Glyma.09g062900

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Report for Sequence Feature Glyma.09g062900

Feature Type:	gene_model
Chromosome:	Gm09
Start:	6004419
stop:	6011041
Source:	JGI
Version:	Wm82.a2.v1
High confidence:	yes

A previous version of this gene model can be found here:

Annotations for Glyma.09g062900

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G26140.1	AT	beta-galactosidase 12	JGI	N/A	IEA
GO:0005975	GO-bp	carbohydrate metabolic process	EnsemblGenomes	N/A	IEA
GO:0005975	GO-bp	carbohydrate metabolic process	JGI	N/A	IEA
GO:0008152	GO-bp	metabolic process	EnsemblGenomes	N/A	IEA
GO:0005618	GO-cc	cell wall	EnsemblGenomes	N/A	IEA
GO:0005773	GO-cc	vacuole	EnsemblGenomes	N/A	IEA
GO:0009341	GO-cc	beta-galactosidase complex	JGI	N/A	IEA
GO:0004553	GO-mf	hydrolase activity, hydrolyzing O-glycosyl compounds	EnsemblGenomes	N/A	IEA
GO:0004553	GO-mf	hydrolase activity, hydrolyzing O-glycosyl compounds	JGI	N/A	IEA
GO:0004565	GO-mf	beta-galactosidase activity	EnsemblGenomes	N/A	IEA
GO:0004565	GO-mf	beta-galactosidase activity	JGI	N/A	IEA
GO:0016787	GO-mf	hydrolase activity	EnsemblGenomes	N/A	IEA
GO:0016798	GO-mf	hydrolase activity, acting on glycosyl bonds	EnsemblGenomes	N/A	IEA
KOG0496	KOG	Beta-galactosidase	JGI	N/A	IEA
PTHR23421	Panther	BETA-GALACTOSIDASE RELATED	JGI	N/A	IEA
PTHR23421:SF33	Panther		JGI	N/A	IEA
PF01301	PFAM	Glycosyl hydrolases family 35	JGI	N/A	IEA
GN7V-67627	SoyCyc9-rxn	β-galactosidase	Plant Metabolic Network		ISS

Expression Patterns of Glyma.09g062900

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.09g062900 not represented in the dataset	Glyma.09g062900 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.

Gene information in GlycineMine developed by LIS.

Related Plant Genes

Gene families from PhyloGenes.

Paralogs of Glyma.09g062900

Paralog	Evidence	Comments
Glyma.15g169500	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.09g062900 Gene Call Version Wm82.a2.v1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma09g07100	Wm82.a1.v1.1	IGC	As supplied by JGI

