Glyma.09g108800

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Report for Sequence Feature Glyma.09g108800

Feature Type:	gene_model
Chromosome:	Gm09
Start:	21134666
stop:	21138072
Source:	JGI
Version:	Wm82.a2.v1
High confidence:	yes

A previous version of this gene model can be found here:

Annotations for Glyma.09g108800

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G09060.1	AT	Zinc finger, RING-type;Transcription factor jumonji/aspartyl beta-hydroxylase	JGI	N/A	IEA
AT1G09060.3	AT	Zinc finger, RING-type;Transcription factor jumonji/aspartyl beta-hydroxylase	JGI	N/A	IEA
GO:0006355	GO-bp	regulation of transcription, DNA-templated	EnsemblGenomes	N/A	IEA
GO:0033169	GO-bp	histone H3-K9 demethylation	EnsemblGenomes	N/A	IEA
GO:0000785	GO-cc	chromatin	EnsemblGenomes	N/A	IEA
GO:0005634	GO-cc	nucleus	EnsemblGenomes	N/A	IEA
GO:0000976	GO-mf	transcription regulatory region sequence-specific DNA binding	EnsemblGenomes	N/A	IEA
GO:0031490	GO-mf	chromatin DNA binding	EnsemblGenomes	N/A	IEA
GO:0032454	GO-mf	histone demethylase activity (H3-K9 specific)	EnsemblGenomes	N/A	IEA
PTHR12549	Panther	JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN	JGI	N/A	IEA
PTHR12549:SF1	Panther		JGI	N/A	IEA
PWY-6352	SoyCyc9	3-phosphoinositide biosynthesis	Plant Metabolic Network		ISS
GN7V-64718	SoyCyc9-rxn	Enzyme name not determined	Plant Metabolic Network		ISS

Expression Patterns of Glyma.09g108800

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.09g108800 not represented in the dataset	Glyma.09g108800 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.

Gene information in GlycineMine developed by LIS.

Related Plant Genes

Gene families from PhyloGenes.

Gene model name correspondences to Glyma.09g108800 Gene Call Version Wm82.a2.v1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma09g16592	Wm82.a1.v1.1	IGC	As supplied by JGI

Transcripts of Glyma.09g108800

Limit To All Plant Sequences

>Glyma.09g108800.2 sequence-type=transcript locus=Glyma.09g108800 ID=Glyma.09g108800.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGAACTGGGTTGCAAAGTTGGTAAAAAATGTAGAGGAAATGGTTAGTGGCTGCAGAATTAGTAATGTTGATGGTCCACTGGAAACTGGGCTGAATGATCTCAGACTTTGCCAATACTCTCATAGAGAAGCCAGTAATGATAATTATCTTTATTGTCCAGCATTTGACGATATCAAAACTGATGGGATTGGCAGTTTTAGAAAGCATTGGAAAACTAGTGAGCCCATTATTGTTAAGCAAGTATTTGATGGGTCATCCATTTTAAGCTGGGATCCAATGGTCATATGGAGAGACATTCTAGAGACAACATATGGGAAAGCAAAAGATGAAAACGGGATGGTTAAGGCCATAGATTGCTTAGATGGGTCTGAGGTTGATATTGAGCTTGCTCAGTTCATGAAAGGATACTTCAAAGGGCATATTCTTGAAAATGGTTGGCCACAGTTATTGAAATTGAAAGATTGGCCTTCACCTAGCGCTTCTGAAGAATTTCTACTGTACCAAAGACCCGAGTTTATCAGCAAACTACCTTTACTTCAGTATATTCACTCCAAGTGGGGCCTTTTCAATGTTGTAGCTAAATTTCCTCATTACTCCTTGCAGAATGACGTAGGACCCAAGATATATATATCTTATGGGATTAGTGATGAACTTGGTAGAGGTGATTCAGTGACAAATCTCCACTTCAATATGCGTGACATGGTGTACCTTTTGGTTCATACAAATGAAGTAAAGCTGAAGAACTGGCAGATAACTAAAATTGAAATGATGCAAAAAGATAAAGCTAATAAGGAATCAGAGGCAAAAGAATCAGGGATCCTCAAATATCTTCAAGGGGGAGTTCACCTTATTCCTTACTTGATATTTTCTGAGAGAAGAGGTCAATGGAAGGCAGCAGCCCAATCCCAAGAATTTATTCGAACACTACAGTGTTATTATAACAACACATATTTAGATGGTGataagcaaaaagcaattaacttACTCTTGGGGCATTTTCAACCCCAACAAGGAAATCCAGCACTATGGGAGGTAGATTCGGATCAGCATTACACTGTCAAGAAACATGGTCTGTATGTAGTAGATGACAGCGTTAGGTAA

Coding sequences of Glyma.09g108800

Limit To All Plant Sequences

>Glyma.09g108800.1 sequence-type=CDS polypeptide=Glyma.09g108800.1.p locus=Glyma.09g108800 ID=Glyma.09g108800.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGGGGTTCTGCAGGACACCATAAGTGAATTTTTTGCTTTTTCTGGGACTAAGATTCGAATACACGAGATACCTGTTCTTGATAAGTTACAGTATCTCCACGTGCTGCTGTCCCCAGTGCTTCCGGTGGTAAATAATTTCTGTAGGATACCTATTACTGATTATCATCGATGCTGTCCAAGTTGCTCATATGATTTGTGCCTTAATTGCTGTCGAGATCTTCGAGAAGCCACTGCAGATCACAATAAAGAACCTCAAACAGAACAAGCAAAAATTTCTGATCGAAATATATTAAGTAAATTTCTGCATTGGAGATCCAATGACAATGGAAGTATTCCATGTCCCCCTAAGGAGTATGGTGGCTGTGGTTATTCTTCATTAAATTTAAGCCCAATTTTCAAGATGAACTGGGTTGCAAAGTTGGTAAAAAATGTAGAGGAAATGGTTAGTGGCTGCAGAATTAGTAATGTTGATGGTCCACTGGAAACTGGGCTGAATGATCTCAGACTTTGCCAATACTCTCATAGAGAAGCCAGTAATGATAATTATCTTTATTGTCCAGCATTTGACGATATCAAAACTGATGGGATTGGCAGTTTTAGAAAGCATTGGAAAACTAGTGAGCCCATTATTGTTAAGCAAGTATTTGATGGGTCATCCATTTTAAGCTGGGATCCAATGGTCATATGGAGAGACATTCTAGAGACAACATATGGGAAAGCAAAAGATGAAAACGGGATGGTTAAGGCCATAGATTGCTTAGATGGGTCTGAGGTTGATATTGAGCTTGCTCAGTTCATGAAAGGATACTTCAAAGGGCATATTCTTGAAAATGGTTGGCCACAGTTATTGAAATTGAAAGATTGGCCTTCACCTAGCGCTTCTGAAGAATTTCTACTGTACCAAAGACCCGAGTTTATCAGCAAACTACCTTTACTTCAGTATATTCACTCCAAGTGGGGCCTTTTCAATGTTGTAGCTAAATTTCCTCATTACTCCTTGCAGAATGACGTAGGACCCAAGATATATATATCTTATGGGATTAGTGATGAACTTGGTAGAGGTGATTCAGTGACAAATCTCCACTTCAATATGCGTGACATGGTGTACCTTTTGGTTCATACAAATGAAGTAAAGCTGAAGAACTGGCAGATAACTAAAATTGAAATGATGCAAAAAGATAAAGCTAATAAGGAATCAGAGGCAAAAGAATCAGGGATCCTCAAATATCTTCAAGGGGGAGTTCACCTTATTCCTTACTTGATATTTTCTGAGAGAAGAGGTCAATGGAAGGCAGCAGCCCAATCCCAAGAATTTATTCGAACACTACAGTGTTATTATAACAACACATATTTAGATGGTGATAAGCAAAAAGCAATTAACTTACTCTTGGGGCATTTTCAACCCCAACAAGGAAATCCAGCACTATGGGAGGTAGATTCGGATCAGCATTACACTGTCAAGAAACATGGTCTGTATGTAGTAGATGACAGCGTTAGGTAA

>Glyma.09g108800.2 sequence-type=CDS polypeptide=Glyma.09g108800.2.p locus=Glyma.09g108800 ID=Glyma.09g108800.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGAACTGGGTTGCAAAGTTGGTAAAAAATGTAGAGGAAATGGTTAGTGGCTGCAGAATTAGTAATGTTGATGGTCCACTGGAAACTGGGCTGAATGATCTCAGACTTTGCCAATACTCTCATAGAGAAGCCAGTAATGATAATTATCTTTATTGTCCAGCATTTGACGATATCAAAACTGATGGGATTGGCAGTTTTAGAAAGCATTGGAAAACTAGTGAGCCCATTATTGTTAAGCAAGTATTTGATGGGTCATCCATTTTAAGCTGGGATCCAATGGTCATATGGAGAGACATTCTAGAGACAACATATGGGAAAGCAAAAGATGAAAACGGGATGGTTAAGGCCATAGATTGCTTAGATGGGTCTGAGGTTGATATTGAGCTTGCTCAGTTCATGAAAGGATACTTCAAAGGGCATATTCTTGAAAATGGTTGGCCACAGTTATTGAAATTGAAAGATTGGCCTTCACCTAGCGCTTCTGAAGAATTTCTACTGTACCAAAGACCCGAGTTTATCAGCAAACTACCTTTACTTCAGTATATTCACTCCAAGTGGGGCCTTTTCAATGTTGTAGCTAAATTTCCTCATTACTCCTTGCAGAATGACGTAGGACCCAAGATATATATATCTTATGGGATTAGTGATGAACTTGGTAGAGGTGATTCAGTGACAAATCTCCACTTCAATATGCGTGACATGGTGTACCTTTTGGTTCATACAAATGAAGTAAAGCTGAAGAACTGGCAGATAACTAAAATTGAAATGATGCAAAAAGATAAAGCTAATAAGGAATCAGAGGCAAAAGAATCAGGGATCCTCAAATATCTTCAAGGGGGAGTTCACCTTATTCCTTACTTGATATTTTCTGAGAGAAGAGGTCAATGGAAGGCAGCAGCCCAATCCCAAGAATTTATTCGAACACTACAGTGTTATTATAACAACACATATTTAGATGGTGATAAGCAAAAAGCAATTAACTTACTCTTGGGGCATTTTCAACCCCAACAAGGAAATCCAGCACTATGGGAGGTAGATTCGGATCAGCATTACACTGTCAAGAAACATGGTCTGTATGTAGTAGATGACAGCGTTAGGTAA

Predicted protein sequences of Glyma.09g108800

Limit To All Plant Sequences

>Glyma.09g108800.1.p sequence-type=predicted peptide transcript=Glyma.09g108800.1 locus=Glyma.09g108800 ID=Glyma.09g108800.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MGVLQDTISEFFAFSGTKIRIHEIPVLDKLQYLHVLLSPVLPVVNNFCRIPITDYHRCCPSCSYDLCLNCCRDLREATADHNKEPQTEQAKISDRNILSKFLHWRSNDNGSIPCPPKEYGGCGYSSLNLSPIFKMNWVAKLVKNVEEMVSGCRISNVDGPLETGLNDLRLCQYSHREASNDNYLYCPAFDDIKTDGIGSFRKHWKTSEPIIVKQVFDGSSILSWDPMVIWRDILETTYGKAKDENGMVKAIDCLDGSEVDIELAQFMKGYFKGHILENGWPQLLKLKDWPSPSASEEFLLYQRPEFISKLPLLQYIHSKWGLFNVVAKFPHYSLQNDVGPKIYISYGISDELGRGDSVTNLHFNMRDMVYLLVHTNEVKLKNWQITKIEMMQKDKANKESEAKESGILKYLQGGVHLIPYLIFSERRGQWKAAAQSQEFIRTLQCYYNNTYLDGDKQKAINLLLGHFQPQQGNPALWEVDSDQHYTVKKHGLYVVDDSVR*

>Glyma.09g108800.2.p sequence-type=predicted peptide transcript=Glyma.09g108800.2 locus=Glyma.09g108800 ID=Glyma.09g108800.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MNWVAKLVKNVEEMVSGCRISNVDGPLETGLNDLRLCQYSHREASNDNYLYCPAFDDIKTDGIGSFRKHWKTSEPIIVKQVFDGSSILSWDPMVIWRDILETTYGKAKDENGMVKAIDCLDGSEVDIELAQFMKGYFKGHILENGWPQLLKLKDWPSPSASEEFLLYQRPEFISKLPLLQYIHSKWGLFNVVAKFPHYSLQNDVGPKIYISYGISDELGRGDSVTNLHFNMRDMVYLLVHTNEVKLKNWQITKIEMMQKDKANKESEAKESGILKYLQGGVHLIPYLIFSERRGQWKAAAQSQEFIRTLQCYYNNTYLDGDKQKAINLLLGHFQPQQGNPALWEVDSDQHYTVKKHGLYVVDDSVR*

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