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Report for Sequence Feature Glyma.09g085300

Feature Type:gene_model
Chromosome:Gm09
Start:10434779
stop:10468002
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.09g085300
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G30450.1AT cation-chloride co-transporter 1 JGI N/AIEA
GO:0006810GO-bp transport JGI N/AIEA
GO:0006811GO-bp ion transport EnsemblGenomesN/AIEA
GO:0055085GO-bp transmembrane transport EnsemblGenomesN/AIEA
GO:0055085GO-bp transmembrane transport JGI N/AIEA
GO:0071805GO-bp potassium ion transmembrane transport EnsemblGenomesN/AIEA
GO:1902476GO-bp chloride transmembrane transport EnsemblGenomesN/AIEA
GO:0016020GO-cc membrane EnsemblGenomesN/AIEA
GO:0016020GO-cc membrane JGI N/AIEA
GO:0016021GO-cc integral component of membrane EnsemblGenomesN/AIEA
GO:0005215GO-mf transporter activity EnsemblGenomesN/AIEA
GO:0015377GO-mf cation:chloride symporter activity EnsemblGenomesN/AIEA
GO:0015379GO-mf potassium:chloride symporter activity EnsemblGenomesN/AIEA
KOG2082 KOG K+/Cl- cotransporter KCC1 and related transporters JGI N/AIEA
PTHR11827Panther SOLUTE CARRIER FAMILY 12, CATION COTRANSPORTERS JGI N/AIEA
PTHR11827:SF19Panther JGI N/AIEA
PF00324PFAM Amino acid permease JGI N/AIEA