Transcripts of Glyma.09g062900

Limit To All Plant Sequences

>Glyma.09g062900.2 sequence-type=transcript locus=Glyma.09g062900 ID=Glyma.09g062900.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
CCAGACTTCTTAATGGGCAATGTCTTGCAGTTGCAGTTGTTACGTGTGAAGGATGAGGACAGTGAAAAAAAAAGAATTAGAAAAAAAAGGGTCCCATTCTTCCCTCCTTTTCTTTCTTTCTCCAAATCTATATAAAGCAGCACCATTTGCATCAACGTTTACCTCAACTCACCCATCAAACCACACACCTCACCTATTAGAAGTAACAAAAGACCCTCCCTCTCAAAAGAATAAACAAGTATAAAAAAGAAGGCACTTCCCTCAAACAGAAACTACCCTCTATCTCTCTCTTTTCAAGCCTTAAATGAGTAAAAAAGAGTGAAGAAAGGAAAGAAAGGAGCACCATTTTTGGTTTGAGAAACATAATTAGCAAGAGAGTTCAAAATGGGGAAGAGAGAGTTTAATGGGGTGGTGTTGATGATGCTGTGTTTGTGGGTTTGTGGTGTCACAGCCTCTGTGACTTATGACCACAAAGCCATTGTGGTTGATGGCAAGAGAAGAATTTTGATCTCTGGCTCCATTCATTATCCTAGAAGCACACCTCAAATGTGGCCAGACCTTATTCAAAAGGCCAAAGATGGAGGCCTTGATGTCATTCAGACCTATGTGTTTTGGAATGGCCATGAACCTTCTCCTGGACAATACTATTTCGAAGATAGGTTCGACTTGGTTAAATTCGTGAAGCTCGCGCAGCAAGCAGGCCTCTATGTTCATCTCCGTATTGGTCCCTACATATGTGCTGAATGGAACTTGGGGGGATTTCCTGTCTGGCTCAAGTATGTTCCAGGCATTGCTTTCAGAACCGACAATGAGCCGTTCAAGGCTGCAATGCAAAAATTCACTGCAAAGATTGTCAGCTTGATGAAAGAAAATAGGTTGTTTCAATCCCAGGGTGGTCCAATAATTTTGTCACAGATTGAGAACGAGTATGGACCAGTGGAATGGGAAATTGGTGCTCCTGGAAAAGCTTATACGAAATGGGCTGCACAAATGGCTGTTGGTCTAGACACTGGTGTTCCATGGGTAATGTGCAAGCAAGAAGATGCTCCTGATCCTGTTATTGACACCTGCAACGGATTCTACTGTGAAAACTTCAAGCCCAACAAGAACACCAAACCCAAAATGTGGACTGAGAATTGGACTGGCTGGTACACTGATTTTGGCGGTGCAGTCCCTCGTAGACCAGCAGAAGACTTGGCGTTCTCAGTTGCAAGATTCATACAGAATGGTGGTTCATTCGTTAACTACTATATGTACCATGGAGGAACGAACTTTGGCCGGACATCAGGTGGCCTCTTCATTGCCACTAGCTATGACTATGATGCGCCGCTTGATGAATACGGACTTGAAAATGAACCAAAGTATGAGCATTTGAGAGCTTTGCATAAAGCAATAAAACAAAGTGAACCTGCTTTAGTGGCTACAGATCCCAAAGTGCAATCGCTTGGATATAACCTTGAGGCCCACGTGTTCTCGGCCCCAGGTGCTTGTGCTGCATTCATTGCTAATTATGACACCAAATCTTATGCAAAAGCTAAATTTGGAAATGGGCAATATGATCTACCGCCTTGGTCTATCAGTATTCTTCCTGATTGCAAAACTGTTGTTTACAACACAGCAAAGGTTGGTTACGGCTGGCTGAAAAAGATGACTCCTGTAAACAGTGCATTTGCTTGGCAGTCATACAATGAAGAACCTGCCTCATCCAGTCAAGCTGATTCCATTGCAGCATATGCACTTTGGGAGCAGGTCAACGTGACCCGCGATTCTTCAGATTATTTGTGGTATATGACAGATGTCAACGTTAATGCTAATGAAGGATTTCTAAAGAATGGACAATCTCCTCTTCTAACTGTAATGTCAGCTGGCCATGTTCTCCATGTGTTCATTAACGGTCAACTTGCAGGAACTGTGTGGGGGGGATTGGGAAATCCTAAATTGACATTTAGTGACAATGTGAAGCTGAGGGCTGGCAATAACAAGCTTTCTTTACTTAGCGTTGCAGTTGGTCTCCCGAATGTTGGTGTGCACTTTGAAACATGGAATGCGGGGGTGTTAGGCCCAGTCACTCTGAAGGGTCTAAATGAGGGGACTCGAGACTTGTCCCGGCAGAAATGGTCTTACAAGGTTGGACTGAAAGGTGAATCCTTGAGCCTTCACACCGAAAGTGGGAGTAGCTCTGTGGAATGGATACAAGGATCATTAGTGGCTAAAAAACAACCTTTGACATGGTACAAGACAACTTTTAGCGCACCGGCCGGCAATGATCCATTGGCTCTAGATTTGGGAAGCATGGGAAAGGGTGAAGTGTGGGTAAACGGTCGAAGCATTGGTCGCCATTGGCCTGGATATATAGCACATGGTAGTTGCAATGCTTGTAATTATGCTGGATATTATACTGATACAAAATGCCGGACGAATTGTGGACAACCTTCTCAGAGATGGTATCATGTTCCTCGCTCATGGCTGAGCTCAGGTGGTAACTCCTTGGTTGTGTTTGAAGAATGGGGAGGTGACCCTAATGGAATTGCTTTGGTGAAAAGAACATGAAGTGTGATATTTTATGATGCTCTCTTAAAAGGCATTGACAGGCAATATATATCTTGTAACAAATGTCTAGGAAATGCAAAGAAGCTGTCAAGTGAGTCCTATGCGGTTAGGACCCTATGATGCAGCAATTTACCAAATACGTGTGGTTTAGATCATATTAGGTTCAGTATATAAAAAATATTTGAAGTTCATAATTGGTGCTCCTTGTCTTCTGGTTGTTCAAGTATACCTCAAAAGATTGCCAAGGCCTAATCATGCATTGCCTGGCCAAAAACAAAGATTTATATAAGAGAATTTGGATGCGCAAAGACTGTGTATACTGTACATAGTCAAGTCAGGCTATTGTGCTGAATATTGCCCCATGTATTACAGGGCTTGTATCAATGAAGATTGAGCCCTTACACATTTATTTAATTTACTATGATACAATGGAAAGAATTGTAGACACGCAAAATGTGTCGGAGAGTATATTTGCTATATTCTGCCAGAAATAATTGTGTTTTCCCATTATAATTATTATGTAAGAACAGATTGAAAGTAATAAAATATCCTTTGAAATATTTGTCTTGTTA

