Glyma.09g054300

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Report for Sequence Feature Glyma.09g054300

Feature Type:	gene_model
Chromosome:	Gm09
Start:	4799460
stop:	4803950
Source:	JGI
Version:	Wm82.a2.v1
High confidence:	yes

A previous version of this gene model can be found here:

Annotations for Glyma.09g054300

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G22370.1	AT		JGI	N/A	IEA
GO:0006357	GO-bp	regulation of transcription by RNA polymerase II	EnsemblGenomes	N/A	IEA
GO:0006369	GO-bp	termination of RNA polymerase II transcription	EnsemblGenomes	N/A	IEA
GO:0016592	GO-cc	mediator complex	EnsemblGenomes	N/A	IEA
GO:0070847	GO-cc	core mediator complex	EnsemblGenomes	N/A	IEA
GO:0003712	GO-mf	transcription cofactor activity	EnsemblGenomes	N/A	IEA
KOG3264	KOG	Uncharacterized conserved protein	JGI	N/A	IEA

Proteins Associated with Glyma.09g054300

Locus	Gene Symbol	Protein Name
	MED18-1	Mediator Complex 18 gene 1

Expression Patterns of Glyma.09g054300

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.

Gene information in GlycineMine developed by LIS.

Related Plant Genes

Gene families from PhyloGenes.

Paralogs of Glyma.09g054300

Paralog	Evidence	Comments
Glyma.15g160500	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.09g054300 Gene Call Version Wm82.a2.v1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma09g06000	Wm82.a1.v1.1	IGC	As supplied by JGI

Transcripts of Glyma.09g054300

Limit To All Plant Sequences

>Glyma.09g054300.2 sequence-type=transcript locus=Glyma.09g054300 ID=Glyma.09g054300.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
TATTGTCTACACCACTTAGTTAGACCCCCCATTTTCCTCTTCTTCCTGCCTCGTCTAGGGTTGTTATCTCCTCTCTTGTTTGGCAGCTATTCTTTCCGGTGGTTCCATAGTTCCGTTGACGCCTTTCCTTAGTTCCTCTCATTCGAAGTTGTAGGGACAGCTGTGCAAGGTGGATATGGAATGCGTGGTTCAGGGAATTATAGAGACACAGCATGTTGAGGCCTTGGAGATTCTTCTTCAAGGACTATGTGGCGTTCAGAGAGAACGATTGAGGATCCATGAAATATGCCTCAAGAGTGGTCAACATCTAGCCTCAGAGGTTCGACTGTTGTGTGACCTAGAGCAAGCTGAACCTTCGTGGACTGTTAAACATGTAGGTGGTGCAATGAGGGGAGCAGGCGCAGAGCAAATTTCTGTTCTGGTTAGGTCAATGGTGGAAAGCAAAACAAGCAAGAATGCACTGCGCATGTTTTATACACTGGGGTACAAGTTAGACCATGAGCTGTTGAGGGTGGGATTTTCCTTCAATTTCCACAGGGGTGCACAAATCACTGTAACGGTTTCATCAATCAATAAAATGCTGAAGCTGCATGCAACTGACGAGGCCGTGCCAGTAACACCTGGTATACAAATGGTTGAAGTAACAGCACCTGCAACTGCTGAAACCTACACTGAAGTTGCGGCTGCTGTGTCATCCTTTTGTGAATACCTTGCACCGCTTCTCCACCTGTCGAAACCAGGCATTTCAACCGGTGTTGTTCCTACAGCTGCTGCAGCTGCTGCATCTCTGATGTCTGACGGTGGGAGTACAACGTTGTAGTGGGACTGTACTGTTATCTTTATAAATGCACACTTGACAATAACATGTGAAAATTTAACGTAGGAACATGTGAAGTTCCATGACCCCACTTGCTTACTTCATATAAAGAGAAGTGAATATTAATTTTCACTTGACAAGAACATGTGAAAATTTAACGTAGGAACTTGTCTTCGGCCTTCCCATAAATCAATTGAAATTTGCACCTACCCTTTTGTTTTGTTTTATTTTTTGTCTGTACTGAAAATGTATAAGTTATCTTTTAGGAAAATAGCCCACGATATGAATGAAAATCAAGTGAACGTATGCAATTATGC

