SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research


Warning: get_headers(): php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1018

Warning: get_headers(https://bar.utoronto.ca/api/efp_image/efp_soybean/soybean/Absolute/Glyma.09g072100): Failed to open stream: php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1018

Warning: Trying to access array offset on false in /var/www/html/include/SeqFeatClass.php on line 1019

Warning: get_headers(): php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1020

Warning: get_headers(https://bar.utoronto.ca/api/efp_image/efp_soybean/soybean_severin/Absolute/Glyma.09g072100): Failed to open stream: php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1020

Warning: Trying to access array offset on false in /var/www/html/include/SeqFeatClass.php on line 1021

Deprecated: preg_match(): Passing null to parameter #2 ($subject) of type string is deprecated in /var/www/html/include/SeqFeatClass.php on line 1025

Deprecated: preg_match(): Passing null to parameter #2 ($subject) of type string is deprecated in /var/www/html/include/SeqFeatClass.php on line 1031

Report for Sequence Feature Glyma.09g072100

Feature Type:gene_model
Chromosome:Gm09
Start:7463768
stop:7467295
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.09g072100
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G20720.1AT chaperonin 20 JGI N/AIEA
GO:0006457GO-bp protein folding EnsemblGenomesN/AIEA
GO:0006457GO-bp protein folding JGI N/AIEA
GO:0006986GO-bp response to unfolded protein EnsemblGenomesN/AIEA
GO:0051085GO-bp chaperone cofactor-dependent protein refolding EnsemblGenomesN/AIEA
GO:1901671GO-bp positive regulation of superoxide dismutase activity EnsemblGenomesN/AIEA
GO:0005737GO-cc cytoplasm EnsemblGenomesN/AIEA
GO:0005737GO-cc cytoplasm JGI N/AIEA
GO:0005759GO-cc mitochondrial matrix EnsemblGenomesN/AIEA
GO:0009507GO-cc chloroplast EnsemblGenomesN/AIEA
GO:0005524GO-mf ATP binding EnsemblGenomesN/AIEA
GO:0046872GO-mf metal ion binding EnsemblGenomesN/AIEA
GO:0046914GO-mf transition metal ion binding EnsemblGenomesN/AIEA
GO:0051082GO-mf unfolded protein binding EnsemblGenomesN/AIEA
GO:0051087GO-mf chaperone binding EnsemblGenomesN/AIEA
KOG1641 KOG Mitochondrial chaperonin JGI N/AIEA
PTHR10772Panther 10 KDA HEAT SHOCK PROTEIN JGI N/AIEA
PTHR10772:SF0Panther 20 KDA CHAPERONIN, CHLOROPLASTIC JGI N/AIEA
PF00166PFAM Chaperonin 10 Kd subunit JGI N/AIEA

Expression Patterns of Glyma.09g072100
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.09g072100 not represented in the dataset
Glyma.09g072100 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.09g072100
ParalogEvidenceComments
Glyma.15g180900 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.09g072100 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma09g08340 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.09g072100
>Glyma.09g072100.2 sequence-type=transcript locus=Glyma.09g072100 ID=Glyma.09g072100.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGCGCGTGAGCAACATAGAAACACTATCCTCTGCTCACGAGTGCACTAGTTCGTTCTAGAAGGCTCTATTATCATCAGATAAAACCCCCCCTATCTCTATTTTAGGGTTTTTATTATCTTCATTTCATCGTTTCGTTACGTTCTGCTTCGCGTGGACCAACAAGAAGTGTAAGTTTTCATTCAATGGCCAGCGCTCAGCTCTCAGCAATATCTTCGTCGATCTCTACGGCGTCGTTTGAAGGGCTTCGACCTTCGGCTGTTCAGTTTGCTTCCGCGGGCAGAATTAGAATTGGCAATCTCTCCCAAAGGTCTTTCCGGGGCTTGGTTGTCAAAGCCGCCACCGTTGTTGCCCCCAAATACACCGCGATTAAGCCTCTGGGAGACAGAGTGCTGATAAAAATTAAGGAAGCAGAGGAGAAAACTGAGGGTGGGATTTTGCTTCCATCAACTGCTCAAACGAAGCCTCAAGGGGGTGAGGTGGTTGCTGTTGGAGAAGGAAAGACAATTGGGAAGAACAATGTAGAGATTAGTGTGAAGACTGGTGCACAAGTTGTGTATTCGAAGTATGCAGGTACTGAGGTGGATTTCGATGGTACAAAGCATCTTATTGTGAAGGATGATGACATTGTTGGTATCCTTGAAACTGATGACATCAAGGATCTTAAACCCTTGAATGATAGAGTCCTCATAAAGGTTGCTGAAGCTGAGGAAAAAACCTCTGGCGGTTTGTTGCTTACAGAGGCAACCAAGGACAAACCTTCGATTGGAACAGTAAGCATTCATCATAGTTGTCTTCAGTTCGAAATGATAGTGTAGCCAATATAAATAATTAAGAGGATCATGTCCaggcttaatatttttgaaattttggtttttaatcttgctgagtgacattgtgcgattcatgtaattgacctcacctaatggagtagggctttgctgttgtctttgttgtAATGTTTTTGTAATACTTGGTATGCTACAGGTGATAGCGGTTGGGCCGGGGCATCTGGACGAGGAAGGCAACAGAAAACCTTTGTCCGTGACTCCTGGGAACACAGTTTTGTACTCCAAATATGCTGGAAATGACTTCAAGGGCAAAGATGGTTCTGACTATATTACCTTGAGAGTCTCAGATGTCATGGCTGTTCTCTCCTAGAACAACTTGCTTTGGGTTTTGTAACTTGAAATTTTTGTGTTTATCTCGAGAAAACGTGGATTCTTTTAATCGTAAGGACTTTTGAAAAATAGTTTATTGCAATCTGTTCCGTAGACAATCTCTTTTTATCTTTGAATTTGGTAGCCTGTGTTGAAATAAGTTCCGCAATATCTTTGAACATTTTCTTAATTATTAAATGCAATTATATTCCTAGAAGATGAAATATACTCGATTTATTTTATTGCTT
Coding sequences of Glyma.09g072100
>Glyma.09g072100.1 sequence-type=CDS polypeptide=Glyma.09g072100.1.p locus=Glyma.09g072100 ID=Glyma.09g072100.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCCAGCGCTCAGCTCTCAGCAATATCTTCGTCGATCTCTACGGCGTCGTTTGAAGGGCTTCGACCTTCGGCTGTTCAGTTTGCTTCCGCGGGCAGAATTAGAATTGGCAATCTCTCCCAAAGGTCTTTCCGGGGCTTGGTTGTCAAAGCCGCCACCGTTGTTGCCCCCAAATACACCGCGATTAAGCCTCTGGGAGACAGAGTGCTGATAAAAATTAAGGAAGCAGAGGAGAAAACTGAGGGTGGGATTTTGCTTCCATCAACTGCTCAAACGAAGCCTCAAGGGGGTGAGGTGGTTGCTGTTGGAGAAGGAAAGACAATTGGGAAGAACAATGTAGAGATTAGTGTGAAGACTGGTGCACAAGTTGTGTATTCGAAGTATGCAGGTACTGAGGTGGATTTCGATGGTACAAAGCATCTTATTGTGAAGGATGATGACATTGTTGGTATCCTTGAAACTGATGACATCAAGGATCTTAAACCCTTGAATGATAGAGTCCTCATAAAGGTTGCTGAAGCTGAGGAAAAAACCTCTGGCGGTTTGTTGCTTACAGAGGCAACCAAGGACAAACCTTCGATTGGAACAGTGATAGCGGTTGGGCCGGGGCATCTGGACGAGGAAGGCAACAGAAAACCTTTGTCCGTGACTCCTGGGAACACAGTTTTGTACTCCAAATATGCTGGAAATGACTTCAAGGGCAAAGATGGTTCTGACTATATTACCTTGAGAGTCTCAGATGTCATGGCTGTTCTCTCCTAG

