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Report for Sequence Feature Glyma.09g069600

Feature Type:gene_model
Chromosome:Gm09
Start:7077838
stop:7080597
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.09g069600
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G77550.1AT tubulin-tyrosine ligases;tubulin-tyrosine ligases JGI N/AIEA
GO:0006464GO-bp cellular protein modification process EnsemblGenomesN/AIEA
GO:0006464GO-bp cellular protein modification process JGI N/AIEA
GO:0003824GO-mf catalytic activity EnsemblGenomesN/AIEA
GO:0005524GO-mf ATP binding EnsemblGenomesN/AIEA
PTHR12241Panther TUBULIN TYROSINE LIGASE-RELATED JGI N/AIEA
PTHR12241:SF13Panther TUBULIN--TYROSINE LIGASE-LIKE PROTEIN 12 JGI N/AIEA
PF03133PFAM Tubulin-tyrosine ligase family JGI N/AIEA

Expression Patterns of Glyma.09g069600
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.09g069600 not represented in the dataset
Glyma.09g069600 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.09g069600
ParalogEvidenceComments
Glyma.15g177600 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.09g069600 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma09g08080 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.09g069600
>Glyma.09g069600.1 sequence-type=CDS polypeptide=Glyma.09g069600.1.p locus=Glyma.09g069600 ID=Glyma.09g069600.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGATGAGCTAGGTTCAGCTTTGCGGCATAGTGATGAACCAAATTTCAGAGTGGCACCCTTTCTGTTCATGCCAAAAGGCAATCTATCATCAGCTGTGAGTTTTTCTATTCTATGGCCAACACAGAATGTTCAGAAAGGTGATAGGTGCACACGCGATTTTCTTCTTGGTATTGGGGAGGATAAACAACGTTCTGCCAGGCTTACAGCCTGGTTCCACACTCCAGAGAATTATCCATGTATTTCTCTTATTGCTAAGATAGCATATGAGAAGCACCATCAGAAATTGTTGTCCCCAAGCTTAATACCTCCCACCATTCAGTCTTCTGAGACTAGAAGTATTATTCATCAACCTGGTGGGCGTCCGTTACGTGTTTACACAAATATACCTCATGTAGAGGAATACTTGACACATCTGAAGTTTGCAATCAGCAAGTTTAATGCATGCAGGCTTGAACTTTATCTCAATTTTTTCTTTGTTCTTTCAAAGGAACCGAAAGATGCAGATATAGTATGGACAAGTGTGCAGGTAGATGAGGATATGAAGAAGGCCGTGGGAATTACAGAACAGCAATACATTAATCAATTTCCTTTTGAGGCAAGTCTTGTTATGAAGCATCATTTAGCAGAGACAATTCAGAAGGCACATGGATCTCCTCAATGGTTGCAGCCTACTTATAATCTTGAAACACACCTATCTCAACTTATTGGTGACTATTGTGTACGCAAAAAGGAAGGACTAGACAATCTTTGGATCTTGAAACCCTGGAACATGGCCCGAACTATTGATACCACTACTGGTCCAAAGATTTGTCAGAAGTATATTGAACAACCTGCTTTGTTCCAGGGGAGAAAGTTTGATCTCCGTTACATAGTACTGGTTCGGAGCATGCATCCTCTGGAGTTATTCCTGTCAGATTGTTTCTGGGCTAGGATAGCCAACAACCAATATTCTTTGGACAGAAGTAGTTTGTTTGAATATGAAACTCACTTCACTGTTATGAATTATCGCGGAACAATAAATCATAAGAATGCGAATGATTTTGTGAGGGAATTTGAGGAAGAACATCAAGTTAAATGGTTGGATATACACACAAGAGTAAGGAAAATGATTCGATCAGTGTTTGAGGCAGCTGCTGGCACTCATCCTGAGATGCAGAGTCCAACATCTCGGGCAATGTATGGTGTAGATGTCATGTTGGACAGCTCTTTTCAACCTAAGTTACTAGAGGTGACTTACTGCCCGGATTGTACAAGAGCTTGCAAATATGACATGGATATTGTGGTTGGAGAGGGAGGCGTTGCCAAAGCTAGTGATTTCTTCAACAATGTGTCTCTTTTTGAATGA
Predicted protein sequences of Glyma.09g069600
>Glyma.09g069600.1.p sequence-type=predicted peptide transcript=Glyma.09g069600.1 locus=Glyma.09g069600 ID=Glyma.09g069600.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MDELGSALRHSDEPNFRVAPFLFMPKGNLSSAVSFSILWPTQNVQKGDRCTRDFLLGIGEDKQRSARLTAWFHTPENYPCISLIAKIAYEKHHQKLLSPSLIPPTIQSSETRSIIHQPGGRPLRVYTNIPHVEEYLTHLKFAISKFNACRLELYLNFFFVLSKEPKDADIVWTSVQVDEDMKKAVGITEQQYINQFPFEASLVMKHHLAETIQKAHGSPQWLQPTYNLETHLSQLIGDYCVRKKEGLDNLWILKPWNMARTIDTTTGPKICQKYIEQPALFQGRKFDLRYIVLVRSMHPLELFLSDCFWARIANNQYSLDRSSLFEYETHFTVMNYRGTINHKNANDFVREFEEEHQVKWLDIHTRVRKMIRSVFEAAAGTHPEMQSPTSRAMYGVDVMLDSSFQPKLLEVTYCPDCTRACKYDMDIVVGEGGVAKASDFFNNVSLFE*






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