Glyma.09g063100

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Warning: get_headers(): php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1018

Warning: get_headers(https://bar.utoronto.ca/api/efp_image/efp_soybean/soybean/Absolute/Glyma.09g063100): Failed to open stream: php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1018

Warning: Trying to access array offset on false in /var/www/html/include/SeqFeatClass.php on line 1019

Warning: get_headers(): php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1020

Warning: get_headers(https://bar.utoronto.ca/api/efp_image/efp_soybean/soybean_severin/Absolute/Glyma.09g063100): Failed to open stream: php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1020

Warning: Trying to access array offset on false in /var/www/html/include/SeqFeatClass.php on line 1021

Deprecated: preg_match(): Passing null to parameter #2 ($subject) of type string is deprecated in /var/www/html/include/SeqFeatClass.php on line 1025

Deprecated: preg_match(): Passing null to parameter #2 ($subject) of type string is deprecated in /var/www/html/include/SeqFeatClass.php on line 1031

Report for Sequence Feature Glyma.09g063100

Feature Type:	gene_model
Chromosome:	Gm09
Start:	6038797
stop:	6046431
Source:	JGI
Version:	Wm82.a2.v1
High confidence:	yes

A previous version of this gene model can be found here:

Annotations for Glyma.09g063100

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G19520.1	AT	Transducin family protein / WD-40 repeat family protein	JGI	N/A	IEA
GO:0005634	GO-cc	nucleus	EnsemblGenomes	N/A	IEA
GO:0005515	GO-mf	protein binding	EnsemblGenomes	N/A	IEA
GO:0005515	GO-mf	protein binding	JGI	N/A	IEA
KOG0264	KOG	Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1	JGI	N/A	IEA
PTHR22850	Panther	WD40 REPEAT FAMILY	JGI	N/A	IEA
PTHR22850:SF14	Panther		JGI	N/A	IEA
PF00400	PFAM	WD domain, G-beta repeat	JGI	N/A	IEA
PF12265	PFAM	Histone-binding protein RBBP4 or subunit C of CAF1 complex	JGI	N/A	IEA

Expression Patterns of Glyma.09g063100

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.09g063100 not represented in the dataset	Glyma.09g063100 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.

Gene information in GlycineMine developed by LIS.

Related Plant Genes

Gene families from PhyloGenes.

Paralogs of Glyma.09g063100

Paralog	Evidence	Comments
Glyma.15g169800	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.09g063100 Gene Call Version Wm82.a2.v1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma09g07120	Wm82.a1.v1.1	IGC	As supplied by JGI

Transcripts of Glyma.09g063100

Limit To All Plant Sequences

>Glyma.09g063100.2 sequence-type=transcript locus=Glyma.09g063100 ID=Glyma.09g063100.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ACTCGTGAGTGTGGAAGACGAAAAgagagttgagagagagtgagagggagtgagagggagCGAAGAGAAGAAACAAAGATGGAGACTCCTCCTCCCCAACAAGGCGTCGTGAAGAAGAAGGAGACAAGGGGCCGAAAACCCAAACCAAAGGACGAACACGGGAAGGGTTTGAAGGAAGGTAGGAAAACacaacaacaacaacaacaacaacaacaacatcatcatcagcagcagcaacagcaacaagatcaACCTTCGGTGGACGAGAAATACACGCAGTGGAAGTCCCTTGTTCCTGTCCTCTACGACTGGCTCGCCAACCACAACCTCGTCTGGCCCTCTCTCTCTTGCAGGTGGGGCCCCCAGCTTGAACAAGCCACTTACAAGAATCGCCAGAGACTCTACCTTTCTGAGCAGACTGATGGTAGTGTGCCGAATACTCTGGTGATTGCGAATTGCGAGGTTGTGAAGCCTAGGGTTGCTGCTGCTGAGCACATTTCGCAGTTTAATGAAGAGGCGCGGTCCCCATTTGTGAAGAAGTACAAGACCATCATACATCCTGGTGAGGTAAACAGAATTAGGGAATTGCCACAAAATTCCAAGATAGTGGCTACACATACAGACAGCCCTGATGTCCTTGTTTGGGATGTTGAAAGTCAACCTAATCGCCATGCTGTCCTTGGAGCTACAAACTCTCGTCCTGATTTGATATTGACCGGACACCAAGATAATGCGGAATTTGCTCTTGCTATGTGCCCAACTGAACCCTATGTTCTTTCAGGAGGAAAGGACAAAACAGTGGTGTTGTGGAGTATTGAAGACCATATAACATCTGCTGCTACAGACTCCAAATCTGGTGGGTCAATTATCAAACAAAACTCTAAATCTGGAGAAGGCAATGACAAAACTGCTGATGGCCCTACTGTTGGACCACGAGGTATCTATTGTGGGCATGAGGATACTGTTGAAGATGTGGCTTTCTGCCCATCTAGTGCACAGGAGTTCTGTAGTGTTGGAGATGATTCTTGTCTCATCTTATGGGATGCACGTGTTGGCTCTAGCCCTGTGGTTAAGGTTGAGAAAGCTCATAATGCTGATCTTCACTGTGTGGACTGGAATCCCCATGATGATAATCTGATTCTTACTGGGTCAGCAGATAATTCTGTTCGCATGTTTGATCGCCGCAATCTCACCACTAATGGAGTTGGGTCACCCATCCATAAATTTGAGGGTCACAAAGCTGCTGTTCTTTGTGTTCAGTGGTCTCCAGACAAATCATCTGTATTTGGAAGTTCAGCTGAAGATGGTCTCTTAAACATTTGGGACTATGAGAAGGTTGGTAAAAAGATAGAGCGATCTGGAAAATCAATAAGTTCTCCTCCAGGGTTGTTTTTTCAACATGCAGGTCATAGGGATAAAGTTGTTGACTTCCATTGGAATGCATATGATCCATGGACGATTGTTAGTGTGTCTGATGACTGTGAAAGTACTGGAGGAGGGGGAACGTTGCAGATTCTACTTTTGGAAAAACCTTGTAAGTGGCATGACCAAATTTGATGGTACAGTTGACATTAAACCTAATGAGAGACATGTATCCCCGAAAGATGACCCATTTATTAATATTCACAAAAACACATCCCTAAGAGCAACCAATCTCTTTCCTCTTCCAAGAACTGCACAAACATTTTCCAGGCTCATCCTGGTATTTTCACTCGATTGTGGAGTTTCTGGTTTTCGTATTGGATTTGAGGATGCTCAAGGTAGAGCAGATACATGACTGGCATGGGTGGGGACAGTGGCAAGACTGTTTCCTTTTCCTTTCTTTGGCGCAGTGGGGCTTTGGTGATGTGGACTATGCACTTGCAGATCAAGTTTTCTGTTATTTTGACATTTTTTTTTAATGTGAATGACTAAATCATGTACATCTGCCAAGTCAAA

