Glyma.09g102900

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Report for Sequence Feature Glyma.09g102900

Feature Type:	gene_model
Chromosome:	Gm09
Start:	18988001
stop:	18992387
Source:	JGI
Version:	Wm82.a2.v1
High confidence:	yes

A previous version of this gene model can be found here:

Annotations for Glyma.09g102900

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G41900.1	AT	CCCH-type zinc finger protein with ARM repeat domain	JGI	N/A	IEA
GO:0005515	GO-mf	protein binding	EnsemblGenomes	N/A	IEA
GO:0005515	GO-mf	protein binding	JGI	N/A	IEA
GO:0046872	GO-mf	metal ion binding	EnsemblGenomes	N/A	IEA
GO:0046872	GO-mf	metal ion binding	JGI	N/A	IEA
KOG1595	KOG	CCCH-type Zn-finger protein	JGI	N/A	IEA
PTHR14493	Panther	UNCHARACTERIZED	JGI	N/A	IEA
PTHR14493:SF22	Panther		JGI	N/A	IEA
PF00023	PFAM	Ankyrin repeat	JGI	N/A	IEA
PF00642	PFAM	Zinc finger C-x8-C-x5-C-x3-H type (and similar)	JGI	N/A	IEA

Expression Patterns of Glyma.09g102900

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.09g102900 not represented in the dataset	Glyma.09g102900 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.

Gene information in GlycineMine developed by LIS.

Related Plant Genes

Gene families from PhyloGenes.

Paralogs of Glyma.09g102900

Paralog	Evidence	Comments
Glyma.15g274800	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.09g102900 Gene Call Version Wm82.a2.v1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma09g15600	Wm82.a1.v1.1	IGC	As supplied by JGI