Coding sequences of Glyma.09g062900

Limit To All Plant Sequences

>Glyma.09g062900.1 sequence-type=CDS polypeptide=Glyma.09g062900.1.p locus=Glyma.09g062900 ID=Glyma.09g062900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGGGAAGAGAGAGTTTAATGGGGTGGTGTTGATGATGCTGTGTTTGTGGGTTTGTGGTGTCACAGCCTCTGTGACTTATGACCACAAAGCCATTGTGGTTGATGGCAAGAGAAGAATTTTGATCTCTGGCTCCATTCATTATCCTAGAAGCACACCTCAAATGTGGCCAGACCTTATTCAAAAGGCCAAAGATGGAGGCCTTGATGTCATTCAGACCTATGTGTTTTGGAATGGCCATGAACCTTCTCCTGGACAATACTATTTCGAAGATAGGTTCGACTTGGTTAAATTCGTGAAGCTCGCGCAGCAAGCAGGCCTCTATGTTCATCTCCGTATTGGTCCCTACATATGTGCTGAATGGAACTTGGGGGGATTTCCTGTCTGGCTCAAGTATGTTCCAGGCATTGCTTTCAGAACCGACAATGAGCCGTTCAAGGCTGCAATGCAAAAATTCACTGCAAAGATTGTCAGCTTGATGAAAGAAAATAGGTTGTTTCAATCCCAGGGTGGTCCAATAATTTTGTCACAGATTGAGAACGAGTATGGACCAGTGGAATGGGAAATTGGTGCTCCTGGAAAAGCTTATACGAAATGGGCTGCACAAATGGCTGTTGGTCTAGACACTGGTGTTCCATGGGTAATGTGCAAGCAAGAAGATGCTCCTGATCCTGTTATTGACACCTGCAACGGATTCTACTGTGAAAACTTCAAGCCCAACAAGAACACCAAACCCAAAATGTGGACTGAGAATTGGACTGGCTGGTACACTGATTTTGGCGGTGCAGTCCCTCGTAGACCAGCAGAAGACTTGGCGTTCTCAGTTGCAAGATTCATACAGAATGGTGGTTCATTCGTTAACTACTATATGTACCATGGAGGAACGAACTTTGGCCGGACATCAGGTGGCCTCTTCATTGCCACTAGCTATGACTATGATGCGCCGCTTGATGAATACGGACTTGAAAATGAACCAAAGTATGAGCATTTGAGAGCTTTGCATAAAGCAATAAAACAAAGTGAACCTGCTTTAGTGGCTACAGATCCCAAAGTGCAATCGCTTGGATATAACCTTGAGGCCCACGTGTTCTCGGCCCCAGGTGCTTGTGCTGCATTCATTGCTAATTATGACACCAAATCTTATGCAAAAGCTAAATTTGGAAATGGGCAATATGATCTACCGCCTTGGTCTATCAGTATTCTTCCTGATTGCAAAACTGTTGTTTACAACACAGCAAAGGTTGGTTACGGCTGGCTGAAAAAGATGACTCCTGTAAACAGTGCATTTGCTTGGCAGTCATACAATGAAGAACCTGCCTCATCCAGTCAAGCTGATTCCATTGCAGCATATGCACTTTGGGAGCAGGTCAACGTGACCCGCGATTCTTCAGATTATTTGTGGTATATGACAGATGTCAACGTTAATGCTAATGAAGGATTTCTAAAGAATGGACAATCTCCTCTTCTAACTGTAATGTCAGCTGGCCATGTTCTCCATGTGTTCATTAACGGTCAACTTGCAGGAACTGTGTGGGGGGGATTGGGAAATCCTAAATTGACATTTAGTGACAATGTGAAGCTGAGGGCTGGCAATAACAAGCTTTCTTTACTTAGCGTTGCAGTTGGTCTCCCGAATGTTGGTGTGCACTTTGAAACATGGAATGCGGGGGTGTTAGGCCCAGTCACTCTGAAGGGTCTAAATGAGGGGACTCGAGACTTGTCCCGGCAGAAATGGTCTTACAAGGTTGGACTGAAAGGTGAATCCTTGAGCCTTCACACCGAAAGTGGGAGTAGCTCTGTGGAATGGATACAAGGATCATTAGTGGCTAAAAAACAACCTTTGACATGGTACAAGACAACTTTTAGCGCACCGGCCGGCAATGATCCATTGGCTCTAGATTTGGGAAGCATGGGAAAGGGTGAAGTGTGGGTAAACGGTCGAAGCATTGGTCGCCATTGGCCTGGATATATAGCACATGGTAGTTGCAATGCTTGTAATTATGCTGGATATTATACTGATACAAAATGCCGGACGAATTGTGGACAACCTTCTCAGAGATGGTATCATGTTCCTCGCTCATGGCTGAGCTCAGGTGGTAACTCCTTGGTTGTGTTTGAAGAATGGGGAGGTGACCCTAATGGAATTGCTTTGGTGAAAAGAACATGA

