Glyma.09g142900

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma.09g142900

Feature Type:	gene_model
Chromosome:	Gm09
Start:	35513123
stop:	35515618
Source:	JGI
Version:	Wm82.a2.v1
High confidence:	yes

A previous version of this gene model can be found here:

Annotations for Glyma.09g142900

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G48270.1	AT	cytochrome P450, family 71, subfamily A, polypeptide 26	JGI	N/A	IEA
GO:0044550	GO-bp	secondary metabolite biosynthetic process	EnsemblGenomes	N/A	IEA
GO:0055114	GO-bp	oxidation-reduction process	EnsemblGenomes	N/A	IEA
GO:0055114	GO-bp	oxidation-reduction process	JGI	N/A	IEA
GO:0016020	GO-cc	membrane	EnsemblGenomes	N/A	IEA
GO:0016021	GO-cc	integral component of membrane	EnsemblGenomes	N/A	IEA
GO:0004497	GO-mf	monooxygenase activity	EnsemblGenomes	N/A	IEA
GO:0005506	GO-mf	iron ion binding	EnsemblGenomes	N/A	IEA
GO:0005506	GO-mf	iron ion binding	JGI	N/A	IEA
GO:0009055	GO-mf	electron carrier activity	JGI	N/A	IEA
GO:0016491	GO-mf	oxidoreductase activity	EnsemblGenomes	N/A	IEA
GO:0016705	GO-mf	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	EnsemblGenomes	N/A	IEA
GO:0016705	GO-mf	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	JGI	N/A	IEA
GO:0016709	GO-mf	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen	EnsemblGenomes	N/A	IEA
GO:0020037	GO-mf	heme binding	EnsemblGenomes	N/A	IEA
GO:0020037	GO-mf	heme binding	JGI	N/A	IEA
GO:0046872	GO-mf	metal ion binding	EnsemblGenomes	N/A	IEA
KOG0156	KOG	Cytochrome P450 CYP2 subfamily	JGI	N/A	IEA
PTHR24298	Panther	FAMILY NOT NAMED	JGI	N/A	IEA
PTHR24298:SF44	Panther		JGI	N/A	IEA
PF00067	PFAM	Cytochrome P450	JGI	N/A	IEA
PWY-7497	SoyCyc9	3β-hydroxysesquiterpene lactone biosynthesis	Plant Metabolic Network		ISS
GN7V-62020	SoyCyc9-rxn	parthenolide 3-hydroxylase	Plant Metabolic Network		ISS

Expression Patterns of Glyma.09g142900

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.

Gene information in GlycineMine developed by LIS.

Related Plant Genes

Gene families from PhyloGenes.

Paralogs of Glyma.09g142900

Paralog	Evidence	Comments
Glyma.16g195600	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.09g142900 Gene Call Version Wm82.a2.v1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma09g26430	Wm82.a1.v1.1	IGC	As supplied by JGI

Coding sequences of Glyma.09g142900

Limit To All Plant Sequences

>Glyma.09g142900.1 sequence-type=CDS polypeptide=Glyma.09g142900.1.p locus=Glyma.09g142900 ID=Glyma.09g142900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGTCGAATTTTCTGAATGCAACATCCTCCTTCTGGTTCTTCCTATCTATGCTATCATTGTTCATCTTCCTAGCCTTTCCCACCATATTCAATCTCTTATCAAAGCTGAATTATTCCAAATCAGCAAAAAACTCACCCCCATCTCCTCCAAAACTCCCAATCCTAGGAAACCTCCATCAACTTGGCATGTCACATCACCGCACACTCCAATCTCTAGCTCAGTCCTATGGCCCTTTAATGCTACTTCACTTCGGGAAGGTACCGGTTCTCGTGGTCTCAACCGCCGAAGCGGCGCGTGAGGTTCTGAAAACCCAGGACCACGTTTTCTGCAACAGACCACATCGTAAGATGTTTGACATCTTCTGGTATGGTTCCAGAGACGTAGCATCTGCTCCATATGGCCACTACTGGAGGCAGGTGAAGAGTATCTGCGTCTTGCATCTTCTGAGTGCCAAAAAGGTTCTATCTTTTCGTAGAGTGAGGGAAGAGGAAGTTGTTTTATTGATAGGGAAAGTTAAAAAGAGTTTTTGTTCTGATTTCATAATGCCAGTGAACTTAACTGATTTGTTTTCTGATGTTACTAATGATATAGTGTGTAGGTGTGTTATTGGGAGGAGGTATGAGGGGAGTGAGCTTAGAGGGCCAATGAGCGAGTTGGAAGAGTTGTTGGGGGCTTCGGTTTTGGGAGACTATATACCTTGGCTTGATTGGTTGGGGAGAGTTAATGGGGTGTATGGTAAGGCAGAGAGAGCGGCTAAAAAACTTGATGAGTTTTTGGATGAAGTTGTTGATGAGCATGTTTGTAAGAGAGACCATGATGATGGTTGTGGTGATGATGATGTTGATGGTTATGGCCAGAATGATTTTGTGGACATCTTGCTGTCGATTCAGAAAACAAGCAGCACCACCGATTTCCAGGTTGATAGGACAATCATGAAGGCTTTGATCATGGATATGTTTGGTGCAGGAACTGATACCACTCTTGCAGTCCTAGAGTGGGCTATGACAGAACTATTGAGGCACCCAAATGTGATGCAGAAACTACAAGACGAGGTAAGAAGTGTGGCTGGGGGCAGGACTCACATAACTGAGGAGGATTTGAATGTCATGCGTTACTTGAAAGCAGTCATTAAAGAAATTCTTAGATTGCACCCTCCATCTCCCATATTGATTCCAAGGGAATCCATGCAAGATACGAAATTGATGGGCTATGACATTGCAATTGGCACACAAGTAATAGTTAACAATTGGGCAATTTCAACAGACCCTTTGTACTGGGACCAACCACTAGAATTTCAACCAGAGAGATTCTTGAAGAGTTCAATAGATGTCAAAGGACATGATTTTGAATTGATCCCATTTGGAGCTGGAAGGAGGGGTTGCCCAGGAATAGGGTTTACCATGGTTGTGAATGAGTTGGTCCTTGCAAATATTGTGCACCAATTTGATTGGACTGTGCCTGGTGGAGTGGTGGGGGATCACACATTGGATATGTCTGAAACTACTGGATTGACTGTTCACAAAAGGTTGCCTCTTGTGGCACTTGCATCACTTCATATGTGA

Predicted protein sequences of Glyma.09g142900

Limit To All Plant Sequences

>Glyma.09g142900.1.p sequence-type=predicted peptide transcript=Glyma.09g142900.1 locus=Glyma.09g142900 ID=Glyma.09g142900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MSNFLNATSSFWFFLSMLSLFIFLAFPTIFNLLSKLNYSKSAKNSPPSPPKLPILGNLHQLGMSHHRTLQSLAQSYGPLMLLHFGKVPVLVVSTAEAAREVLKTQDHVFCNRPHRKMFDIFWYGSRDVASAPYGHYWRQVKSICVLHLLSAKKVLSFRRVREEEVVLLIGKVKKSFCSDFIMPVNLTDLFSDVTNDIVCRCVIGRRYEGSELRGPMSELEELLGASVLGDYIPWLDWLGRVNGVYGKAERAAKKLDEFLDEVVDEHVCKRDHDDGCGDDDVDGYGQNDFVDILLSIQKTSSTTDFQVDRTIMKALIMDMFGAGTDTTLAVLEWAMTELLRHPNVMQKLQDEVRSVAGGRTHITEEDLNVMRYLKAVIKEILRLHPPSPILIPRESMQDTKLMGYDIAIGTQVIVNNWAISTDPLYWDQPLEFQPERFLKSSIDVKGHDFELIPFGAGRRGCPGIGFTMVVNELVLANIVHQFDWTVPGGVVGDHTLDMSETTGLTVHKRLPLVALASLHM*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain