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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A previous version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G52520.1 | AT | Class II aaRS and biotin synthetases superfamily protein | JGI | N/A | IEA |
| GO:0006418 | GO-bp | tRNA aminoacylation for protein translation | EnsemblGenomes | N/A | IEA |
| GO:0006418 | GO-bp | tRNA aminoacylation for protein translation | JGI | N/A | IEA |
| GO:0006433 | GO-bp | prolyl-tRNA aminoacylation | EnsemblGenomes | N/A | IEA |
| GO:0006433 | GO-bp | prolyl-tRNA aminoacylation | JGI | N/A | IEA |
| GO:0005737 | GO-cc | cytoplasm | EnsemblGenomes | N/A | IEA |
| GO:0005737 | GO-cc | cytoplasm | JGI | N/A | IEA |
| GO:0017101 | GO-cc | aminoacyl-tRNA synthetase multienzyme complex | EnsemblGenomes | N/A | IEA |
| GO:0000166 | GO-mf | nucleotide binding | EnsemblGenomes | N/A | IEA |
| GO:0000166 | GO-mf | nucleotide binding | JGI | N/A | IEA |
| GO:0004812 | GO-mf | aminoacyl-tRNA ligase activity | EnsemblGenomes | N/A | IEA |
| GO:0004812 | GO-mf | aminoacyl-tRNA ligase activity | JGI | N/A | IEA |
| GO:0004827 | GO-mf | proline-tRNA ligase activity | EnsemblGenomes | N/A | IEA |
| GO:0004827 | GO-mf | proline-tRNA ligase activity | JGI | N/A | IEA |
| GO:0005524 | GO-mf | ATP binding | EnsemblGenomes | N/A | IEA |
| GO:0005524 | GO-mf | ATP binding | JGI | N/A | IEA |
| KOG4163 | KOG | Prolyl-tRNA synthetase | JGI | N/A | IEA |
| PTHR11451 | Panther | TRNA SYNTHETASE-RELATED | JGI | N/A | IEA |
| PTHR11451:SF6 | Panther | SUBFAMILY NOT NAMED | JGI | N/A | IEA |
| PF00587 | PFAM | tRNA synthetase class II core domain (G, H, P, S and T) | JGI | N/A | IEA |
| PF03129 | PFAM | Anticodon binding domain | JGI | N/A | IEA |
| PF09180 | PFAM | Prolyl-tRNA synthetase, C-terminal | JGI | N/A | IEA |
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Glyma.09g133200 not represented in the dataset |
Glyma.09g133200 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.
Gene information in GlycineMine developed by LIS.
Gene families from PhyloGenes.
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma.16g179800 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma09g24670 | Wm82.a1.v1.1 | IGC | As supplied by JGI |
>Glyma.09g133200.1 sequence-type=CDS polypeptide=Glyma.09g133200.1.p locus=Glyma.09g133200 ID=Glyma.09g133200.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGTTGTCTCTCAGGCTAACCTCGTTCACCCACCTCTTCTCCCCGCCCTCTTCCGCCGTCATCTCTCGCCGGTCCACGGCGTTTCTGCGGCGGCGCCACCACCCCCATCCACGGCCACTCTCCGCCTCGTTCTCCGCCCAGAGCGCGGCGGCGGAGACCCAGGACCGAGTCGAGAACTCGAAGAACCGAGTCACCGAACGAGTCATCACGCCAAGGTCACAGGACTTCAACGCGTGGTACCTCGATATCATAGCCAATGCCGAGTTGGCCGATTACGGTCCGGTTCGCGGCACCATGGTCATTCGTCCCTACGGTTACGCCATTTGGGAAGCCATTCAGGAGTATTTGAATGTGAAGTTCAAGGAGACTGGACATAGTAACATGTATTTTCCGCAGTTTATCCCATACTCATTTATAGAGAAAGAAGCAAGTCATGTTGAGGGTTTTAGTCCTGAGTTAGCACTAGTGACAATTGGAGGTGGAAAGGAACTTGAAGAGAAGCTCGTGGTCCGGCCAACTAGTGAAACCATTGTGAATCATATGTTTACTCAATGGATCCATAGCTACCGTGATCTTCCTCTCATGATTAATCAGTGGGCAAACGTGACAAGATGGGAGATGCGCACCAAACCATTTGTGAGAACTCTTGAATTTCTTTGGCAAGAAGGACATACTGCTCATGCAACTCCAGAGGAGGCCGAAAAAGAGGCTATACAGATGATTGACATCTATACCAGATTTGCTTATGAGCAAGCTGCAATACCTGTTGTTACAGGTCGAAAATCTAAAGTGGAAACATTTGCTGGTGCTTGTAAGACCTATACAATTGAGGCTATGATGGGTGACAAGAAAGCATTACAAGCAGGAACCAGTCATAACCTTGGGCAAAACTTTGCCCGTGCCTTTGGAACACAGTTCACAGACGAAAATGGGTTAAGGGAATATGTTTGGCAGACATCATGGGCAATTAGTACACGTTTTGTTGGTGGCATCATCATGACACATGGAGATGATGCAGGCCTAATGCTTCCCCCAAAGCTTGCACCGATACAGGTGGTAATTGTACCCATTTGGAAGAAGGATGGTGAAAAGGAGGCAGTTCTAAATGCCGCATCATCTGTAAAAGATGTTCTTCAAAGATCTGGGATTAAAGTTAAACTTGACGACTCAGATCAAAGAACCCCTGGATGGAAATTCAATTTCTGGGAAATGAAGGGAGTTCCTCTTAGAATTGAAATTGGTCCTCGTGATGTGGCTAGTGGAAGTGTGGTGATATCCAGGAGAGATATCCCTGGGAAGCAAGGGAAAGTGTTTGGAATCTCTATGGAGCCTTCAAATTTGGAGGCTTATGTTAAAGACAAGTTGGATGAGATACAGTCATCTCTTTTGGAAAGGGCAATTGCTTTTCGAGACAGTAATATTGTAGATGTGAACACATATGATGATCTTAAAGCTGCAATATCACAAGGCAAATGGGCAAGGGGCCCTTGGTCTGCAAGTGATGAAGATGAGTTAAAAGTAAAGGAGGAGACTGGAGCAACTATTAGGTGTTTTCCTTTCGAACAGCCACAAGGGGTTAAAACATGCTTGATGACCGGCAATCCTGCTGAAGAAGTGGCTATTTTTTCCAAATCATACTAA
>Glyma.09g133200.1.p sequence-type=predicted peptide transcript=Glyma.09g133200.1 locus=Glyma.09g133200 ID=Glyma.09g133200.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 MLSLRLTSFTHLFSPPSSAVISRRSTAFLRRRHHPHPRPLSASFSAQSAAAETQDRVENSKNRVTERVITPRSQDFNAWYLDIIANAELADYGPVRGTMVIRPYGYAIWEAIQEYLNVKFKETGHSNMYFPQFIPYSFIEKEASHVEGFSPELALVTIGGGKELEEKLVVRPTSETIVNHMFTQWIHSYRDLPLMINQWANVTRWEMRTKPFVRTLEFLWQEGHTAHATPEEAEKEAIQMIDIYTRFAYEQAAIPVVTGRKSKVETFAGACKTYTIEAMMGDKKALQAGTSHNLGQNFARAFGTQFTDENGLREYVWQTSWAISTRFVGGIIMTHGDDAGLMLPPKLAPIQVVIVPIWKKDGEKEAVLNAASSVKDVLQRSGIKVKLDDSDQRTPGWKFNFWEMKGVPLRIEIGPRDVASGSVVISRRDIPGKQGKVFGISMEPSNLEAYVKDKLDEIQSSLLERAIAFRDSNIVDVNTYDDLKAAISQGKWARGPWSASDEDELKVKEETGATIRCFPFEQPQGVKTCLMTGNPAEEVAIFSKSY*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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