>Glyma.09g062900.2 sequence-type=CDS polypeptide=Glyma.09g062900.2.p locus=Glyma.09g062900 ID=Glyma.09g062900.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGGGAAGAGAGAGTTTAATGGGGTGGTGTTGATGATGCTGTGTTTGTGGGTTTGTGGTGTCACAGCCTCTGTGACTTATGACCACAAAGCCATTGTGGTTGATGGCAAGAGAAGAATTTTGATCTCTGGCTCCATTCATTATCCTAGAAGCACACCTCAAATGTGGCCAGACCTTATTCAAAAGGCCAAAGATGGAGGCCTTGATGTCATTCAGACCTATGTGTTTTGGAATGGCCATGAACCTTCTCCTGGACAATACTATTTCGAAGATAGGTTCGACTTGGTTAAATTCGTGAAGCTCGCGCAGCAAGCAGGCCTCTATGTTCATCTCCGTATTGGTCCCTACATATGTGCTGAATGGAACTTGGGGGGATTTCCTGTCTGGCTCAAGTATGTTCCAGGCATTGCTTTCAGAACCGACAATGAGCCGTTCAAGGCTGCAATGCAAAAATTCACTGCAAAGATTGTCAGCTTGATGAAAGAAAATAGGTTGTTTCAATCCCAGGGTGGTCCAATAATTTTGTCACAGATTGAGAACGAGTATGGACCAGTGGAATGGGAAATTGGTGCTCCTGGAAAAGCTTATACGAAATGGGCTGCACAAATGGCTGTTGGTCTAGACACTGGTGTTCCATGGGTAATGTGCAAGCAAGAAGATGCTCCTGATCCTGTTATTGACACCTGCAACGGATTCTACTGTGAAAACTTCAAGCCCAACAAGAACACCAAACCCAAAATGTGGACTGAGAATTGGACTGGCTGGTACACTGATTTTGGCGGTGCAGTCCCTCGTAGACCAGCAGAAGACTTGGCGTTCTCAGTTGCAAGATTCATACAGAATGGTGGTTCATTCGTTAACTACTATATGTACCATGGAGGAACGAACTTTGGCCGGACATCAGGTGGCCTCTTCATTGCCACTAGCTATGACTATGATGCGCCGCTTGATGAATACGGACTTGAAAATGAACCAAAGTATGAGCATTTGAGAGCTTTGCATAAAGCAATAAAACAAAGTGAACCTGCTTTAGTGGCTACAGATCCCAAAGTGCAATCGCTTGGATATAACCTTGAGGCCCACGTGTTCTCGGCCCCAGGTGCTTGTGCTGCATTCATTGCTAATTATGACACCAAATCTTATGCAAAAGCTAAATTTGGAAATGGGCAATATGATCTACCGCCTTGGTCTATCAGTATTCTTCCTGATTGCAAAACTGTTGTTTACAACACAGCAAAGGTTGGTTACGGCTGGCTGAAAAAGATGACTCCTGTAAACAGTGCATTTGCTTGGCAGTCATACAATGAAGAACCTGCCTCATCCAGTCAAGCTGATTCCATTGCAGCATATGCACTTTGGGAGCAGGTCAACGTGACCCGCGATTCTTCAGATTATTTGTGGTATATGACAGATGTCAACGTTAATGCTAATGAAGGATTTCTAAAGAATGGACAATCTCCTCTTCTAACTGTAATGTCAGCTGGCCATGTTCTCCATGTGTTCATTAACGGTCAACTTGCAGGAACTGTGTGGGGGGGATTGGGAAATCCTAAATTGACATTTAGTGACAATGTGAAGCTGAGGGCTGGCAATAACAAGCTTTCTTTACTTAGCGTTGCAGTTGGTCTCCCGAATGTTGGTGTGCACTTTGAAACATGGAATGCGGGGGTGTTAGGCCCAGTCACTCTGAAGGGTCTAAATGAGGGGACTCGAGACTTGTCCCGGCAGAAATGGTCTTACAAGGTTGGACTGAAAGGTGAATCCTTGAGCCTTCACACCGAAAGTGGGAGTAGCTCTGTGGAATGGATACAAGGATCATTAGTGGCTAAAAAACAACCTTTGACATGGTACAAGACAACTTTTAGCGCACCGGCCGGCAATGATCCATTGGCTCTAGATTTGGGAAGCATGGGAAAGGGTGAAGTGTGGGTAAACGGTCGAAGCATTGGTCGCCATTGGCCTGGATATATAGCACATGGTAGTTGCAATGCTTGTAATTATGCTGGATATTATACTGATACAAAATGCCGGACGAATTGTGGACAACCTTCTCAGAGATGGTATCATGTTCCTCGCTCATGGCTGAGCTCAGGTGGTAACTCCTTGGTTGTGTTTGAAGAATGGGGAGGTGACCCTAATGGAATTGCTTTGGTGAAAAGAACATGA