Transcripts of Glyma.09g102900

Limit To All Plant Sequences

>Glyma.09g102900.2 sequence-type=transcript locus=Glyma.09g102900 ID=Glyma.09g102900.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
TGGTTTTTAAATTCGCCCTAAATTTCTCCGCATTTCAATTTCATTTTCAATTTCGAAGACGTTActctctctctgtctgtctctctctctctctctcCGATCAACAAAGCTCTTCCAATGTTTCCTTGGTTCTATAGATGGAGATGGAAGCTCTGAGTCTCGCTTTCGCCGAATCTCGTTTTCTGTGTTCGGATTTCGCTGTTCTCCGTTTGGTTTGACGAAAAAAAAGCCGTTTCCTTCCTCATCCCGTTGCTTTTTTGCTCTTCGGGTTTGGAATTCGATCTTCACCTTATCCACTCGTAACCGAGAAATCAAAATCTCTTTCAACTTCATCTTCATCAGCGGTAGAAGGTTCATCTAACAGCAAAGACATGAAAAATTTAACAGTTCATACTGAAGATTCTTTTTCCTGCTTACTTGAGCTTGCTTCTAACAATGATTTTGAAGATTTAAAGCTAGCTTTAGATAGGGATGCTTCTCTAATAAATGAAGTTGGCCTCTGGTATGTCCGCCAGATTGGATCCAAACAAATTGTTCTTCAGCCCCGAACTCCTTTGATGGTTGCTGCTATGTATGGGAGTATAGATGTTCTAAAACTTTTACTCTCTTGTCCAGAGGCTGATGTCAATTTCTCTTGCGGGACAGATAAAAGCACTGCCCTACACTGTGCTGCATTGGGTGGTTCTGTTAATGCAGTCGATGTTGTCAAATTGCTCTTATCAGCtggtgctgatgtcagttgtgttgatgctaatggaaatcgtcctgttgatgttcttgttgTTCCTCCTAAGCTTGAAGGTCTGAAAGCAACTCTTGAAGATCTACTTTCAGATAGTACTTCCGTTGGGTCTGTTGGTGACTGTTTTATTCCAGTATCAGTGAATTCATCATGTTCTGATTCAGCTGCTCATTTATCATCACCTGAAAATGGGTTGCCATTCTCAGCTATGGCATCAAAGTTTGCTGATACAGCTGTTAATTCTGCTTCTGAGAAGAAAGAATATCCAATTGATCCATCACTGCCTGATATAAAGAACAGCATTTATGCGACAGATGAGTTTCGCATGTTTTCATTTAAGGTGCGACCTTGTTCCCGGGCATACTCTCATGATTGGACTGAGTGTCCTTTTGTTCATCCTGGAGAGAATGCTCGTAGGAGAGACCCCCGAAAGTTCCATTACAGCTGTGTGCCTTGCCCTGATTTTAGAAAGGGTGCTTGTAGACGTGGGGACATGTGTGAATATGCTCATGGAGTATTTGAGTGCTGGCTACACCCTGCCCAATATCGGACAAGGCTGTGCAAAGATGGTACTAGTTGCAACAGAAGGGTATGCTTTTTTGCTCACACAGCAGAAGAGCTGCGTCCATTATACGTGTCCACCGGATCTGCTGTTCCCTCGCCTCGCTCATCTGCCTCTACTCCAAATGTCATGGACATGGCTGCTGCAATGAGCCTCTTTCCTGGTTCACCGTCATCAATTTCTTCCATGTCTCCATCTCCCTTTGCGCAGCCAATGTCTCCATCTACAAGTGGCATTTCTCACTCATCTAATGCTTGGCCGCAGCCAAATGTTCCAGCTCTTCATTTACCAGGAAGCAATATTCAAACTAGCCGATTGAGATCTTCTCTTAGTGCTCGTGACATGCCACCAGAAGACTTTGATGTGTTGCAAGATTTTGATGGCCAGCAACACCTTTTGAGTGACTTGGGCTGTTTCTCGCAGCCCCGTCCTGGCGCCATTTCAGTGAGTCGATCTGGTCGGTCTAAGACACTAACCCCATCAAATCTGGATGAACTATTCTCTGCCGAGATTTCTTCATCTCCCCGGTATTCTGACCCAGCAGTGGCTTCTGTATTTTCCCCAAGACACAAATCAACTATTATGAATCAGTTTCAACAGCTTCAAAGTTCGTTATCACCCATAAACACAAGTGTCTCCTCTCCTAGGAATGTTGAGCATCCTCTATTACAGGCTTCATTTGGTGTCTCTTCTCCTGGAAGGATGTCACCAAGAAGTATGGAGCCAATCTCTCCAATGAGCTCTCGATTATCAGCATTTGCACAGCGTGAGAAACAGCACCAACAGCTGCGAAGCCTTAGTTCAAGGGACCTTGGTGCCAATGTTCCTGCCTCAATGGTTGGGTCCCCAGTTAACTCCTGGTCTAATTGGGGTTCTCCTCATGGGAATGGAAAAGTAGATTGGTCAGTAAATGGAAATGAGTTAGGTCGATTGCAGAGATCATCATCATTTGAGCTTGGAAACAATGGGGAGGAGCCTGATCTATCCTGGGTTCAATCCCTTGTCAAGGAATCTCCGTCCGAGATAAAAGAGAAGTTGACAGGTTCTGGCCCTGTTGCATCTGTTGATGGACCGAGTTCAAATCCAAAGTCAAATCCGCAAGTTGAGTCTGTTGATCATTCTGTTCTAGGAGCCTGGCTTGAGCAAATGCAGCTGGATCAGCTTGTAGTCTAATCAAATTTGACCCATTCCATCTTGTGATAGGTATTTAATTTCACAACGTATTCTTTTTGTCAATTTTTTTGGGTGGAGCAAGGAGAGGGAATGTAATGATACTGAAGCGAGGGATGGCTGCAAAGTACCCGAATGATAATCTATTTTTCCCCCCCCATTATTTTGTCATTCATTGTTTTACTAAAGAGCTTCAGGGGGAGTGGTAAGAAACCCTCTCTCTGGGGTTGATGATATCCCAGTAAAAAAGAAAATATTCTTCCAAAACTCTAGTTTCAGGACTCTTTTCTTCATTTTATTCCTAGCCATGGAAAAACCAAGAGCCTCATATTTGTATTCAAGTTCGTTTTCTTGGTAGGAATCTGCTAGTATATTGCTATGCTATTGCATGTATAGAAGACTAGAGTGTGTTTATTGTTAAGGAATTAGAGGTGATCTGCGCCATTAATATTTATTGCCGGCAGATCGTTTAGACATACTGAAGGCTACTGTGTATGTATCGGTTATTTTCAAATTCAATGTAGCTGTTATATTTATGGGTATTATCT

