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Report for Sequence Feature Glyma.09g149900

Feature Type:gene_model
Chromosome:Gm09
Start:37041858
stop:37043732
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.09g149900
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G25410.1AT basic helix-loop-helix (bHLH) DNA-binding superfamily protein JGI N/AIEA
GO:0006357GO-bp regulation of transcription by RNA polymerase II EnsemblGenomesN/AIEA
GO:0090575GO-cc RNA polymerase II transcription factor complex EnsemblGenomesN/AIEA
GO:0000977GO-mf RNA polymerase II regulatory region sequence-specific DNA binding EnsemblGenomesN/AIEA
GO:0003677GO-mf DNA binding EnsemblGenomesN/AIEA
GO:0003700GO-mf DNA binding transcription factor activity EnsemblGenomesN/AIEA
GO:0046983GO-mf protein dimerization activity EnsemblGenomesN/AIEA
GO:0046983GO-mf protein dimerization activity JGI N/AIEA
PF00010PFAM Helix-loop-helix DNA-binding domain JGI N/AIEA

Expression Patterns of Glyma.09g149900
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.09g149900
ParalogEvidenceComments
Glyma.16g201300 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.09g149900 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma09g27610 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.09g149900
>Glyma.09g149900.2 sequence-type=transcript locus=Glyma.09g149900 ID=Glyma.09g149900.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATTTCAGAATCTTAGCATATCAGGTCAATGGAAAGTAGTCCTCAAACCCTAACAACCAAATACACTTGATTTTCTTGCTTTGGTATCTTTTGCCACCCCCCAAAAAGATAGCATTCACAATGATGAATCCTCTCCACCCCAATGAAAGGGCAAGGAAAGAGTAGCAAGCACTTGCATGTTGAGGAGAAAGAAGACTTTATTGCCATGGATGAGAACAAGAAGTGGATGCATAAAGAAACTGAAAGACAAAGAAGGCAAGAGATGGGAAAACTCTGCGCCACCCTTAGATCGCTTCTGCCTTTAGAATATATTAAGGGAAAACGCTCAACCTCTGATTATGTGAATGAGGCTATGAATTATATCAACCACCTACAAAATAAGGTGAAGCAATTGCAAGCAAAGAGGGATGAGTTAGTGAAGGTGTCTAATTTGAAGAGTAATATTTGTTCTGAGAATGAAAGCTCTAGCAGTAGCACTACTCATCTTCCACCCTTGGTTTCTGTTCATCCTTTCCCGGGAGGACTTGAGATTATGTGCGGTTACAGCTTCGGGAAAAGTGTGTTTCCCATGTCAAGAGTGTTGGACATTCTGCTTAAAGAAGGGATTAATGTGGTTAGCACTACTTCAATCAGAAGAGATGGAAGATTCATACACACTATACGATCAGAGGATCCAAATCATTTGAATATGACTGGCGCTGATTACTCCGAATTGCAAATAAAGCTAACGGAGGCAATAAGTTTGCAAGAGACTTTGCCTGAACATGAAAATTGAAATCTTGGGAAGATATATTATTTGGAGATGTTTCTGATCGTATATACTATTAACTTGAGTGATTTGTACAGCGGTGTACTTGTTATTTATCTGGTATAATTGTTGGTGAAGTACAAAGGGTAGCTAGTTGATTATTCCATTCGCGCAATACTCCACGAGCACGAGGTCATTTTTATCTATTTTCATGCCAGTTAGATCAAACTCATGGATAATATTCATGGTACTGTTCAATGTTTTGTGTGCACGCTTCTGCATTTAGTTCTTACAGTAGTTGTTTTTCAATAGTCGCATCATAAAATTTGAATTTCCTGTTGTATATACACTGGCATTACTTACTTTCGCATCATGATAACCATCAAGAATTACAATGTTGTTCATCCATTATCGTTTCTTCCTCGTCAATTGCTGTAATAATTGTACCTTTGGTTCTGATACTTATGACAAAATTTGAATTAGGGAAACACAGACGTTTGTCCATTCTTTCTTGTGGTTTTCAGTTTTTCATCTTGGTACATTTCCACACGCTGTCTTTTAGTCAAACTTTGGTGTCTTATGTTGGAGATCTCACCTTGAGTAGAAATGG

>Glyma.09g149900.3 sequence-type=transcript locus=Glyma.09g149900 ID=Glyma.09g149900.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
GCTGATTATTCTCTCCCCTACCTTAATTAAGATCATCAGATCTTGTATGATCCTCTGATGCTGATGCAGTGATCTTTGTACAAGTGAAAGGGCAAGGAAAGAGTAGCAAGCACTTGCATGTTGAGGAGAAAGAAGACTTTATTGCCATGGATGAGAACAAGAAGTGGATGCATAAAGAAACTGAAAGACAAAGAAGGCAAGAGATGGGAAAACTCTGCGCCACCCTTAGATCGCTTCTGCCTTTAGAATATATTAAGGGAAAACGCTCAACCTCTGATTATGTGAATGAGGCTATGAATTATATCAACCACCTACAAAATAAGGTGAAGCAATTGCAAGCAAAGAGGGATGAGTTAGTGAAGGTGTCTAATTTGAAGAGTAATATTTGTTCTGAGAATGAAAGCTCTAGCAGTAGCACTACTCATCTTCCACCCTTGGTTTCTGTTCATCCTTTCCCGGGAGGACTTGAGATTATGTGCGGTTACAGCTTCGGGAAAAGTGTGTTTCCCATGTCAAGAGTGTTGGACATTCTGCTTAAAGAAGGGATTAATGTGGTTAGCACTACTTCAATCAGAAGAGATGGAAGATTCATACACACTATACGATCAGAGGATCCAAATCATTTGAATATGACTGGCGCTGATTACTCCGAATTGCAAATAAAGCTAACGGAGGCAATAAGTTTGCAAGAGACTTTGCCTGAACATGAAAATTGAAATCTTGGGAAGATATATTATTTGGAGATGTTTCTGATCGTATATACTATTAACTTGAGTGATTTGTACAGCGGTGTACTTGTTATTTATCTGGTATAATTGTTGGTGAAGTACAAAGGGTAGCTAGTTGATTATTCCATTCGCGCAATACTCCACGAGCACGAGGTCATTTTTATCTATTTTCATGCCAGTTAGATCAAACTCATGGATAATATTCATGGTACTGTTCAATGTTTTGTGTGCACGCTTCTGCATTTAGTTCTTACAGTAGTTGTTTTTCAATAGTCGCATCATAAAATTTGAATTTCCTGTTGTATATACACTGGCATTACTTACTTTCGCATCATGATAACCATCAAGAATTACAATGTTGTTCATCCATTATCGTTTCTTCCTCGTCAATTGCTGTAATAATTGTACCTTTGGTTCTGATACTTATGACAAAATTTGAATTAGGGAAACACAGACGTTTGTCCATTC
Coding sequences of Glyma.09g149900
>Glyma.09g149900.1 sequence-type=CDS polypeptide=Glyma.09g149900.1.p locus=Glyma.09g149900 ID=Glyma.09g149900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGATCTTTGTACAAGTGAAAGGGCAAGGAAAGAGTAGCAAGCACTTGCATGTTGAGGAGAAAGAAGACTTTATTGCCATGGATGAGAACAAGAAGTGGATGCATAAAGAAACTGAAAGACAAAGAAGGCAAGAGATGGGAAAACTCTGCGCCACCCTTAGATCGCTTCTGCCTTTAGAATATATTAAGGGAAAACGCTCAACCTCTGATTATGTGAATGAGGCTATGAATTATATCAACCACCTACAAAATAAGGTGAAGCAATTGCAAGCAAAGAGGGATGAGTTAGTGAAGGTGTCTAATTTGAAGAGTAATATTTGTTCTGAGAATGAAAGCTCTAGCAGTAGCACTACTCATCTTCCACCCTTGGTTTCTGTTCATCCTTTCCCGGGAGGACTTGAGATTATGTGCGGTTACAGCTTCGGGAAAAGTGTGTTTCCCATGTCAAGAGTGTTGGACATTCTGCTTAAAGAAGGGATTAATGTGGTTAGCACTACTTCAATCAGAAGAGATGGAAGATTCATACACACTATACGATCAGAGGATCCAAATCATTTGAATATGACTGGCGCTGATTACTCCGAATTGCAAATAAAGCTAACGGAGGCAATAAGTTTGCAAGAGACTTTGCCTGAACATGAAAATTGA