Predicted protein sequences of Glyma.09g062900

Limit To All Plant Sequences

>Glyma.09g062900.1.p sequence-type=predicted peptide transcript=Glyma.09g062900.1 locus=Glyma.09g062900 ID=Glyma.09g062900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MGKREFNGVVLMMLCLWVCGVTASVTYDHKAIVVDGKRRILISGSIHYPRSTPQMWPDLIQKAKDGGLDVIQTYVFWNGHEPSPGQYYFEDRFDLVKFVKLAQQAGLYVHLRIGPYICAEWNLGGFPVWLKYVPGIAFRTDNEPFKAAMQKFTAKIVSLMKENRLFQSQGGPIILSQIENEYGPVEWEIGAPGKAYTKWAAQMAVGLDTGVPWVMCKQEDAPDPVIDTCNGFYCENFKPNKNTKPKMWTENWTGWYTDFGGAVPRRPAEDLAFSVARFIQNGGSFVNYYMYHGGTNFGRTSGGLFIATSYDYDAPLDEYGLENEPKYEHLRALHKAIKQSEPALVATDPKVQSLGYNLEAHVFSAPGACAAFIANYDTKSYAKAKFGNGQYDLPPWSISILPDCKTVVYNTAKVGYGWLKKMTPVNSAFAWQSYNEEPASSSQADSIAAYALWEQVNVTRDSSDYLWYMTDVNVNANEGFLKNGQSPLLTVMSAGHVLHVFINGQLAGTVWGGLGNPKLTFSDNVKLRAGNNKLSLLSVAVGLPNVGVHFETWNAGVLGPVTLKGLNEGTRDLSRQKWSYKVGLKGESLSLHTESGSSSVEWIQGSLVAKKQPLTWYKTTFSAPAGNDPLALDLGSMGKGEVWVNGRSIGRHWPGYIAHGSCNACNYAGYYTDTKCRTNCGQPSQRWYHVPRSWLSSGGNSLVVFEEWGGDPNGIALVKRT*

>Glyma.09g062900.2.p sequence-type=predicted peptide transcript=Glyma.09g062900.2 locus=Glyma.09g062900 ID=Glyma.09g062900.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MGKREFNGVVLMMLCLWVCGVTASVTYDHKAIVVDGKRRILISGSIHYPRSTPQMWPDLIQKAKDGGLDVIQTYVFWNGHEPSPGQYYFEDRFDLVKFVKLAQQAGLYVHLRIGPYICAEWNLGGFPVWLKYVPGIAFRTDNEPFKAAMQKFTAKIVSLMKENRLFQSQGGPIILSQIENEYGPVEWEIGAPGKAYTKWAAQMAVGLDTGVPWVMCKQEDAPDPVIDTCNGFYCENFKPNKNTKPKMWTENWTGWYTDFGGAVPRRPAEDLAFSVARFIQNGGSFVNYYMYHGGTNFGRTSGGLFIATSYDYDAPLDEYGLENEPKYEHLRALHKAIKQSEPALVATDPKVQSLGYNLEAHVFSAPGACAAFIANYDTKSYAKAKFGNGQYDLPPWSISILPDCKTVVYNTAKVGYGWLKKMTPVNSAFAWQSYNEEPASSSQADSIAAYALWEQVNVTRDSSDYLWYMTDVNVNANEGFLKNGQSPLLTVMSAGHVLHVFINGQLAGTVWGGLGNPKLTFSDNVKLRAGNNKLSLLSVAVGLPNVGVHFETWNAGVLGPVTLKGLNEGTRDLSRQKWSYKVGLKGESLSLHTESGSSSVEWIQGSLVAKKQPLTWYKTTFSAPAGNDPLALDLGSMGKGEVWVNGRSIGRHWPGYIAHGSCNACNYAGYYTDTKCRTNCGQPSQRWYHVPRSWLSSGGNSLVVFEEWGGDPNGIALVKRT*

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