Coding sequences of Glyma.09g063100

Limit To All Plant Sequences

>Glyma.09g063100.1 sequence-type=CDS polypeptide=Glyma.09g063100.1.p locus=Glyma.09g063100 ID=Glyma.09g063100.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGAGACTCCTCCTCCCCAACAAGGCGTCGTGAAGAAGAAGGAGACAAGGGGCCGAAAACCCAAACCAAAGGACGAACACGGGAAGGGTTTGAAGGAAGGTAGGAAAACACAACAACAACAACAACAACAACAACAACATCATCATCAGCAGCAGCAACAGCAACAAGATCAACCTTCGGTGGACGAGAAATACACGCAGTGGAAGTCCCTTGTTCCTGTCCTCTACGACTGGCTCGCCAACCACAACCTCGTCTGGCCCTCTCTCTCTTGCAGGTGGGGCCCCCAGCTTGAACAAGCCACTTACAAGAATCGCCAGAGACTCTACCTTTCTGAGCAGACTGATGGTAGTGTGCCGAATACTCTGGTGATTGCGAATTGCGAGGTTGTGAAGCCTAGGGTTGCTGCTGCTGAGCACATTTCGCAGTTTAATGAAGAGGCGCGGTCCCCATTTGTGAAGAAGTACAAGACCATCATACATCCTGGTGAGGTAAACAGAATTAGGGAATTGCCACAAAATTCCAAGATAGTGGCTACACATACAGACAGCCCTGATGTCCTTGTTTGGGATGTTGAAAGTCAACCTAATCGCCATGCTGTCCTTGGAGCTACAAACTCTCGTCCTGATTTGATATTGACCGGACACCAAGATAATGCGGAATTTGCTCTTGCTATGTGCCCAACTGAACCCTATGTTCTTTCAGGAGGAAAGGACAAAACAGTGGTGTTGTGGAGTATTGAAGACCATATAACATCTGCTGCTACAGACTCCAAATCTGGTGGGTCAATTATCAAACAAAACTCTAAATCTGGAGAAGGCAATGACAAAACTGCTGATGGCCCTACTGTTGGACCACGAGGTATCTATTGTGGGCATGAGGATACTGTTGAAGATGTGGCTTTCTGCCCATCTAGTGCACAGGAGTTCTGTAGTGTTGGAGATGATTCTTGTCTCATCTTATGGGATGCACGTGTTGGCTCTAGCCCTGTGGTTAAGGTTGAGAAAGCTCATAATGCTGATCTTCACTGTGTGGACTGGAATCCCCATGATGATAATCTGATTCTTACTGGGTCAGCAGATAATTCTGTTCGCATGTTTGATCGCCGCAATCTCACCACTAATGGAGTTGGGTCACCCATCCATAAATTTGAGGGTCACAAAGCTGCTGTTCTTTGTGTTCAGTGGTCTCCAGACAAATCATCTGTATTTGGAAGTTCAGCTGAAGATGGTCTCTTAAACATTTGGGACTATGAGAAGGTTGGTAAAAAGATAGAGCGATCTGGAAAATCAATAAGTTCTCCTCCAGGGTTGTTTTTTCAACATGCAGGTCATAGGGATAAAGTTGTTGACTTCCATTGGAATGCATATGATCCATGGACGATTGTTAGTGTGTCTGATGACTGTGAAAGTACTGGAGGAGGGGGAACGTTGCAGATATGGCGCATGAGTGATTTGATCTACAGACCAGAAGATGAGGTTTTGGCCGAGCTGGAGAAATTCAAATCTCATGTTGTGGCGTGTGCTTCAAAGACTGAAAAATGA

>Glyma.09g063100.2 sequence-type=CDS polypeptide=Glyma.09g063100.2.p locus=Glyma.09g063100 ID=Glyma.09g063100.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGAGACTCCTCCTCCCCAACAAGGCGTCGTGAAGAAGAAGGAGACAAGGGGCCGAAAACCCAAACCAAAGGACGAACACGGGAAGGGTTTGAAGGAAGGTAGGAAAACACAACAACAACAACAACAACAACAACAACATCATCATCAGCAGCAGCAACAGCAACAAGATCAACCTTCGGTGGACGAGAAATACACGCAGTGGAAGTCCCTTGTTCCTGTCCTCTACGACTGGCTCGCCAACCACAACCTCGTCTGGCCCTCTCTCTCTTGCAGGTGGGGCCCCCAGCTTGAACAAGCCACTTACAAGAATCGCCAGAGACTCTACCTTTCTGAGCAGACTGATGGTAGTGTGCCGAATACTCTGGTGATTGCGAATTGCGAGGTTGTGAAGCCTAGGGTTGCTGCTGCTGAGCACATTTCGCAGTTTAATGAAGAGGCGCGGTCCCCATTTGTGAAGAAGTACAAGACCATCATACATCCTGGTGAGGTAAACAGAATTAGGGAATTGCCACAAAATTCCAAGATAGTGGCTACACATACAGACAGCCCTGATGTCCTTGTTTGGGATGTTGAAAGTCAACCTAATCGCCATGCTGTCCTTGGAGCTACAAACTCTCGTCCTGATTTGATATTGACCGGACACCAAGATAATGCGGAATTTGCTCTTGCTATGTGCCCAACTGAACCCTATGTTCTTTCAGGAGGAAAGGACAAAACAGTGGTGTTGTGGAGTATTGAAGACCATATAACATCTGCTGCTACAGACTCCAAATCTGGTGGGTCAATTATCAAACAAAACTCTAAATCTGGAGAAGGCAATGACAAAACTGCTGATGGCCCTACTGTTGGACCACGAGGTATCTATTGTGGGCATGAGGATACTGTTGAAGATGTGGCTTTCTGCCCATCTAGTGCACAGGAGTTCTGTAGTGTTGGAGATGATTCTTGTCTCATCTTATGGGATGCACGTGTTGGCTCTAGCCCTGTGGTTAAGGTTGAGAAAGCTCATAATGCTGATCTTCACTGTGTGGACTGGAATCCCCATGATGATAATCTGATTCTTACTGGGTCAGCAGATAATTCTGTTCGCATGTTTGATCGCCGCAATCTCACCACTAATGGAGTTGGGTCACCCATCCATAAATTTGAGGGTCACAAAGCTGCTGTTCTTTGTGTTCAGTGGTCTCCAGACAAATCATCTGTATTTGGAAGTTCAGCTGAAGATGGTCTCTTAAACATTTGGGACTATGAGAAGGTTGGTAAAAAGATAGAGCGATCTGGAAAATCAATAAGTTCTCCTCCAGGGTTGTTTTTTCAACATGCAGGTCATAGGGATAAAGTTGTTGACTTCCATTGGAATGCATATGATCCATGGACGATTGTTAGTGTGTCTGATGACTGTGAAAGTACTGGAGGAGGGGGAACGTTGCAGATTCTACTTTTGGAAAAACCTTGTAAGTGGCATGACCAAATTTGA