>Glyma.09g149900.2 sequence-type=CDS polypeptide=Glyma.09g149900.2.p locus=Glyma.09g149900 ID=Glyma.09g149900.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGAAAGGGCAAGGAAAGAGTAGCAAGCACTTGCATGTTGAGGAGAAAGAAGACTTTATTGCCATGGATGAGAACAAGAAGTGGATGCATAAAGAAACTGAAAGACAAAGAAGGCAAGAGATGGGAAAACTCTGCGCCACCCTTAGATCGCTTCTGCCTTTAGAATATATTAAGGGAAAACGCTCAACCTCTGATTATGTGAATGAGGCTATGAATTATATCAACCACCTACAAAATAAGGTGAAGCAATTGCAAGCAAAGAGGGATGAGTTAGTGAAGGTGTCTAATTTGAAGAGTAATATTTGTTCTGAGAATGAAAGCTCTAGCAGTAGCACTACTCATCTTCCACCCTTGGTTTCTGTTCATCCTTTCCCGGGAGGACTTGAGATTATGTGCGGTTACAGCTTCGGGAAAAGTGTGTTTCCCATGTCAAGAGTGTTGGACATTCTGCTTAAAGAAGGGATTAATGTGGTTAGCACTACTTCAATCAGAAGAGATGGAAGATTCATACACACTATACGATCAGAGGATCCAAATCATTTGAATATGACTGGCGCTGATTACTCCGAATTGCAAATAAAGCTAACGGAGGCAATAAGTTTGCAAGAGACTTTGCCTGAACATGAAAATTGA

>Glyma.09g149900.3 sequence-type=CDS polypeptide=Glyma.09g149900.3.p locus=Glyma.09g149900 ID=Glyma.09g149900.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGATGAGAACAAGAAGTGGATGCATAAAGAAACTGAAAGACAAAGAAGGCAAGAGATGGGAAAACTCTGCGCCACCCTTAGATCGCTTCTGCCTTTAGAATATATTAAGGGAAAACGCTCAACCTCTGATTATGTGAATGAGGCTATGAATTATATCAACCACCTACAAAATAAGGTGAAGCAATTGCAAGCAAAGAGGGATGAGTTAGTGAAGGTGTCTAATTTGAAGAGTAATATTTGTTCTGAGAATGAAAGCTCTAGCAGTAGCACTACTCATCTTCCACCCTTGGTTTCTGTTCATCCTTTCCCGGGAGGACTTGAGATTATGTGCGGTTACAGCTTCGGGAAAAGTGTGTTTCCCATGTCAAGAGTGTTGGACATTCTGCTTAAAGAAGGGATTAATGTGGTTAGCACTACTTCAATCAGAAGAGATGGAAGATTCATACACACTATACGATCAGAGGATCCAAATCATTTGAATATGACTGGCGCTGATTACTCCGAATTGCAAATAAAGCTAACGGAGGCAATAAGTTTGCAAGAGACTTTGCCTGAACATGAAAATTGA
Predicted protein sequences of Glyma.09g149900
>Glyma.09g149900.1.p sequence-type=predicted peptide transcript=Glyma.09g149900.1 locus=Glyma.09g149900 ID=Glyma.09g149900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MIFVQVKGQGKSSKHLHVEEKEDFIAMDENKKWMHKETERQRRQEMGKLCATLRSLLPLEYIKGKRSTSDYVNEAMNYINHLQNKVKQLQAKRDELVKVSNLKSNICSENESSSSSTTHLPPLVSVHPFPGGLEIMCGYSFGKSVFPMSRVLDILLKEGINVVSTTSIRRDGRFIHTIRSEDPNHLNMTGADYSELQIKLTEAISLQETLPEHEN*

>Glyma.09g149900.2.p sequence-type=predicted peptide transcript=Glyma.09g149900.2 locus=Glyma.09g149900 ID=Glyma.09g149900.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MKGQGKSSKHLHVEEKEDFIAMDENKKWMHKETERQRRQEMGKLCATLRSLLPLEYIKGKRSTSDYVNEAMNYINHLQNKVKQLQAKRDELVKVSNLKSNICSENESSSSSTTHLPPLVSVHPFPGGLEIMCGYSFGKSVFPMSRVLDILLKEGINVVSTTSIRRDGRFIHTIRSEDPNHLNMTGADYSELQIKLTEAISLQETLPEHEN*

>Glyma.09g149900.3.p sequence-type=predicted peptide transcript=Glyma.09g149900.3 locus=Glyma.09g149900 ID=Glyma.09g149900.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
MDENKKWMHKETERQRRQEMGKLCATLRSLLPLEYIKGKRSTSDYVNEAMNYINHLQNKVKQLQAKRDELVKVSNLKSNICSENESSSSSTTHLPPLVSVHPFPGGLEIMCGYSFGKSVFPMSRVLDILLKEGINVVSTTSIRRDGRFIHTIRSEDPNHLNMTGADYSELQIKLTEAISLQETLPEHEN*






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