>Glyma.09g054300.3 sequence-type=transcript locus=Glyma.09g054300 ID=Glyma.09g054300.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
TATTGTCTACACCACTTAGTTAGACCCCCCATTTTCCTCTTCTTCCTGCCTCGTCTAGGGTTGTTATCTCCTCTCTTGTTTGGCAGCTATTCTTTCCGGTGGTTCCATAGTTCCGTTGACGCCTTTCCTTAGTTCCTCTCATTCGAAGTTGTAGGGACAGCTGTGCAAGGTGGATATGGAATGCGTGGTTCAGGGAATTATAGAGACACAGCATGTTGAGGCCTTGGAGATTCTTCTTCAAGGACTATGTGGCGTTCAGAGAGAACGATTGAGGATCCATGAAATATGCCTCAAGAGTGGTCAACATCTAGGTACTGTAGCCTCAGAGGTTCGACTGTTGTGTGACCTAGAGCAAGCTGAACCTTCGTGGACTGTTAAACATGTAGGTGGTGCAATGAGGGGAGCAGGCGCAGAGCAAATTTCTGTTCTGGTTAGGTCAATGGTGGAAAGCAAAACAAGCAAGAATGCACTGCGCATGTTTTATACACTGGGGTACAAGTTAGACCATGAGCTGTTGAGGGTGGGATTTTCCTTCAATTTCCACAGGGGTGCACAAATCACTGTAACGGTTTCATCAATCAATAAAATGCTGAAGCTGCATGCAACTGACGAGGCCGTGCCAGTAACACCTGGTATACAAATGGTTGAAGTAACAGCACCTGCAACTGCTGAAACCTACACTGAAGTTGCGGCTGCTGTGTCATCCTTTTGTGAATACCTTGCACCGCTTCTCCACCTGTCGAAACCAGGCATTTCAACCGGTGTTGTTCCTACAGCTGCTGCAGCTGCTGCATCTCTGATGTCTGACGGTGGGAGTACAACGTTGTAGTGGGACTGTACTGTTATCTTTATAAATGCACACTTGACAATAACATGTGAAAATTTAACGTAGGAACATGTGAAGTTCCATGACCCCACTTGCTTACTTCATATAAAGAGAAGTGAATATTAATTTTCACTTGACAAGAACATGTGAAAATTTAACGTAGGAACTTGTCTTCGGCCTTCCCATAAATCAATTGAAATTTGCACCTACCCTTTTGTTTTGTTTTATTTTTTGTCTGTACTGAAAATGTATAAGTTATCTTTTAGGAAAATAGCCCACGATATGAATGAAAATCAAGTGAACGTATGCAATTATGC

>Glyma.09g054300.4 sequence-type=transcript locus=Glyma.09g054300 ID=Glyma.09g054300.4.Wm82.a2.v1 annot-version=Wm82.a2.v1
TATTGTCTACACCACTTAGTTAGACCCCCCATTTTCCTCTTCTTCCTGCCTCGTCTAGGGTTGTTATCTCCTCTCTTGTTTGGCAGCTATTCTTTCCGGTGGTTCCATAGTTCCGTTGACGCCTTTCCTTAGTTCCTCTCATTCGAAGTTGTAGGGACAGGGTGTTTTGGTTTTATATGTGCTCAACCGCTTTTCTTTTCGTGGCTTAATCTCTGTGCAAGGTGGATATGGAATGCGTGGTTCAGGGAATTATAGAGACACAGCATGTTGAGGCCTTGGAGATTCTTCTTCAAGGACTATGTGGCGTTCAGAGAGAACGATTGAGGATCCATGAAATATGCCTCAAGAGTGGTCAACATCTAGGTACTGTAGCCTCAGAGGTTCGACTGTTGTGTGACCTAGAGCAAGCTGAACCTTCGTGGACTGTTAAACATGTAGGTGGTGCAATGAGGGGAGCAGGCGCAGAGCAAATTTCTGTTCTGGTTAGGTCAATGGTGGAAAGCAAAACAAGCAAGAATGCACTGCGCATGTTTTATACACTGGGGTACAAGTTAGACCATGAGCTGTTGAGGGTGGGATTTTCCTTCAATTTCCACAGGGGTGCACAAATCACTGTAACGGTTTCATCAATCAATAAAATGCTGAAGCTGCATGCAACTGACGAGGCCGTGCCAGTAACACCTGGTATACAAATGGTTGAAGTAACAGCACCTGCAACTGCTGAAACCTACACTGAAGTTGCGGCTGCTGTGTCATCCTTTTGTGAATACCTTGCACCGCTTCTCCACCTGTCGAAACCAGGCATTTCAACCGGTGTTGTTCCTACAGCTGCTGCAGCTGCTGCATCTCTGATGTCTGACGGTGGGAGTACAACGTTGTAGTGGGACTGTACTGTTATCTTTATAAATGCACACTTGACAATAACATGTGAAAATTTAACGTAGGAACATGTGAAGTTCCATGACCCCACTTGCTTACTTCATATAAAGAGAAGTGAATATTAATTTTCACTTGACAAGAACATGTGAAAATTTAACGTAGGAACTTGTCTTCGGCCTTCCCATAAATCAATTGAAATTTGCACCTACCCTTTTGTTTTGTTTTATTTTTTGTCTGTACTGAAAATGTATAAGTTATCTTTTAGGAAAATAGCCCACGATATGAATGAAAATCAAGTGAACGTATGCAATTATGC

Coding sequences of Glyma.09g054300

Limit To All Plant Sequences

>Glyma.09g054300.1 sequence-type=CDS polypeptide=Glyma.09g054300.1.p locus=Glyma.09g054300 ID=Glyma.09g054300.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGAATGCGTGGTTCAGGGAATTATAGAGACACAGCATGTTGAGGCCTTGGAGATTCTTCTTCAAGGACTATGTGGCGTTCAGAGAGAACGATTGAGGATCCATGAAATATGCCTCAAGAGTGGTCAACATCTAGGTACTGTAGCCTCAGAGGTTCGACTGTTGTGTGACCTAGAGCAAGCTGAACCTTCGTGGACTGTTAAACATGTAGGTGGTGCAATGAGGGGAGCAGGCGCAGAGCAAATTTCTGTTCTGGTTAGGTCAATGGTGGAAAGCAAAACAAGCAAGAATGCACTGCGCATGTTTTATACACTGGGGTACAAGTTAGACCATGAGCTGTTGAGGGTGGGATTTTCCTTCAATTTCCACAGGGGTGCACAAATCACTGTAACGGTTTCATCAATCAATAAAATGCTGAAGCTGCATGCAACTGACGAGGCCGTGCCAGTAACACCTGGTATACAAATGGTTGAAGTAACAGCACCTGCAACTGCTGAAACCTACACTGAAGTTGCGGCTGCTGTGTCATCCTTTTGTGAATACCTTGCACCGCTTCTCCACCTGTCGAAACCAGGCATTTCAACCGGTGTTGTTCCTACAGCTGCTGCAGCTGCTGCATCTCTGATGTCTGACGGTGGGAGTACAACGTTGTAG

>Glyma.09g054300.2 sequence-type=CDS polypeptide=Glyma.09g054300.2.p locus=Glyma.09g054300 ID=Glyma.09g054300.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGAATGCGTGGTTCAGGGAATTATAGAGACACAGCATGTTGAGGCCTTGGAGATTCTTCTTCAAGGACTATGTGGCGTTCAGAGAGAACGATTGAGGATCCATGAAATATGCCTCAAGAGTGGTCAACATCTAGCCTCAGAGGTTCGACTGTTGTGTGACCTAGAGCAAGCTGAACCTTCGTGGACTGTTAAACATGTAGGTGGTGCAATGAGGGGAGCAGGCGCAGAGCAAATTTCTGTTCTGGTTAGGTCAATGGTGGAAAGCAAAACAAGCAAGAATGCACTGCGCATGTTTTATACACTGGGGTACAAGTTAGACCATGAGCTGTTGAGGGTGGGATTTTCCTTCAATTTCCACAGGGGTGCACAAATCACTGTAACGGTTTCATCAATCAATAAAATGCTGAAGCTGCATGCAACTGACGAGGCCGTGCCAGTAACACCTGGTATACAAATGGTTGAAGTAACAGCACCTGCAACTGCTGAAACCTACACTGAAGTTGCGGCTGCTGTGTCATCCTTTTGTGAATACCTTGCACCGCTTCTCCACCTGTCGAAACCAGGCATTTCAACCGGTGTTGTTCCTACAGCTGCTGCAGCTGCTGCATCTCTGATGTCTGACGGTGGGAGTACAACGTTGTAG

>Glyma.09g054300.3 sequence-type=CDS polypeptide=Glyma.09g054300.3.p locus=Glyma.09g054300 ID=Glyma.09g054300.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGAATGCGTGGTTCAGGGAATTATAGAGACACAGCATGTTGAGGCCTTGGAGATTCTTCTTCAAGGACTATGTGGCGTTCAGAGAGAACGATTGAGGATCCATGAAATATGCCTCAAGAGTGGTCAACATCTAGGTACTGTAGCCTCAGAGGTTCGACTGTTGTGTGACCTAGAGCAAGCTGAACCTTCGTGGACTGTTAAACATGTAGGTGGTGCAATGAGGGGAGCAGGCGCAGAGCAAATTTCTGTTCTGGTTAGGTCAATGGTGGAAAGCAAAACAAGCAAGAATGCACTGCGCATGTTTTATACACTGGGGTACAAGTTAGACCATGAGCTGTTGAGGGTGGGATTTTCCTTCAATTTCCACAGGGGTGCACAAATCACTGTAACGGTTTCATCAATCAATAAAATGCTGAAGCTGCATGCAACTGACGAGGCCGTGCCAGTAACACCTGGTATACAAATGGTTGAAGTAACAGCACCTGCAACTGCTGAAACCTACACTGAAGTTGCGGCTGCTGTGTCATCCTTTTGTGAATACCTTGCACCGCTTCTCCACCTGTCGAAACCAGGCATTTCAACCGGTGTTGTTCCTACAGCTGCTGCAGCTGCTGCATCTCTGATGTCTGACGGTGGGAGTACAACGTTGTAG