Predicted protein sequences of Glyma.09g063100

Limit To All Plant Sequences

>Glyma.09g063100.1.p sequence-type=predicted peptide transcript=Glyma.09g063100.1 locus=Glyma.09g063100 ID=Glyma.09g063100.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
METPPPQQGVVKKKETRGRKPKPKDEHGKGLKEGRKTQQQQQQQQQHHHQQQQQQQDQPSVDEKYTQWKSLVPVLYDWLANHNLVWPSLSCRWGPQLEQATYKNRQRLYLSEQTDGSVPNTLVIANCEVVKPRVAAAEHISQFNEEARSPFVKKYKTIIHPGEVNRIRELPQNSKIVATHTDSPDVLVWDVESQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKTVVLWSIEDHITSAATDSKSGGSIIKQNSKSGEGNDKTADGPTVGPRGIYCGHEDTVEDVAFCPSSAQEFCSVGDDSCLILWDARVGSSPVVKVEKAHNADLHCVDWNPHDDNLILTGSADNSVRMFDRRNLTTNGVGSPIHKFEGHKAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKIERSGKSISSPPGLFFQHAGHRDKVVDFHWNAYDPWTIVSVSDDCESTGGGGTLQIWRMSDLIYRPEDEVLAELEKFKSHVVACASKTEK*

>Glyma.09g063100.2.p sequence-type=predicted peptide transcript=Glyma.09g063100.2 locus=Glyma.09g063100 ID=Glyma.09g063100.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
METPPPQQGVVKKKETRGRKPKPKDEHGKGLKEGRKTQQQQQQQQQHHHQQQQQQQDQPSVDEKYTQWKSLVPVLYDWLANHNLVWPSLSCRWGPQLEQATYKNRQRLYLSEQTDGSVPNTLVIANCEVVKPRVAAAEHISQFNEEARSPFVKKYKTIIHPGEVNRIRELPQNSKIVATHTDSPDVLVWDVESQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKTVVLWSIEDHITSAATDSKSGGSIIKQNSKSGEGNDKTADGPTVGPRGIYCGHEDTVEDVAFCPSSAQEFCSVGDDSCLILWDARVGSSPVVKVEKAHNADLHCVDWNPHDDNLILTGSADNSVRMFDRRNLTTNGVGSPIHKFEGHKAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKIERSGKSISSPPGLFFQHAGHRDKVVDFHWNAYDPWTIVSVSDDCESTGGGGTLQILLLEKPCKWHDQI*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain