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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A previous version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G57160.1 | AT | DNA ligase IV | JGI | N/A | IEA |
| GO:0006281 | GO-bp | DNA repair | EnsemblGenomes | N/A | IEA |
| GO:0006281 | GO-bp | DNA repair | JGI | N/A | IEA |
| GO:0006310 | GO-bp | DNA recombination | EnsemblGenomes | N/A | IEA |
| GO:0006310 | GO-bp | DNA recombination | JGI | N/A | IEA |
| GO:0051103 | GO-bp | DNA ligation involved in DNA repair | EnsemblGenomes | N/A | IEA |
| GO:0003677 | GO-mf | DNA binding | EnsemblGenomes | N/A | IEA |
| GO:0003910 | GO-mf | DNA ligase (ATP) activity | EnsemblGenomes | N/A | IEA |
| GO:0003910 | GO-mf | DNA ligase (ATP) activity | JGI | N/A | IEA |
| GO:0005524 | GO-mf | ATP binding | EnsemblGenomes | N/A | IEA |
| PTHR10459 | Panther | DNA LIGASE | JGI | N/A | IEA |
| PTHR10459:SF7 | Panther | DNA LIGASE 4 | JGI | N/A | IEA |
| PF00533 | PFAM | BRCA1 C Terminus (BRCT) domain | JGI | N/A | IEA |
| PF04679 | PFAM | ATP dependent DNA ligase C terminal region | JGI | N/A | IEA |
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Glyma.09g060100 not represented in the dataset |
Glyma.09g060100 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.
Gene information in GlycineMine developed by LIS.
Gene families from PhyloGenes.
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma.15g166700 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma09g06760 | Wm82.a1.v1.1 | IGC | As supplied by JGI |
>Glyma.09g060100.1 sequence-type=CDS polypeptide=Glyma.09g060100.1.p locus=Glyma.09g060100 ID=Glyma.09g060100.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGTTATGCATTTCTTTTCTTCCTTTTTTAAGAGACGAGGGAATTGTTTTAAAAGACCACAGCTCCAAATGGGAACCTAGTGATTGTAGTGGAAAGTGGCTAAAATTGAAGCCTGAATACATTCAAGCTGGCTCTGATCTGGATGTACTTATCATAGGTGGCTGCTATGGCTCTGGACGACGTGGAGGAGAGGTTGCTCGATTCTTGGTTGGCCTCGCAGAGCGCCCATCCCCAAATACGCACCCTAAGCGATTTATCTCCTTTTGCAGAGTTGGTACTGGACTCTCTGATGATGAGCTTGATGCTGTAGTGACCAAACAAAAACCTTACTTCAGAAAGTATGAATATCCAAAGAAGATGCCACCAAGTTTTTATCAAGTAACTAATCATTCAAAAGAAAGACCTGATATGTGGGTTGATAGCCCTGAGAAATTAATTATTCGGTCTATAACCAGTGATATCCGAACTATAGAATCTGAGTCTCGGATTGACAGGGTGAGATATGGCAAGCCTTGGTATGAATGCTTTGATGTTCAATCATTTATAGAACTAGTACATTCTAGCAATGGTACCACGCAGAGGGATACAGAATATGGCAGCAAACAGGACAGTAAACCAAAACGACTGAAATCCTCCACTAGGGGAGAAAAGAAAAACTTGTCCATTGTTCCTTCTCATTTAATTCAAACTGATGTTTCCAGCGTTAAGGGGGGGTCCTTAATATTTTCAAATATGATGTTCTATTTTGTTAATGTGCCTCAATCTCATTCTCCCGAGTCCTTGCACAAATTAATTGCTGAGAATGGGGGAACTTTTTCAATGAATTCGAATAACTCAGTCATGCATTGTGTTGCAGCAGACAGCAAGGGGTTTAAATTTGAAGCAGCAAAGCATCATGGTGATATCATTCATTATTCTTGGGTGTTAGATTGCTATGAACAAAAGAAGCTTGTCTGCTTACAGCCTAAGTACTTCCTTTTTCTATCTGGACTGACAAAGAAGTTACAGGAAGAAGTTGATGAGTTCTCAGACACTTACCACTTGGACCTTGATCTTGGAGACATCAAGCCGCTCTTAAGCAATATTCATTGGTCAAAAGATGTTAGCACTGTCGATCATTACAGGAAAAAATACTGCCCAAAGGATAAGTGGTCTTTCTTTTACAGATGCTCTTTTTATTTCCACTATGTGATACCTTCATTGAAAAGTGATTGGCATTTTATGTTGCAACTTGCTCTGAGGAGATTTAAGCTTGAAGTTCTAATGGGTGGTGGAAAAGTTACCTCTAATCTTACTTGTGCAACCCATTTAGTGGCCTTGCTTGTGCCAGGATATCAGACTGACTTTGAACAAATACAGAGTAGTTTCACTTCAGTAGAAAGAAAATTTCTGCAAAGCAAGAGGTTGCATATAGTTAAATCCCAGTGGTTAGAAGATTGTTCAGACAGTAGCCAAAGATTACCAGAAGACTCTTACATGTACTACATAACAAATTTTTACTTTATTTTGATTAGCCCCTGTGAAGTGGACTTGGGGTTAGAGGCTCATCTGAGTGGAGATAATGTAGAAGAACAAAAAATTTCTTTCTCTGACAAGGGAATTCAACAGAGGAGTGTTAAAGCTGTTTGTGAAGACAGTATGGCTTTGGTATCCCAAGAGAAGGCACGACAACAAATTGCGAAAAAGCCTGCTAAAATATGTGAATATGAATCAACACATGAAAGTGATTCTCATGACATAAGACCAATTGAGCAGGAGATTGACACGAGTGCAGGAAGTCTTGATTTTTACAAGAAACGTTCAGAACCACAGGAGACTGAGGAATGTGAAAATGTCCAAGTTGCTGAGATTGGGGAAAATTTTGAACAAAATAAGGCAGACAAGCAAGAGGACTTGAATGACAATGAACATGAAAGAATGTTGGTTCCTGAAATAGAAATGTCTGATAGGCACAATGAGCAAAGCAATGAGGTTACTGAGAAACTTGAAATTTCGGATTACCCTCTGCAGGCAATGTTATTTGACATGATTCCTAGCCTTGCCACCCAAAAAGTCAAGCAACCGATGAATCGAAGTGTTAGAGAAGAGAAGCTACCAGAAACCTCCAATGCAGAAGCGGAGCCTATGATTACTAAGAAAAAGAAAGTTAGCTACAAGGATGTTGCTAGTGAGCTGCTGAAGGGC
>Glyma.09g060100.1.p sequence-type=predicted peptide transcript=Glyma.09g060100.1 locus=Glyma.09g060100 ID=Glyma.09g060100.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 MLCISFLPFLRDEGIVLKDHSSKWEPSDCSGKWLKLKPEYIQAGSDLDVLIIGGCYGSGRRGGEVARFLVGLAERPSPNTHPKRFISFCRVGTGLSDDELDAVVTKQKPYFRKYEYPKKMPPSFYQVTNHSKERPDMWVDSPEKLIIRSITSDIRTIESESRIDRVRYGKPWYECFDVQSFIELVHSSNGTTQRDTEYGSKQDSKPKRLKSSTRGEKKNLSIVPSHLIQTDVSSVKGGSLIFSNMMFYFVNVPQSHSPESLHKLIAENGGTFSMNSNNSVMHCVAADSKGFKFEAAKHHGDIIHYSWVLDCYEQKKLVCLQPKYFLFLSGLTKKLQEEVDEFSDTYHLDLDLGDIKPLLSNIHWSKDVSTVDHYRKKYCPKDKWSFFYRCSFYFHYVIPSLKSDWHFMLQLALRRFKLEVLMGGGKVTSNLTCATHLVALLVPGYQTDFEQIQSSFTSVERKFLQSKRLHIVKSQWLEDCSDSSQRLPEDSYMYYITNFYFILISPCEVDLGLEAHLSGDNVEEQKISFSDKGIQQRSVKAVCEDSMALVSQEKARQQIAKKPAKICEYESTHESDSHDIRPIEQEIDTSAGSLDFYKKRSEPQETEECENVQVAEIGENFEQNKADKQEDLNDNEHERMLVPEIEMSDRHNEQSNEVTEKLEISDYPLQAMLFDMIPSLATQKVKQPMNRSVREEKLPETSNAEAEPMITKKKKVSYKDVASELLKG
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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