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Report for Sequence Feature Glyma.09g103400

Feature Type:gene_model
Chromosome:Gm09
Start:19118997
stop:19121838
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.09g103400
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G37270.1AT ribosomal protein 5B JGI N/AIEA
GO:0000028GO-bp ribosomal small subunit assembly EnsemblGenomesN/AIEA
GO:0006412GO-bp translation EnsemblGenomesN/AIEA
GO:0005840GO-cc ribosome EnsemblGenomesN/AIEA
GO:0015935GO-cc small ribosomal subunit EnsemblGenomesN/AIEA
GO:0022627GO-cc cytosolic small ribosomal subunit EnsemblGenomesN/AIEA
GO:0003723GO-mf RNA binding EnsemblGenomesN/AIEA
GO:0003729GO-mf mRNA binding EnsemblGenomesN/AIEA
GO:0003735GO-mf structural constituent of ribosome EnsemblGenomesN/AIEA
GO:0019843GO-mf rRNA binding EnsemblGenomesN/AIEA
KOG3291 KOG Ribosomal protein S7 JGI N/AIEA
PTHR11205Panther RIBOSOMAL PROTEIN S7 JGI N/AIEA
PTHR11205:SF1Panther JGI N/AIEA
PF00177PFAM Ribosomal protein S7p/S5e JGI N/AIEA

Expression Patterns of Glyma.09g103400
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.09g103400 not represented in the dataset
Glyma.09g103400 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.09g103400
ParalogEvidenceComments
Glyma.02g167900 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.09g103400 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma09g15680 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.09g103400
>Glyma.09g103400.2 sequence-type=transcript locus=Glyma.09g103400 ID=Glyma.09g103400.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
TTTTCTTCTGCTTCTGTTCTTCTCTTTCTCTCTCTTCCCTTCGCTAACTCGTTCTCTATATTCAATTGCTTGTTCAGCCATGGCCGAAATCGAAGCTACCGTTCCAGATCCCTCTCAAATCGACGTCAAACTTTTCAACCGCTGGAGCTTCGACGACGTTGAGGTTACTGATATGTCTCTGGCTGATTACATTGGAGTGTCCCCGTCAAAGCATGCTACATATGTTCCTCACACTGCTGGTAGGTACTCAGTGAAGAGGTTCAGGAAGGCGCAGTGCCCCATTGTTGAGAGACTCACCAACTCTCTCATGATGCACGGAAGGAACAATGGAAAGAAGCTCATGGCTGTCAGGATTATCAAGCATGCAATGGAAATTATTCACTTGCTCACTGACCTGAACCCAATTCAGGTCATTGTTGATGCCGTCATCAATAGTGGTCCCCGTGAAGATGCAACTAGAATTGGTTCTGCTGGAGTGGTGAGGAGACAGGCCGTTGATATCTCACCCCTTAGACGTGTTAATCAGGCCATCTATCTTCTAACAACAGGTGCTCGGGAAGCTGCTTTCAGAAACATCAAGACAATTGCTGAATGCTTGGCTGATGAACTTATTAATGCAGCTAAAGGTTCATCCAACAGTTATGCTATCAAGAAAAAGGATGAAATTGAGAGAGTTGCCAAGGCTAATCGTTAAACCAACAAAGGATACAGTATTGGTGACCAGAAAGATTTTGTTTCGACCTTTGAACTTCATTTTCAAATATTGTGTACTAGTTTTGATGGCTTTAGCTATTTTTTAGTTCGCACAAGGATTTACATGAACGATTTTGTTTCCTGGACGAAAATTTATATTTAAAGACTTGGAGTTTAGTAAGAGCCTGCTTTATAAATTGTTGTGACGATTTAAATGGCTAATGGTGTCGCTTCTTTGTTTTTGCCTGGAGTTCGTCTGTGATAATTGCTCTAAAGCCCAAATCTAATGTTTAATTAGTGTTGTCATAATCTAATCATAACAGTGGAATC
Coding sequences of Glyma.09g103400
>Glyma.09g103400.1 sequence-type=CDS polypeptide=Glyma.09g103400.1.p locus=Glyma.09g103400 ID=Glyma.09g103400.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCCGAAATCGAAGCTACCGTTCCAGATCCCTCTCAAATCGACGTCAAACTTTTCAACCGCTGGAGCTTCGACGACGTTGAGGTTACTGATATGTCTCTGGCTGATTACATTGGAGTGTCCCCGTCAAAGCATGCTACATATGTTCCTCACACTGCTGGTAGGTACTCAGTGAAGAGGTTCAGGAAGGCGCAGTGCCCCATTGTTGAGAGACTCACCAACTCTCTCATGATGCACGGAAGGAACAATGGAAAGAAGCTCATGGCTGTCAGGATTATCAAGCATGCAATGGAAATTATTCACTTGCTCACTGACCTGAACCCAATTCAGGTCATTGTTGATGCCGTCATCAATAGTGGTCCCCGTGAAGATGCAACTAGAATTGGTTCTGCTGGAGTGGTGAGGAGACAGGCCGTTGATATCTCACCCCTTAGACGTGTTAATCAGGCCATCTATCTTCTAACAACAGGTGCTCGGGAAGCTGCTTTCAGAAACATCAAGACAATTGCTGAATGCTTGGCTGATGAACTTATTAATGCAGCTAAAGGTTCATCCAACAGTTATGCTATCAAGAAAAAGGATGAAATTGAGAGAGTTGCCAAGGCTAATCGTTAA

>Glyma.09g103400.2 sequence-type=CDS polypeptide=Glyma.09g103400.2.p locus=Glyma.09g103400 ID=Glyma.09g103400.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCCGAAATCGAAGCTACCGTTCCAGATCCCTCTCAAATCGACGTCAAACTTTTCAACCGCTGGAGCTTCGACGACGTTGAGGTTACTGATATGTCTCTGGCTGATTACATTGGAGTGTCCCCGTCAAAGCATGCTACATATGTTCCTCACACTGCTGGTAGGTACTCAGTGAAGAGGTTCAGGAAGGCGCAGTGCCCCATTGTTGAGAGACTCACCAACTCTCTCATGATGCACGGAAGGAACAATGGAAAGAAGCTCATGGCTGTCAGGATTATCAAGCATGCAATGGAAATTATTCACTTGCTCACTGACCTGAACCCAATTCAGGTCATTGTTGATGCCGTCATCAATAGTGGTCCCCGTGAAGATGCAACTAGAATTGGTTCTGCTGGAGTGGTGAGGAGACAGGCCGTTGATATCTCACCCCTTAGACGTGTTAATCAGGCCATCTATCTTCTAACAACAGGTGCTCGGGAAGCTGCTTTCAGAAACATCAAGACAATTGCTGAATGCTTGGCTGATGAACTTATTAATGCAGCTAAAGGTTCATCCAACAGTTATGCTATCAAGAAAAAGGATGAAATTGAGAGAGTTGCCAAGGCTAATCGTTAA
Predicted protein sequences of Glyma.09g103400
>Glyma.09g103400.1.p sequence-type=predicted peptide transcript=Glyma.09g103400.1 locus=Glyma.09g103400 ID=Glyma.09g103400.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MAEIEATVPDPSQIDVKLFNRWSFDDVEVTDMSLADYIGVSPSKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIIKHAMEIIHLLTDLNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR*

>Glyma.09g103400.2.p sequence-type=predicted peptide transcript=Glyma.09g103400.2 locus=Glyma.09g103400 ID=Glyma.09g103400.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MAEIEATVPDPSQIDVKLFNRWSFDDVEVTDMSLADYIGVSPSKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIIKHAMEIIHLLTDLNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR*






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