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Report for Sequence Feature Glyma.09g105000

Feature Type:gene_model
Chromosome:Gm09
Start:19500100
stop:19508436
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.09g105000
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G58500.1AT protein phosphatase 2A-4 JGI N/AIEA
GO:0006470GO-bp protein dephosphorylation EnsemblGenomesN/AIEA
GO:0004721GO-mf phosphoprotein phosphatase activity EnsemblGenomesN/AIEA
GO:0016787GO-mf hydrolase activity EnsemblGenomesN/AIEA
GO:0016787GO-mf hydrolase activity JGI N/AIEA
KOG0371 KOG Serine/threonine protein phosphatase 2A, catalytic subunit JGI N/AIEA
PTHR11668Panther SERINE/THREONINE PROTEIN PHOSPHATASE JGI N/AIEA
PTHR11668:SF21Panther SERINE/THREONINE-PROTEIN PHOSPHATASE 2A CATALYTIC SUBUNIT BETA ISOFORM JGI N/AIEA
PF00149PFAM Calcineurin-like phosphoesterase JGI N/AIEA

Expression Patterns of Glyma.09g105000
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.09g105000 not represented in the dataset
Glyma.09g105000 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.09g105000
ParalogEvidenceComments
Glyma.02g169200 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.09g105000 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma09g15900 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.09g105000
>Glyma.09g105000.2 sequence-type=transcript locus=Glyma.09g105000 ID=Glyma.09g105000.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
AAATCAACCGCCATTACATAAAACAATCAATTTTTTTTTTCACTAACTCCGCTCTCTGCTCTTCTTCTTCCCCCACACCGGAGGAGAGAAAACCAAAATCACTCTTCACTGTTAGGGTTAGGGTTTCGATTTTCCCCTTATCCAATCTCGCAGCAGCGAGATGGGCGCCAATTCGTTGCCATCGGCGGAATCAAACTTCGATCTCGACGAGCAGATCTCGCAGCTCATGCAATGCAAGCCACTTTCCGAGCACCAGGTTAGAGTTTTATGTGAGAAGGCTAAGGAGATTTTGATGGAAGAAAGTAATGTCCAGCCTGTGAAAAGCCCTGTGACAATTTGTGGTGATATTCATGGGCAGTTTCATGACCTTGCTGAACTATTTCGAATTGGAGGGAAGGTATCAGTTCTGACTATCACTTTCCTTTTGTATTCAACTCCCTGTTTCAGCTGGGGAATGTCTTAACTAACTAACTGAGACCTGCCATAGAAAAGGCTTTTGAAGATTGAAGTGCTTCAGAGGTATCGCAGAGTAGATTGTATAACCAGGGAACTACTACTTGAATTCACTACAACCCTAATATTACCACGTTAAAGTTTACTAACATGTCACTGGTGCAAAATGAACCTTTTTGTGATAAGGTTTCTGTTTTTGTTTTTTATATTATACTTTGCTGATTATTTAGCTATGGAATCTAAGAATATTTGTTTTGTTTGCAGTGTCCAGATACTAATTACTTGTTTATGGGTGATTATGTGGACCGGGGTTATTATTCAGTTGAAACTGTAACACTTCTTGTGTCACTGAAAGTGCGATATCCTCAGCGAATTACTATTCTTAGAGGAAACCATGAAAGCCGTCAGATCACTCAAGTATACGGATTTTACGATGAATGCCTCAGAAAATATGGTAATGCTAGTGTTTGGAAGATCTTTACAGACCTTTTCGATTTCTTTCCATTGACTGCATTGGTTGAGTCTGAAATATTTTGTTTGCATGGTGGGCTTTCACCTTCAATTGAGACTCTTGATAACATAAGGAACTTCGATCGTGTTCAAGAGGTTCCTCATGAAGGGCCCATGTGCGATCTGTTGTGGTCTGATCCAGATGATAGGTGCGGCTGGGGAATTTCTCCTCGTGGTGCTGGATATACATTTGGCCAGGATATATCCGAACAATTTAATCACTCAAACAAGCTCAAGTTAATTGCTAGAGCTCATCAGCTGGTTATGGATGGATTTAACTGGGCTCATGAACAAAAGGTGGTTACCATTTTTAGTGCACCTAACTACTGTTATCGATGTGGGAACATGGCTTCCATTTTGGAGGTTGATGATTCCAAGGGCCATACGTTTATACAGTTTGATCCTGCTCCCAGGAGAGGAGAACCTGATGTCACCCGTAGAACGCCTGATTACTTCCTATGATGTTGCTGCCGCATATCATACTCCTGGCACAGTTACATCTCATTCTGCACAAATTTCTAGTACTTTGTGCATCCTCATCCTCGTTGATGAGATTGCTGTAAGCACTTAAAATCTTTGGGTATGCACTCCAAACTTTTTTGGTCATTGCCCAAATACCGCATTAATGTAAATTAGGTAGGTAACATTCCAGTTTTTTGTGACGCTCAAGAACTTGCTGGAGGTCCAATTGGAGAAGTCTCCTAGATGATGGCCAGGTCCGAATATGTATTGTTCCAGCGCAATGTGGATATTTTTTTGTTTGTGTTTCCCCATCTCTAGAAGTAATGACTGGGATTTTATATTTCTGTTGATGATTTGCTTTGCTATGTTCTATCAATTTTCAGTAAAAGTTGCATGATAATAGTGATTCAGTTTTGTTCTTTACTAATTATGTTCAATTTCATTCTTAGAGCTTATTGGTGGTCATCACTTGGCTTCAGATTGCCAGTGAAAAGAGTATATATAAACTCGTCAAACTTTTTGTTTAGTAGTCAAATTAATTAGTTGTGAACGAAAGGAAATAGGA
Coding sequences of Glyma.09g105000
>Glyma.09g105000.1 sequence-type=CDS polypeptide=Glyma.09g105000.1.p locus=Glyma.09g105000 ID=Glyma.09g105000.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGGCGCCAATTCGTTGCCATCGGCGGAATCAAACTTCGATCTCGACGAGCAGATCTCGCAGCTCATGCAATGCAAGCCACTTTCCGAGCACCAGGTTAGAGTTTTATGTGAGAAGGCTAAGGAGATTTTGATGGAAGAAAGTAATGTCCAGCCTGTGAAAAGCCCTGTGACAATTTGTGGTGATATTCATGGGCAGTTTCATGACCTTGCTGAACTATTTCGAATTGGAGGGAAGTGTCCAGATACTAATTACTTGTTTATGGGTGATTATGTGGACCGGGGTTATTATTCAGTTGAAACTGTAACACTTCTTGTGTCACTGAAAGTGCGATATCCTCAGCGAATTACTATTCTTAGAGGAAACCATGAAAGCCGTCAGATCACTCAAGTATACGGATTTTACGATGAATGCCTCAGAAAATATGGTAATGCTAGTGTTTGGAAGATCTTTACAGACCTTTTCGATTTCTTTCCATTGACTGCATTGGTTGAGTCTGAAATATTTTGTTTGCATGGTGGGCTTTCACCTTCAATTGAGACTCTTGATAACATAAGGAACTTCGATCGTGTTCAAGAGGTTCCTCATGAAGGGCCCATGTGCGATCTGTTGTGGTCTGATCCAGATGATAGGTGCGGCTGGGGAATTTCTCCTCGTGGTGCTGGATATACATTTGGCCAGGATATATCCGAACAATTTAATCACTCAAACAAGCTCAAGTTAATTGCTAGAGCTCATCAGCTGGTTATGGATGGATTTAACTGGGCTCATGAACAAAAGGTGGTTACCATTTTTAGTGCACCTAACTACTGTTATCGATGTGGGAACATGGCTTCCATTTTGGAGGTTGATGATTCCAAGGGCCATACGTTTATACAGTTTGATCCTGCTCCCAGGAGAGGAGAACCTGATGTCACCCGTAGAACGCCTGATTACTTCCTATGA

>Glyma.09g105000.2 sequence-type=CDS polypeptide=Glyma.09g105000.2.p locus=Glyma.09g105000 ID=Glyma.09g105000.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGGTGATTATGTGGACCGGGGTTATTATTCAGTTGAAACTGTAACACTTCTTGTGTCACTGAAAGTGCGATATCCTCAGCGAATTACTATTCTTAGAGGAAACCATGAAAGCCGTCAGATCACTCAAGTATACGGATTTTACGATGAATGCCTCAGAAAATATGGTAATGCTAGTGTTTGGAAGATCTTTACAGACCTTTTCGATTTCTTTCCATTGACTGCATTGGTTGAGTCTGAAATATTTTGTTTGCATGGTGGGCTTTCACCTTCAATTGAGACTCTTGATAACATAAGGAACTTCGATCGTGTTCAAGAGGTTCCTCATGAAGGGCCCATGTGCGATCTGTTGTGGTCTGATCCAGATGATAGGTGCGGCTGGGGAATTTCTCCTCGTGGTGCTGGATATACATTTGGCCAGGATATATCCGAACAATTTAATCACTCAAACAAGCTCAAGTTAATTGCTAGAGCTCATCAGCTGGTTATGGATGGATTTAACTGGGCTCATGAACAAAAGGTGGTTACCATTTTTAGTGCACCTAACTACTGTTATCGATGTGGGAACATGGCTTCCATTTTGGAGGTTGATGATTCCAAGGGCCATACGTTTATACAGTTTGATCCTGCTCCCAGGAGAGGAGAACCTGATGTCACCCGTAGAACGCCTGATTACTTCCTATGA
Predicted protein sequences of Glyma.09g105000
>Glyma.09g105000.1.p sequence-type=predicted peptide transcript=Glyma.09g105000.1 locus=Glyma.09g105000 ID=Glyma.09g105000.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MGANSLPSAESNFDLDEQISQLMQCKPLSEHQVRVLCEKAKEILMEESNVQPVKSPVTICGDIHGQFHDLAELFRIGGKCPDTNYLFMGDYVDRGYYSVETVTLLVSLKVRYPQRITILRGNHESRQITQVYGFYDECLRKYGNASVWKIFTDLFDFFPLTALVESEIFCLHGGLSPSIETLDNIRNFDRVQEVPHEGPMCDLLWSDPDDRCGWGISPRGAGYTFGQDISEQFNHSNKLKLIARAHQLVMDGFNWAHEQKVVTIFSAPNYCYRCGNMASILEVDDSKGHTFIQFDPAPRRGEPDVTRRTPDYFL*

>Glyma.09g105000.2.p sequence-type=predicted peptide transcript=Glyma.09g105000.2 locus=Glyma.09g105000 ID=Glyma.09g105000.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MGDYVDRGYYSVETVTLLVSLKVRYPQRITILRGNHESRQITQVYGFYDECLRKYGNASVWKIFTDLFDFFPLTALVESEIFCLHGGLSPSIETLDNIRNFDRVQEVPHEGPMCDLLWSDPDDRCGWGISPRGAGYTFGQDISEQFNHSNKLKLIARAHQLVMDGFNWAHEQKVVTIFSAPNYCYRCGNMASILEVDDSKGHTFIQFDPAPRRGEPDVTRRTPDYFL*






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