Coding sequences of Glyma.09g102900

Limit To All Plant Sequences

>Glyma.09g102900.1 sequence-type=CDS polypeptide=Glyma.09g102900.1.p locus=Glyma.09g102900 ID=Glyma.09g102900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGTGCGGTGGTCCAGAGAAATCAAAATCTCTTTCAACTTCATCTTCATCAGCGGTAGAAGGTTCATCTAACAGCAAAGACATGAAAAATTTAACAGTTCATACTGAAGATTCTTTTTCCTGCTTACTTGAGCTTGCTTCTAACAATGATTTTGAAGATTTAAAGCTAGCTTTAGATAGGGATGCTTCTCTAATAAATGAAGTTGGCCTCTGGTATGTCCGCCAGATTGGATCCAAACAAATTGTTCTTCAGCCCCGAACTCCTTTGATGGTTGCTGCTATGTATGGGAGTATAGATGTTCTAAAACTTTTACTCTCTTGTCCAGAGGCTGATGTCAATTTCTCTTGCGGGACAGATAAAAGCACTGCCCTACACTGTGCTGCATTGGGTGGTTCTGTTAATGCAGTCGATGTTGTCAAATTGCTCTTATCAGCTGGTGCTGATGTCAGTTGTGTTGATGCTAATGGAAATCGTCCTGTTGATGTTCTTGTTGTTCCTCCTAAGCTTGAAGGTCTGAAAGCAACTCTTGAAGATCTACTTTCAGATAGTACTTCCGTTGGGTCTGTTGGTGACTGTTTTATTCCAGTATCAGTGAATTCATCATGTTCTGATTCAGCTGCTCATTTATCATCACCTGAAAATGGGTTGCCATTCTCAGCTATGGCATCAAAGTTTGCTGATACAGCTGTTAATTCTGCTTCTGAGAAGAAAGAATATCCAATTGATCCATCACTGCCTGATATAAAGAACAGCATTTATGCGACAGATGAGTTTCGCATGTTTTCATTTAAGGTGCGACCTTGTTCCCGGGCATACTCTCATGATTGGACTGAGTGTCCTTTTGTTCATCCTGGAGAGAATGCTCGTAGGAGAGACCCCCGAAAGTTCCATTACAGCTGTGTGCCTTGCCCTGATTTTAGAAAGGGTGCTTGTAGACGTGGGGACATGTGTGAATATGCTCATGGAGTATTTGAGTGCTGGCTACACCCTGCCCAATATCGGACAAGGCTGTGCAAAGATGGTACTAGTTGCAACAGAAGGGTATGCTTTTTTGCTCACACAGCAGAAGAGCTGCGTCCATTATACGTGTCCACCGGATCTGCTGTTCCCTCGCCTCGCTCATCTGCCTCTACTCCAAATGTCATGGACATGGCTGCTGCAATGAGCCTCTTTCCTGGTTCACCGTCATCAATTTCTTCCATGTCTCCATCTCCCTTTGCGCAGCCAATGTCTCCATCTACAAGTGGCATTTCTCACTCATCTAATGCTTGGCCGCAGCCAAATGTTCCAGCTCTTCATTTACCAGGAAGCAATATTCAAACTAGCCGATTGAGATCTTCTCTTAGTGCTCGTGACATGCCACCAGAAGACTTTGATGTGTTGCAAGATTTTGATGGCCAGCAACACCTTTTGAGTGACTTGGGCTGTTTCTCGCAGCCCCGTCCTGGCGCCATTTCAGTGAGTCGATCTGGTCGGTCTAAGACACTAACCCCATCAAATCTGGATGAACTATTCTCTGCCGAGATTTCTTCATCTCCCCGGTATTCTGACCCAGCAGTGGCTTCTGTATTTTCCCCAAGACACAAATCAACTATTATGAATCAGTTTCAACAGCTTCAAAGTTCGTTATCACCCATAAACACAAGTGTCTCCTCTCCTAGGAATGTTGAGCATCCTCTATTACAGGCTTCATTTGGTGTCTCTTCTCCTGGAAGGATGTCACCAAGAAGTATGGAGCCAATCTCTCCAATGAGCTCTCGATTATCAGCATTTGCACAGCGTGAGAAACAGCACCAACAGCTGCGAAGCCTTAGTTCAAGGGACCTTGGTGCCAATGTTCCTGCCTCAATGGTTGGGTCCCCAGTTAACTCCTGGTCTAATTGGGGTTCTCCTCATGGGAATGGAAAAGTAGATTGGTCAGTAAATGGAAATGAGTTAGGTCGATTGCAGAGATCATCATCATTTGAGCTTGGAAACAATGGGGAGGAGCCTGATCTATCCTGGGTTCAATCCCTTGTCAAGGAATCTCCGTCCGAGATAAAAGAGAAGTTGACAGGTTCTGGCCCTGTTGCATCTGTTGATGGACCGAGTTCAAATCCAAAGTCAAATCCGCAAGTTGAGTCTGTTGATCATTCTGTTCTAGGAGCCTGGCTTGAGCAAATGCAGCTGGATCAGCTTGTAGTCTAA