>Glyma.09g072100.2 sequence-type=CDS polypeptide=Glyma.09g072100.2.p locus=Glyma.09g072100 ID=Glyma.09g072100.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCCAGCGCTCAGCTCTCAGCAATATCTTCGTCGATCTCTACGGCGTCGTTTGAAGGGCTTCGACCTTCGGCTGTTCAGTTTGCTTCCGCGGGCAGAATTAGAATTGGCAATCTCTCCCAAAGGTCTTTCCGGGGCTTGGTTGTCAAAGCCGCCACCGTTGTTGCCCCCAAATACACCGCGATTAAGCCTCTGGGAGACAGAGTGCTGATAAAAATTAAGGAAGCAGAGGAGAAAACTGAGGGTGGGATTTTGCTTCCATCAACTGCTCAAACGAAGCCTCAAGGGGGTGAGGTGGTTGCTGTTGGAGAAGGAAAGACAATTGGGAAGAACAATGTAGAGATTAGTGTGAAGACTGGTGCACAAGTTGTGTATTCGAAGTATGCAGGTACTGAGGTGGATTTCGATGGTACAAAGCATCTTATTGTGAAGGATGATGACATTGTTGGTATCCTTGAAACTGATGACATCAAGGATCTTAAACCCTTGAATGATAGAGTCCTCATAAAGGTTGCTGAAGCTGAGGAAAAAACCTCTGGCGGTTTGTTGCTTACAGAGGCAACCAAGGACAAACCTTCGATTGGAACAGTAAGCATTCATCATAGTTGTCTTCAGTTCGAAATGATAGTGTAG
Predicted protein sequences of Glyma.09g072100
>Glyma.09g072100.1.p sequence-type=predicted peptide transcript=Glyma.09g072100.1 locus=Glyma.09g072100 ID=Glyma.09g072100.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MASAQLSAISSSISTASFEGLRPSAVQFASAGRIRIGNLSQRSFRGLVVKAATVVAPKYTAIKPLGDRVLIKIKEAEEKTEGGILLPSTAQTKPQGGEVVAVGEGKTIGKNNVEISVKTGAQVVYSKYAGTEVDFDGTKHLIVKDDDIVGILETDDIKDLKPLNDRVLIKVAEAEEKTSGGLLLTEATKDKPSIGTVIAVGPGHLDEEGNRKPLSVTPGNTVLYSKYAGNDFKGKDGSDYITLRVSDVMAVLS*

>Glyma.09g072100.2.p sequence-type=predicted peptide transcript=Glyma.09g072100.2 locus=Glyma.09g072100 ID=Glyma.09g072100.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MASAQLSAISSSISTASFEGLRPSAVQFASAGRIRIGNLSQRSFRGLVVKAATVVAPKYTAIKPLGDRVLIKIKEAEEKTEGGILLPSTAQTKPQGGEVVAVGEGKTIGKNNVEISVKTGAQVVYSKYAGTEVDFDGTKHLIVKDDDIVGILETDDIKDLKPLNDRVLIKVAEAEEKTSGGLLLTEATKDKPSIGTVSIHHSCLQFEMIV*






Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
USDA Logo
Iowa State University Logo