Expression Patterns of Glyma.09g085300
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.09g085300 not represented in the dataset
Glyma.09g085300 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.09g085300
ParalogEvidenceComments
Glyma.15g193400 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.09g085300 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma09g10415 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.09g085300
>Glyma.09g085300.1 sequence-type=CDS polypeptide=Glyma.09g085300.1.p locus=Glyma.09g085300 ID=Glyma.09g085300.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGATCGAGAAAATGGCGACGGCGACATTGAAGGCGGTGGTGGCGCCGACGACGGTGGTTTTCGCTCTCCGATTGGTCGCAAGTACCACCCTGTCTTGGCCAACGATCGCGCGGTGCTCGAAATGTCCTCCATGGATCAGGGACCTTCTTCTTCCTCTTCCGCATTTCCAGATCAGCATCCTAATATCAGAAAAGTAAATACAAGTGTGAATGGTAGTTCGGATGCTAAAGAAGAGAACCCTTCTCATGAAAACCAACCTAATGGATCCCTGCAGCAGGAATCTAAACTGGAATTGTTTGGTTTTGATTCTCTTGTCAACATTCTTGGTCTCAAAAGTATGACTGGTGAGCATGTTGCACAACCATCTAGTCCTAGAGATGGTGAGGATATTTCCATCACAGCTGGCTTGCCAAAGCCTGCTGCTCCTAAACTGGGTACGCTGATGGGTGTGTTTATTCCATGTTTACAAAGCATTTTGGGCATCATCTACTACATTCGTTTCTCTTGGATTGTTGGTATGGCTGGCATAGGAGAGACATTGCTGCTTGTTTCTTTATGTGGCACTTGTACATTCCTTACTTCAATATCATTGAGTGCTATTGCAACCAATGGAGCCATGAAGGGTGGGGGACCTTACTATCTCATAGGCCGTGCCCTTGGTCCTGAAGTTGGAGTTAGCATTGGTCTATGCTTTTTCCTGGGAAATGCTGTTGCCGGAGCACTTTATATATTGGGAGCTGTAGAAACATTTTTGAAAGCAGTTCCTTCTGCTGGGATTTTTAGAGAGACTATCACTCAAGTTAATGGTACTGCAATTGCACGACCAATACAGAGTCCAAGTTCACATGACCTGCAGATATATGGGATTGTTTTGACTATTCTGTTATGCTTTATTGTATTTGGAGGAGTGAAGATGATAAATCGGGTTGCACCTGCTTTTCTCATACCTGTTTTATTCTCAGTCGTCTGCATATTTTTGGGAATATTTTTGGCAGGGAAGGATCATCCTTCAGAGGGAATTACTGGGTTGAGTTCGGATACATTTAAAGAAAATTGGAGTTCAGATTATCAAAGGACTAACAATGCTGGAATTCCAGAAACTGATGGCTCGGTAACCTGGAATTTCAATTCATTGGTAGGCCTCTTTTTCCCTGCTGTAACGGGAATAATGGCAGGCTCTAATCGATCATCCTCTCTGAGAGATACTCAGCGATCAATTCCTGTTGGAACTTTAGCTGCAACTCTTACAACTACTTTTCTGTATCTTGTTTCTTTGATGTTATTTGGCGCTGTTGCCACCAGAGAGAAGCTTTTAACTGACAGGCTACTTACAGCTACAATTGCCTGGCCTTTTCCTTCATTAATTAAAATTGGAATTATTCTTTCAACTATGGGTGCTGCTCTTCAGAGCCTGACTGGTGCCCCACGTCTGCTTGCAGCAATAGCCAATGATGATATTTTACCTATTTTGAACTACTTTAAAGTTGGAGATGCCAGTGAACCACATGTTGCTACCTTTTTTACTGCTTTCTTATGCATTGGGTGTGTCGTTATTGGGAATCTGGATCTTATCACTCCAACTGTAACTATGTTTTTCCTTCTATGTTACACTGGTGTCAACTTATCCTGCTTCCTTCTCGATCTTCTAGATGCCCCTAGTTGGCGTCCTCGGTGGAAATTTCACCATTGGAGTCTGTCCCTTGTGGGAGCATTACTTTGCATAGTGATCATGTTCCTAATCTCTTGGTCATTCACTGTGGTGTCTTTGCTCCTTGCAAGCCTCATATATAAGTACGTGAGCATTCAAGGAAAGGCTGGGGACTGGGGAGATGGTTTCAAAAGTGCTTATTTCCAACTAGCACTTCGTAGCCTTCGGTCCCTAGGAGCAAGCCAAGTGCACCCGAAGAATTGGTATCCAATTCCACTTGTATTTTGCCGACCCTGGGGCAAACTGCCAGAAAATGTTCCCTGTCATCCCAAACTTGCAGATTTTGCTAACTGTATGAAGAAGAAAGGTCGAGGAATGTCCATATTTGTCTCTATACTAGATGGGGATTACCATGAATGTGCTGAAGATGCCAAGACTGCTTGCAAACAACTTAGCACCTACATAGATTACAAAAATTGTGAAGGTGTGGCTGAGATAGTTGTTGCCCCTAACATGTCTGAAGGCTTCCGTGGCATAATTCAGACAATGGGCCTTGGCAATCTCAAGCCGAACATTGTGGTGATGCGTTACCCAGAAATTTGGCGGAGGGAAAACTTGATAGAAATCCCTGCTACCTTTGTTGGGATAATTAATGATTGCATTGTTGCAAACAAGGCTGTGGTTATAGTTAAGGGTCTTGATGAGTGGCCAAATGAGTACCAGAGGCAGTATGGCACAATTGATTTGTATTGGATTGTAAGAGATGGTGGTCTCATGCTGCTTCTTTCTCAGCTCCTTCTTACCAAGGAGAGCTTTGAGAATTGCAAGATTCAGGTCTTTTGTATCGCAGAAGACGATGCAGATGCTGAGGGGCTGAAAGCTGATGTGAAAAAATTCCTTTACGATCTTCGGATGCAAGCGGAAGTCTTTGTCATAACAATGAAATGGGATGCACAGATGGATGGTGGTGGCGGGTCCCCGGCACAAGATGAGTCAATGGATGCATTTACTAGTGCTCAACAAAGAATTGATAATTACTTAACCCAAATGAAGGCGACAGCAGAGAGAGAAGGTACTCCTCTAATGGCAGATGGCAAGCCCGTGGTTGTGAATGAGAAGCAGGTTGAGAAGTTTCTTTATACGACGCTTAAGCTCAATTCGACAATTTTGAGATACTCGAGAATGGCTGCTGTTGTGTTGGTGAGTCTTCCTCCACCTCCAGTGAGCCACCCAGCATATTTCTATATGGAGTACATGGATCTGTTGCTGGAGAAAATACCAAGGATTTTGATTGTAAGAGGATATCGTAAAGACGTTGTAACTCTATTTACATAG
Predicted protein sequences of Glyma.09g085300
>Glyma.09g085300.1.p sequence-type=predicted peptide transcript=Glyma.09g085300.1 locus=Glyma.09g085300 ID=Glyma.09g085300.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MDRENGDGDIEGGGGADDGGFRSPIGRKYHPVLANDRAVLEMSSMDQGPSSSSSAFPDQHPNIRKVNTSVNGSSDAKEENPSHENQPNGSLQQESKLELFGFDSLVNILGLKSMTGEHVAQPSSPRDGEDISITAGLPKPAAPKLGTLMGVFIPCLQSILGIIYYIRFSWIVGMAGIGETLLLVSLCGTCTFLTSISLSAIATNGAMKGGGPYYLIGRALGPEVGVSIGLCFFLGNAVAGALYILGAVETFLKAVPSAGIFRETITQVNGTAIARPIQSPSSHDLQIYGIVLTILLCFIVFGGVKMINRVAPAFLIPVLFSVVCIFLGIFLAGKDHPSEGITGLSSDTFKENWSSDYQRTNNAGIPETDGSVTWNFNSLVGLFFPAVTGIMAGSNRSSSLRDTQRSIPVGTLAATLTTTFLYLVSLMLFGAVATREKLLTDRLLTATIAWPFPSLIKIGIILSTMGAALQSLTGAPRLLAAIANDDILPILNYFKVGDASEPHVATFFTAFLCIGCVVIGNLDLITPTVTMFFLLCYTGVNLSCFLLDLLDAPSWRPRWKFHHWSLSLVGALLCIVIMFLISWSFTVVSLLLASLIYKYVSIQGKAGDWGDGFKSAYFQLALRSLRSLGASQVHPKNWYPIPLVFCRPWGKLPENVPCHPKLADFANCMKKKGRGMSIFVSILDGDYHECAEDAKTACKQLSTYIDYKNCEGVAEIVVAPNMSEGFRGIIQTMGLGNLKPNIVVMRYPEIWRRENLIEIPATFVGIINDCIVANKAVVIVKGLDEWPNEYQRQYGTIDLYWIVRDGGLMLLLSQLLLTKESFENCKIQVFCIAEDDADAEGLKADVKKFLYDLRMQAEVFVITMKWDAQMDGGGGSPAQDESMDAFTSAQQRIDNYLTQMKATAEREGTPLMADGKPVVVNEKQVEKFLYTTLKLNSTILRYSRMAAVVLVSLPPPPVSHPAYFYMEYMDLLLEKIPRILIVRGYRKDVVTLFT*






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