>Glyma.09g102900.2 sequence-type=CDS polypeptide=Glyma.09g102900.2.p locus=Glyma.09g102900 ID=Glyma.09g102900.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGAAAAATTTAACAGTTCATACTGAAGATTCTTTTTCCTGCTTACTTGAGCTTGCTTCTAACAATGATTTTGAAGATTTAAAGCTAGCTTTAGATAGGGATGCTTCTCTAATAAATGAAGTTGGCCTCTGGTATGTCCGCCAGATTGGATCCAAACAAATTGTTCTTCAGCCCCGAACTCCTTTGATGGTTGCTGCTATGTATGGGAGTATAGATGTTCTAAAACTTTTACTCTCTTGTCCAGAGGCTGATGTCAATTTCTCTTGCGGGACAGATAAAAGCACTGCCCTACACTGTGCTGCATTGGGTGGTTCTGTTAATGCAGTCGATGTTGTCAAATTGCTCTTATCAGCTGGTGCTGATGTCAGTTGTGTTGATGCTAATGGAAATCGTCCTGTTGATGTTCTTGTTGTTCCTCCTAAGCTTGAAGGTCTGAAAGCAACTCTTGAAGATCTACTTTCAGATAGTACTTCCGTTGGGTCTGTTGGTGACTGTTTTATTCCAGTATCAGTGAATTCATCATGTTCTGATTCAGCTGCTCATTTATCATCACCTGAAAATGGGTTGCCATTCTCAGCTATGGCATCAAAGTTTGCTGATACAGCTGTTAATTCTGCTTCTGAGAAGAAAGAATATCCAATTGATCCATCACTGCCTGATATAAAGAACAGCATTTATGCGACAGATGAGTTTCGCATGTTTTCATTTAAGGTGCGACCTTGTTCCCGGGCATACTCTCATGATTGGACTGAGTGTCCTTTTGTTCATCCTGGAGAGAATGCTCGTAGGAGAGACCCCCGAAAGTTCCATTACAGCTGTGTGCCTTGCCCTGATTTTAGAAAGGGTGCTTGTAGACGTGGGGACATGTGTGAATATGCTCATGGAGTATTTGAGTGCTGGCTACACCCTGCCCAATATCGGACAAGGCTGTGCAAAGATGGTACTAGTTGCAACAGAAGGGTATGCTTTTTTGCTCACACAGCAGAAGAGCTGCGTCCATTATACGTGTCCACCGGATCTGCTGTTCCCTCGCCTCGCTCATCTGCCTCTACTCCAAATGTCATGGACATGGCTGCTGCAATGAGCCTCTTTCCTGGTTCACCGTCATCAATTTCTTCCATGTCTCCATCTCCCTTTGCGCAGCCAATGTCTCCATCTACAAGTGGCATTTCTCACTCATCTAATGCTTGGCCGCAGCCAAATGTTCCAGCTCTTCATTTACCAGGAAGCAATATTCAAACTAGCCGATTGAGATCTTCTCTTAGTGCTCGTGACATGCCACCAGAAGACTTTGATGTGTTGCAAGATTTTGATGGCCAGCAACACCTTTTGAGTGACTTGGGCTGTTTCTCGCAGCCCCGTCCTGGCGCCATTTCAGTGAGTCGATCTGGTCGGTCTAAGACACTAACCCCATCAAATCTGGATGAACTATTCTCTGCCGAGATTTCTTCATCTCCCCGGTATTCTGACCCAGCAGTGGCTTCTGTATTTTCCCCAAGACACAAATCAACTATTATGAATCAGTTTCAACAGCTTCAAAGTTCGTTATCACCCATAAACACAAGTGTCTCCTCTCCTAGGAATGTTGAGCATCCTCTATTACAGGCTTCATTTGGTGTCTCTTCTCCTGGAAGGATGTCACCAAGAAGTATGGAGCCAATCTCTCCAATGAGCTCTCGATTATCAGCATTTGCACAGCGTGAGAAACAGCACCAACAGCTGCGAAGCCTTAGTTCAAGGGACCTTGGTGCCAATGTTCCTGCCTCAATGGTTGGGTCCCCAGTTAACTCCTGGTCTAATTGGGGTTCTCCTCATGGGAATGGAAAAGTAGATTGGTCAGTAAATGGAAATGAGTTAGGTCGATTGCAGAGATCATCATCATTTGAGCTTGGAAACAATGGGGAGGAGCCTGATCTATCCTGGGTTCAATCCCTTGTCAAGGAATCTCCGTCCGAGATAAAAGAGAAGTTGACAGGTTCTGGCCCTGTTGCATCTGTTGATGGACCGAGTTCAAATCCAAAGTCAAATCCGCAAGTTGAGTCTGTTGATCATTCTGTTCTAGGAGCCTGGCTTGAGCAAATGCAGCTGGATCAGCTTGTAGTCTAA

