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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A previous version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G57020.1 | AT | myristoyl-CoA:protein N-myristoyltransferase | JGI | N/A | IEA |
| GO:0006499 | GO-bp | N-terminal protein myristoylation | EnsemblGenomes | N/A | IEA |
| GO:0018008 | GO-bp | N-terminal peptidyl-glycine N-myristoylation | EnsemblGenomes | N/A | IEA |
| GO:0005737 | GO-cc | cytoplasm | EnsemblGenomes | N/A | IEA |
| GO:0004379 | GO-mf | glycylpeptide N-tetradecanoyltransferase activity | EnsemblGenomes | N/A | IEA |
| GO:0004379 | GO-mf | glycylpeptide N-tetradecanoyltransferase activity | JGI | N/A | IEA |
| GO:0016740 | GO-mf | transferase activity | EnsemblGenomes | N/A | IEA |
| GO:0016746 | GO-mf | transferase activity, transferring acyl groups | EnsemblGenomes | N/A | IEA |
| KOG2779 | KOG | N-myristoyl transferase | JGI | N/A | IEA |
| PTHR11377 | Panther | N-MYRISTOYL TRANSFERASE | JGI | N/A | IEA |
| PF01233 | PFAM | Myristoyl-CoA:protein N-myristoyltransferase, N-terminal domain | JGI | N/A | IEA |
| PF02799 | PFAM | Myristoyl-CoA:protein N-myristoyltransferase, C-terminal domain | JGI | N/A | IEA |
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Glyma.09g065700 not represented in the dataset |
Glyma.09g065700 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.
Gene information in GlycineMine developed by LIS.
Gene families from PhyloGenes.
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma.15g171900 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma09g07540 | Wm82.a1.v1.1 | IGC | As supplied by JGI |
>Glyma.09g065700.1 sequence-type=CDS polypeptide=Glyma.09g065700.1.p locus=Glyma.09g065700 ID=Glyma.09g065700.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGGGTGATAGCAGTGTTCCATCTGGGTCTCCAAATGCAAAATCAGATCTTGTTGACAGAGACTTGGCGGTTTCCAACAACGCGTCGTCGTTGGAAACCATTGTGCAAAGTTTCCAAGATTCAATGTCTCTTGGTAAGAGACACAAGTTCTGGGAAACTCAGCCTGTGGGGCAATACAAGGATGTTGGGGACTCAAGTTTGCCCGAGGGCCCGATTGAGCCCCCGACACCTTTGTCCGAGGTTAAGCAGGAGCCTTACAACCTTCCCAGTGCTTATGAGTGGACAACATGTGACATGGACTCTGAGGAAATCTGTGATGAGGTTTATGCCCTTCTCAAGAATAACTATGTTGAGGATGATGAGAACATGTTCAGGTTCAACTATTCCAAGGAATTTCTCAGTTGGGCGTTGCGTGTTCCGGGCTATTACCAGAGTTGGCACATTGGCGTGAGAGCCAAGACGTCGAAGAAGTTGGTTGCTTTCATCAGTGGCATCCCCGCCAGGATCAGGGTTAATGAGGAGGTTGTGAAGATGGCCGAGATCAATTTCTTGTGTGTTCATAAGAAGCTCAGGTCAAAGAGACTTGCACCTGTTATGATCAAGGAGGTCACCAGGAGGGTTCATTTGGAGAATATTTGGCAGGCGGCCTATACGGCTGGAGTTGTTCTTCCAACGCCAATCACGACTTGTCAATATTGGCACCGATCGTTGAATCCGAAGAAGCTAATTGATGTTGGGTTTTCAAGGCTTGGTGCTAGGATGACGATGAGCCGCACTATAAAGCTTTACAAATTGCCTGATTCAACGGTTACTCCTGGATTCAGGAAAATGGAGCTTCGGGATGTCCCTGCTGTTACTCGGCTGCTTAGGAACTACTTGAGCCAGTTTGTTGTTGCACCTGATTTTGATGAAAATGATGTTGAACATTGGCTTCTTCCCAATGAGAATGTGGTGGATAGTTTCTTGGTGGAGAGTCCAGAGAATCATGAGATCACAGACTTCTGCAGCTTCTATACTCTTCCTTCTTCCATCCTTGGAAATCAAAATTACTCAATTTTGAAAGCTGCTTATTCTTATTATAATGTTTCCACCAAAACTCCGCTGACCCAGTTGATGAATGATGTGCTGATTGTAGCAAAGCAAAAGGATTTTGATGTTTTCAATGCCTTGGATGTAATGCACAATGAGAGTTTCCTCAAAGAACTCAAGTTTGGACCAGGAGATGGACAGCTTCACTACTACTTGTACAATTATAGGATTCGTAGTGCCTTGAAACCATCTGGACTTGGACTTGTGCTCTTGTAG
>Glyma.09g065700.1.p sequence-type=predicted peptide transcript=Glyma.09g065700.1 locus=Glyma.09g065700 ID=Glyma.09g065700.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 MGDSSVPSGSPNAKSDLVDRDLAVSNNASSLETIVQSFQDSMSLGKRHKFWETQPVGQYKDVGDSSLPEGPIEPPTPLSEVKQEPYNLPSAYEWTTCDMDSEEICDEVYALLKNNYVEDDENMFRFNYSKEFLSWALRVPGYYQSWHIGVRAKTSKKLVAFISGIPARIRVNEEVVKMAEINFLCVHKKLRSKRLAPVMIKEVTRRVHLENIWQAAYTAGVVLPTPITTCQYWHRSLNPKKLIDVGFSRLGARMTMSRTIKLYKLPDSTVTPGFRKMELRDVPAVTRLLRNYLSQFVVAPDFDENDVEHWLLPNENVVDSFLVESPENHEITDFCSFYTLPSSILGNQNYSILKAAYSYYNVSTKTPLTQLMNDVLIVAKQKDFDVFNALDVMHNESFLKELKFGPGDGQLHYYLYNYRIRSALKPSGLGLVLL*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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