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Report for Sequence Feature Glyma.09g128800

Feature Type:gene_model
Chromosome:Gm09
Start:32182557
stop:32186778
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.09g128800
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G11260.1AT phosphatase-related JGI N/AIEA
GO:0005515GO-mf protein binding EnsemblGenomesN/AIEA
GO:0005515GO-mf protein binding JGI N/AIEA
KOG1309 KOG Suppressor of G2 allele of skp1 JGI N/AIEA
PTHR22904Panther TPR REPEAT CONTAINING PROTEIN JGI N/AIEA
PTHR22904:SF69Panther JGI N/AIEA
PF00515PFAM Tetratricopeptide repeat JGI N/AIEA
PF04969PFAM CS domain JGI N/AIEA
PF05002PFAM SGS domain JGI N/AIEA

Proteins Associated with Glyma.09g128800
LocusGene SymbolProtein Name
SGT1-2 Suppressor of the G2 allele of SKP1 gene 2

Expression Patterns of Glyma.09g128800
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.09g128800 not represented in the dataset
Glyma.09g128800 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.09g128800
ParalogEvidenceComments
Glyma.16g176200 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.09g128800 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma09g23980 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.09g128800
>Glyma.09g128800.1 sequence-type=CDS polypeptide=Glyma.09g128800.1.p locus=Glyma.09g128800 ID=Glyma.09g128800.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCTTCCGATCTCGAAGCAAAAGCCAAAGAGGCCTTCGTCGAAGACCACTTCGAACTCGCCGTGGACCTTCTCTCTCAGGCCATTCATCTCGAACCCAACAAAGCCGAATTCTACGCCGACCGCGCCCAAGCCAACATCAAACTCAACAACTTCACTGAGGCTGTGGCTGATGCTAACAAAGCAATTGAATTGAATCCTTCTCTACCAAAAGCATATTTGCGGAAAGGTACTGCTTGCATGAAGCTTGAGGAATATGAAACTGCAAAGGCTGCTCTGGAGGTGGGTGCATCATTGTCTCCAGACAACTCAAGGTTTGCTACTTTGATCAAAGAATGTGATAAGCTCATTGCAGAAGAATCTTATACCCCACCTATTATAGAGGAAAAGGCCACAACAGAAGATGTTACTCCAAAAGATGTTCAGCAACAAGATGATCTTCTAGAGAAGCCAACAGTTACAGTGACTAAACCTAAATATAGGCATGAATTCTACCAGAAACATGATCAGGTGGTTGTGACCATATTTGCAAAGAAAATCCCAAAGGAAAGCATTACTGTTGACTTCGGTGAACAAATACTAAGTGTTAGTATTAATGTCACAGGAGAAGACACATATGTTTTTCAACCTCGCTTATTTGGAAAGATCATACCTTCCAATTGTCAATATGAAGTTTTGTCCACCAAAATTGAAATTCGTCTTGCAAAAGCAGAACCTATTCACTGGACATCTCTAGAATTCACCAGAGACATCGTTGTTCAACAGAGGGTTAATGCTTCTTCAGTTACTGGAAGTCAAAGACCTTCTTACCCATCCTCAAAACAAACAAGAGATTGGGACAAGATTGAAGCTCAAGTCAAGAAAGAGGAGAAAGATGAAAAGCTTGATGGCGATGCTGCATTGAACAAATTTTTCCGCGAAATATATCAAGATGCAGATGAGGATACAAGAAGAGCAATGAAAAAGTCATTTGTTGAGTCTAATGGGACAGTTCTGTCTACAAACTGGAAAGAAGTGGGAACAAAGAAGGTAGAGGGAAGTCCTCCTGATGGCATGGAGTTGAAGAAATGGGAATATTAA
Predicted protein sequences of Glyma.09g128800
>Glyma.09g128800.1.p sequence-type=predicted peptide transcript=Glyma.09g128800.1 locus=Glyma.09g128800 ID=Glyma.09g128800.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MASDLEAKAKEAFVEDHFELAVDLLSQAIHLEPNKAEFYADRAQANIKLNNFTEAVADANKAIELNPSLPKAYLRKGTACMKLEEYETAKAALEVGASLSPDNSRFATLIKECDKLIAEESYTPPIIEEKATTEDVTPKDVQQQDDLLEKPTVTVTKPKYRHEFYQKHDQVVVTIFAKKIPKESITVDFGEQILSVSINVTGEDTYVFQPRLFGKIIPSNCQYEVLSTKIEIRLAKAEPIHWTSLEFTRDIVVQQRVNASSVTGSQRPSYPSSKQTRDWDKIEAQVKKEEKDEKLDGDAALNKFFREIYQDADEDTRRAMKKSFVESNGTVLSTNWKEVGTKKVEGSPPDGMELKKWEY*






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