesis I (plants) | Plant Metabolic Network | ISS | |
| PWY-5048 | SoyCyc9 | rosmarinic acid biosynthesis I | Plant Metabolic Network | ISS | |
| PWY-5071 | SoyCyc9 | superpathway of rosmarinic acid biosynthesis | Plant Metabolic Network | ISS | |
| PWY-5754 | SoyCyc9 | 4-hydroxybenzoate biosynthesis I (eukaryotes) | Plant Metabolic Network | ISS | |
| PWY-5864 | SoyCyc9 | superpathway of plastoquinol biosynthesis | Plant Metabolic Network | ISS | |
| PWY-5886 | SoyCyc9 | 4-hydroxyphenylpyruvate biosynthesis | Plant Metabolic Network | ISS | |
| PWY-7270 | SoyCyc9 | L-methionine salvage cycle II (plants) | Plant Metabolic Network | ISS | |
| GN7V-42854 | SoyCyc9-rxn | aromatic-amino-acid transaminase | Plant Metabolic Network | ISS |
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Glyma.09g152700 not represented in the dataset |
Glyma.09g152700 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.
Gene information in GlycineMine developed by LIS.
Gene families from PhyloGenes.
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma.16g203600 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma09g28000 | Wm82.a1.v1.1 | IGC | As supplied by JGI |
>Glyma.09g152700.1 sequence-type=CDS polypeptide=Glyma.09g152700.1.p locus=Glyma.09g152700 ID=Glyma.09g152700.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGACCCAGTCCCGGAAGCCCAGAAAGCCCAACCCGCAAGCCCGCGAAGCCCAAGAGAGCCCTTCTTCTTCATTCTCCAGCAGCGGCATGAAACTCATCGTCCCCCTCCAGGGCGTGGTGCAGGGCCGCGGAGGGCTTCTCCTCGGGACCCTCGTCCCCTGCACGCTCTTCTACTTCCTCCAGCTCTACCTCAAACGACGCCGTTCCAACTTCTCCCCTCCCTCCCCCTCTTCTTCCGAATCCACCCTCCCCCGCACCTCCTCCCGCTCCAATTTGTCGACGCGTGGCTCCATTTCCCGCGTCCGCGTCTCCAAGCTCGCCACGTCGATTTCCAAACCCGACGAGTCACTCTATTACGTAGGGTTGGAGAGGGTCTCGCGAGATCCCTACGATGCATTGGAGAATCCCAATGGGATTATTCAGTTGGGCTTGTCGGATAACAAGCTGTGCTTGGATTTGATAGGGGAATGGGTGGCGCGGAACTTGGAAGGTTCCATCAGTGGTGGTGTTGGTTTGGGAATCAATGGGATTGTGCCGTATCAGTCGTTTGATGGGGTGATGGAATTGAAAATGGCTTTGTCAGATTTTATGCATCAGGTGATGGGTGGATCCGTGAAATTTGACCCATCTAACATGGTACTAACAGCTGGGGCAACTCCTGCTATTGAGATATTGTCCTTCTGTTTGGCAGACCATGGAAATGCATTCCTTGTCCCTACACCATATTATCCAGGCTTTGACAGAGATGTAAGGTGGCGTCCTGGGGTAGACCTAATACCTGTTCACTGTCGCAGTACTGACAATTTCGATTTAAATATCACTGCTCTTGAACAAGCATTTAGTCAAGCAAGAAAACGAGGAGTCAAAGTTCGTGGAATTCTAATTTCCAACCCTTCAAATCCTGTTGGCAATATGATGACACAAGACATGCTTTACAGTCTTCTAGACTTTGCTGAAGAGAAAAATATTCATATCATTGCTGATGAAGTATTTGCAGGCTCCACATATGGAAGTGAGAAGTTTGTGAGCGTAGCTGAAATTCTTGATTCAGATTATATAGACAAGAGCCGGGTTCATATAATATATGGTCTATCAAAAGACCTCTCGCTTGCTGGCTTTAGAGTGGGGGTTATATGTTCATTCAATGAGAGTGTTTTGGCAGCTGCCAAGAAGTTGAGTAGATTTTCCTCTATATCTGCTCCAACCCAGAGGTTAGTTACTTCAATGCTTTCAGATAAAAGATTTATTCAGGAGTACTTTGAAACCAACCGGAAAAGAATACGACAAATGCATGATGAATTTGTGGGTTGTTTAAGTAAACTAGGAATCAAGTGTGCCAAGAGCAGTGCTGGTATGTACTGTTGGGTTGATATGAGTGGATTAATCCGACCTTATAGTGAGAAAGGAGAAATTGAATTATGGGAGAAGTTTTTGAGTGTTGCCAAGATCAATATAACTCCTGGGTCAGCCTGTCATTGCATAGAACCAGGATGGTTTCGGATTTGTTTTACCACTATAACATTAGAGGAGATCCCTATGGTTATTGATCGAATTAGGAGAGTTGTTGAAAGTTGTAATTTTTCTAGTTGA
>Glyma.09g152700.1.p sequence-type=predicted peptide transcript=Glyma.09g152700.1 locus=Glyma.09g152700 ID=Glyma.09g152700.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 MTQSRKPRKPNPQAREAQESPSSSFSSSGMKLIVPLQGVVQGRGGLLLGTLVPCTLFYFLQLYLKRRRSNFSPPSPSSSESTLPRTSSRSNLSTRGSISRVRVSKLATSISKPDESLYYVGLERVSRDPYDALENPNGIIQLGLSDNKLCLDLIGEWVARNLEGSISGGVGLGINGIVPYQSFDGVMELKMALSDFMHQVMGGSVKFDPSNMVLTAGATPAIEILSFCLADHGNAFLVPTPYYPGFDRDVRWRPGVDLIPVHCRSTDNFDLNITALEQAFSQARKRGVKVRGILISNPSNPVGNMMTQDMLYSLLDFAEEKNIHIIADEVFAGSTYGSEKFVSVAEILDSDYIDKSRVHIIYGLSKDLSLAGFRVGVICSFNESVLAAAKKLSRFSSISAPTQRLVTSMLSDKRFIQEYFETNRKRIRQMHDEFVGCLSKLGIKCAKSSAGMYCWVDMSGLIRPYSEKGEIELWEKFLSVAKINITPGSACHCIEPGWFRICFTTITLEEIPMVIDRIRRVVESCNFSS*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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