Predicted protein sequences of Glyma.09g102900

Limit To All Plant Sequences

>Glyma.09g102900.1.p sequence-type=predicted peptide transcript=Glyma.09g102900.1 locus=Glyma.09g102900 ID=Glyma.09g102900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MCGGPEKSKSLSTSSSSAVEGSSNSKDMKNLTVHTEDSFSCLLELASNNDFEDLKLALDRDASLINEVGLWYVRQIGSKQIVLQPRTPLMVAAMYGSIDVLKLLLSCPEADVNFSCGTDKSTALHCAALGGSVNAVDVVKLLLSAGADVSCVDANGNRPVDVLVVPPKLEGLKATLEDLLSDSTSVGSVGDCFIPVSVNSSCSDSAAHLSSPENGLPFSAMASKFADTAVNSASEKKEYPIDPSLPDIKNSIYATDEFRMFSFKVRPCSRAYSHDWTECPFVHPGENARRRDPRKFHYSCVPCPDFRKGACRRGDMCEYAHGVFECWLHPAQYRTRLCKDGTSCNRRVCFFAHTAEELRPLYVSTGSAVPSPRSSASTPNVMDMAAAMSLFPGSPSSISSMSPSPFAQPMSPSTSGISHSSNAWPQPNVPALHLPGSNIQTSRLRSSLSARDMPPEDFDVLQDFDGQQHLLSDLGCFSQPRPGAISVSRSGRSKTLTPSNLDELFSAEISSSPRYSDPAVASVFSPRHKSTIMNQFQQLQSSLSPINTSVSSPRNVEHPLLQASFGVSSPGRMSPRSMEPISPMSSRLSAFAQREKQHQQLRSLSSRDLGANVPASMVGSPVNSWSNWGSPHGNGKVDWSVNGNELGRLQRSSSFELGNNGEEPDLSWVQSLVKESPSEIKEKLTGSGPVASVDGPSSNPKSNPQVESVDHSVLGAWLEQMQLDQLVV*

>Glyma.09g102900.2.p sequence-type=predicted peptide transcript=Glyma.09g102900.2 locus=Glyma.09g102900 ID=Glyma.09g102900.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MKNLTVHTEDSFSCLLELASNNDFEDLKLALDRDASLINEVGLWYVRQIGSKQIVLQPRTPLMVAAMYGSIDVLKLLLSCPEADVNFSCGTDKSTALHCAALGGSVNAVDVVKLLLSAGADVSCVDANGNRPVDVLVVPPKLEGLKATLEDLLSDSTSVGSVGDCFIPVSVNSSCSDSAAHLSSPENGLPFSAMASKFADTAVNSASEKKEYPIDPSLPDIKNSIYATDEFRMFSFKVRPCSRAYSHDWTECPFVHPGENARRRDPRKFHYSCVPCPDFRKGACRRGDMCEYAHGVFECWLHPAQYRTRLCKDGTSCNRRVCFFAHTAEELRPLYVSTGSAVPSPRSSASTPNVMDMAAAMSLFPGSPSSISSMSPSPFAQPMSPSTSGISHSSNAWPQPNVPALHLPGSNIQTSRLRSSLSARDMPPEDFDVLQDFDGQQHLLSDLGCFSQPRPGAISVSRSGRSKTLTPSNLDELFSAEISSSPRYSDPAVASVFSPRHKSTIMNQFQQLQSSLSPINTSVSSPRNVEHPLLQASFGVSSPGRMSPRSMEPISPMSSRLSAFAQREKQHQQLRSLSSRDLGANVPASMVGSPVNSWSNWGSPHGNGKVDWSVNGNELGRLQRSSSFELGNNGEEPDLSWVQSLVKESPSEIKEKLTGSGPVASVDGPSSNPKSNPQVESVDHSVLGAWLEQMQLDQLVV*

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