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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A previous version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G15440.1 | AT | periodic tryptophan protein 2 | JGI | N/A | IEA |
| GO:0000028 | GO-bp | ribosomal small subunit assembly | EnsemblGenomes | N/A | IEA |
| GO:0000462 | GO-bp | maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | EnsemblGenomes | N/A | IEA |
| GO:0032040 | GO-cc | small-subunit processome | EnsemblGenomes | N/A | IEA |
| GO:0034388 | GO-cc | Pwp2p-containing subcomplex of 90S preribosome | EnsemblGenomes | N/A | IEA |
| GO:0005515 | GO-mf | protein binding | EnsemblGenomes | N/A | IEA |
| GO:0005515 | GO-mf | protein binding | JGI | N/A | IEA |
| GO:0030515 | GO-mf | snoRNA binding | EnsemblGenomes | N/A | IEA |
| KOG0291 | KOG | WD40-repeat-containing subunit of the 18S rRNA processing complex | JGI | N/A | IEA |
| PTHR19858 | Panther | WD40 REPEAT PROTEIN | JGI | N/A | IEA |
| PF00400 | PFAM | WD domain, G-beta repeat | JGI | N/A | IEA |
| PF04003 | PFAM | Dip2/Utp12 Family | JGI | N/A | IEA |
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Glyma.09g084600 not represented in the dataset |
Glyma.09g084600 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.
Gene information in GlycineMine developed by LIS.
Gene families from PhyloGenes.
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma.15g193000 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma09g10290 | Wm82.a1.v1.1 | IGC | As supplied by JGI |
>Glyma.09g084600.1 sequence-type=CDS polypeptide=Glyma.09g084600.1.p locus=Glyma.09g084600 ID=Glyma.09g084600.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGAACTTCCGGTTCCAAAACCTCTTGGGCGCCCCCTACAGAGGGGGCAACGTGGTCATTTCCAGCAACACCGTGCTACTCTCCCCGGTCGGTAACCGCGTAGCCGTCACCGACCTCCTCAAGTCCGAAACCACCACGCTCCCCCTCCAGTCCTCCTCTAACGTCACCCGCATCACCGTCTCCCCCGACGCCACCTTCCTCCTCGCCATCGACGACCGCAACCGCTGCCTCTTCATCAACCTCCGCCGACGCGCCCTCCTCCACCGCATCACCTTCAAGCACCGCGTCGCCGCCTCGAAGTTCAGCCCCGACGGCGCCCTCATCGCCGTCGCCGCCGGGAAGCTCGTCCAGATCTGGCGTTCGCCGGCGTTTCGCCGCGAGTACTTCCCCTTTGAGCTCGTTCGGACCTTTGCGGACTTCGACGCGAAGGTCACCTCCCTCGATTGGAGCCCCGATTCGAAGTATCTTATCGCCGGGTCCAAGGATTTGACCGCGAGAATCTTGTGCTTGAAAAAATTGAACAGTGGTGGTGTTAAGAAAAGACCTTTTTTGCTATTAGGGCATAGGGATTCTGTTGTAGGTTCGTTTTTCGGTGTCAATTCGAAGACTAATAGGGTTTGTAAGGCTTATACGGTTAGTAGGGATTGTTATTTGTTTAGCTGGGGTTTTACTTCTGATGATGATGGTGAGGGTGAGGAAGATGGTGGTGAGGGTTTGGAACCTCCCTCGCCGGGGACGCCAGAGAGGGATGTGGAAGAGAATTTTGAGCTTAGTGAGAATGATGGTGTGAAGAAAATGAAGAAAATTAGTGAGAATGATGGTGTGAAGAAAAGAAAGAAAATTGATATTGAGGATGGTGATGAGGGTTACTTGAGTAGAGGGAAGTGGGAGTTATTGAGGAAGGATGGGTTTATGCAGGGATGGGCGAAGGTGACGGCGTGTGATTATCATAGAGGGCTGGATATGGTGGTTGTTGGATTTTCTAATGGTGTGTTTGGGTTGTATCAGATGCCGGATTTTGTGTGCATTCATTTGTTGTCTATTTCGAGGGAGAAGATTACCACTGCCGTGTTTAATGAGTTTGGCAACTGGTTGACCTTTGGCTGTGCCAAATTGGGACAGCTGCTTGTGTGGGAGTGGAGGTCTGAGAGCTACATTTTGAAGCAGCAGGGTCACTACTTTGATGTGAACTGCGTTGCGTATTCACCGGACTCGCAGCTCCTTGCAACTGGAGCAGATGATAATAAAGTGAAGGTGTGGACTCTTTCCTCAGGCTTTTGCTTTGTTACATTTTCTGAGCACACTAATGCTGTTACGGCTCTACATTTTATGCCAAGTAACAATGTCCTGCTTAGTGCATCTCTTGATGGGACCATTCGTGCATGGGACTTATTACGTTACCGGAATTTTAAGACGTTTACAACCCCTTCTCCAAGGCAGTTTGTTTCTTTGACAGCTGATATAAGTGGTGAAGTAATATGTGCTGGCACTTCAGATTCCTTTGAGGTTTTTGTTTGGTCAATGAAAACGGGGCGCTTGATGGATGTGCTTAGTGGTCATGAAGCTCCTGTCCATGGTCTGGTGTTTTCTCCTACGAATGCTGTCTTGGCTTCATCATCATATGACAAAACTGTTCGGCTGTGGAATGTCTTTGATGGAAAAGGAGCAGTTGAAACGTTTCCTCACACACACGATGTTCTTACTGTAGTTTATCGTCCAGATGGAAGGCAGTTAGCTTGCAGCACATTAGATGGGCAAATTCATTTTTGGGACCCAATAGATGGTTTGCTAATGTACACCATAGAAGGTTCTAGAGATATAGCTGGTGGGCGCCTTATGACTGACCGCAGATCAGCTGCTAACTCAACTTCAGGGAAGTTCTTTACAACCTTGTGTTTTTCAGCTGATGGAAGCTATATATTAGCTGGGGGAAGTAGCAGATACATCTGCATGTATGATGTTGCAGATCAGGTTTTGCTTCGACGTTTCCAGATAACTCACAATCTCTCATTAGATGGAGTGCTTGACATTTTAAACTCAAAGAATATGACAGAAGCTGGCCCACTAGATTTGATTGATGATGACAGCAGTGACATTGAAGAAGGTGTTGACAAACAAACACGAGGGAAGCTAGGATTAGACTTGCCAGGATCTATGCCTAACCGTGGAAGGCCTATTATTCAGACAAAAAGCCTGAGAATTGCATCTACAGGGCGTAGTTTTGTTGCAGCAACAACTGAGGGAGTTTTGGTTTATTCTGTTGATGAATCATTCATATTTGATCCAACTGACCTAGACATAAATGTTACACCAGAGGCTGTTGAAGAGGCTCTCCGGGAAAATCAACCAAGTAAAGCCTTGATCCTTAGCCTTCGCCTGAATGAGGATTCTTTCGTTAAAAAATGTATATTTGCGGTTAGTCCAGCAGATATTCCAGCCGTTGCCACATCAATCCCCTACAAATATATCCAGCGATTAGTTGAGGCACTTGCAGATCTTTTAGAAAACTGCCCACATTTGGAATTTATACTTAGATGGTCTCAGGAGCTCTGCAAAGCCCATGGGAATTCTATTCAGCAGAACTCTAGAAATCTGTTACCATCATTAAAATCTTTGCAGAAAGCAATCACTAGAATTCATCAAGATCTAGCAGATACATGTTCCTCCAATGAATATATGCTGCGATATTTATGTTCTTCTGGTGCCAAGAAATGA
>Glyma.09g084600.1.p sequence-type=predicted peptide transcript=Glyma.09g084600.1 locus=Glyma.09g084600 ID=Glyma.09g084600.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 MNFRFQNLLGAPYRGGNVVISSNTVLLSPVGNRVAVTDLLKSETTTLPLQSSSNVTRITVSPDATFLLAIDDRNRCLFINLRRRALLHRITFKHRVAASKFSPDGALIAVAAGKLVQIWRSPAFRREYFPFELVRTFADFDAKVTSLDWSPDSKYLIAGSKDLTARILCLKKLNSGGVKKRPFLLLGHRDSVVGSFFGVNSKTNRVCKAYTVSRDCYLFSWGFTSDDDGEGEEDGGEGLEPPSPGTPERDVEENFELSENDGVKKMKKISENDGVKKRKKIDIEDGDEGYLSRGKWELLRKDGFMQGWAKVTACDYHRGLDMVVVGFSNGVFGLYQMPDFVCIHLLSISREKITTAVFNEFGNWLTFGCAKLGQLLVWEWRSESYILKQQGHYFDVNCVAYSPDSQLLATGADDNKVKVWTLSSGFCFVTFSEHTNAVTALHFMPSNNVLLSASLDGTIRAWDLLRYRNFKTFTTPSPRQFVSLTADISGEVICAGTSDSFEVFVWSMKTGRLMDVLSGHEAPVHGLVFSPTNAVLASSSYDKTVRLWNVFDGKGAVETFPHTHDVLTVVYRPDGRQLACSTLDGQIHFWDPIDGLLMYTIEGSRDIAGGRLMTDRRSAANSTSGKFFTTLCFSADGSYILAGGSSRYICMYDVADQVLLRRFQITHNLSLDGVLDILNSKNMTEAGPLDLIDDDSSDIEEGVDKQTRGKLGLDLPGSMPNRGRPIIQTKSLRIASTGRSFVAATTEGVLVYSVDESFIFDPTDLDINVTPEAVEEALRENQPSKALILSLRLNEDSFVKKCIFAVSPADIPAVATSIPYKYIQRLVEALADLLENCPHLEFILRWSQELCKAHGNSIQQNSRNLLPSLKSLQKAITRIHQDLADTCSSNEYMLRYLCSSGAKK*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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