>Glyma.09g054300.4 sequence-type=CDS polypeptide=Glyma.09g054300.4.p locus=Glyma.09g054300 ID=Glyma.09g054300.4.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGAATGCGTGGTTCAGGGAATTATAGAGACACAGCATGTTGAGGCCTTGGAGATTCTTCTTCAAGGACTATGTGGCGTTCAGAGAGAACGATTGAGGATCCATGAAATATGCCTCAAGAGTGGTCAACATCTAGGTACTGTAGCCTCAGAGGTTCGACTGTTGTGTGACCTAGAGCAAGCTGAACCTTCGTGGACTGTTAAACATGTAGGTGGTGCAATGAGGGGAGCAGGCGCAGAGCAAATTTCTGTTCTGGTTAGGTCAATGGTGGAAAGCAAAACAAGCAAGAATGCACTGCGCATGTTTTATACACTGGGGTACAAGTTAGACCATGAGCTGTTGAGGGTGGGATTTTCCTTCAATTTCCACAGGGGTGCACAAATCACTGTAACGGTTTCATCAATCAATAAAATGCTGAAGCTGCATGCAACTGACGAGGCCGTGCCAGTAACACCTGGTATACAAATGGTTGAAGTAACAGCACCTGCAACTGCTGAAACCTACACTGAAGTTGCGGCTGCTGTGTCATCCTTTTGTGAATACCTTGCACCGCTTCTCCACCTGTCGAAACCAGGCATTTCAACCGGTGTTGTTCCTACAGCTGCTGCAGCTGCTGCATCTCTGATGTCTGACGGTGGGAGTACAACGTTGTAG

Predicted protein sequences of Glyma.09g054300

Limit To All Plant Sequences

>Glyma.09g054300.1.p sequence-type=predicted peptide transcript=Glyma.09g054300.1 locus=Glyma.09g054300 ID=Glyma.09g054300.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MECVVQGIIETQHVEALEILLQGLCGVQRERLRIHEICLKSGQHLGTVASEVRLLCDLEQAEPSWTVKHVGGAMRGAGAEQISVLVRSMVESKTSKNALRMFYTLGYKLDHELLRVGFSFNFHRGAQITVTVSSINKMLKLHATDEAVPVTPGIQMVEVTAPATAETYTEVAAAVSSFCEYLAPLLHLSKPGISTGVVPTAAAAAASLMSDGGSTTL*

>Glyma.09g054300.2.p sequence-type=predicted peptide transcript=Glyma.09g054300.2 locus=Glyma.09g054300 ID=Glyma.09g054300.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MECVVQGIIETQHVEALEILLQGLCGVQRERLRIHEICLKSGQHLASEVRLLCDLEQAEPSWTVKHVGGAMRGAGAEQISVLVRSMVESKTSKNALRMFYTLGYKLDHELLRVGFSFNFHRGAQITVTVSSINKMLKLHATDEAVPVTPGIQMVEVTAPATAETYTEVAAAVSSFCEYLAPLLHLSKPGISTGVVPTAAAAAASLMSDGGSTTL*

>Glyma.09g054300.3.p sequence-type=predicted peptide transcript=Glyma.09g054300.3 locus=Glyma.09g054300 ID=Glyma.09g054300.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
MECVVQGIIETQHVEALEILLQGLCGVQRERLRIHEICLKSGQHLGTVASEVRLLCDLEQAEPSWTVKHVGGAMRGAGAEQISVLVRSMVESKTSKNALRMFYTLGYKLDHELLRVGFSFNFHRGAQITVTVSSINKMLKLHATDEAVPVTPGIQMVEVTAPATAETYTEVAAAVSSFCEYLAPLLHLSKPGISTGVVPTAAAAAASLMSDGGSTTL*

>Glyma.09g054300.4.p sequence-type=predicted peptide transcript=Glyma.09g054300.4 locus=Glyma.09g054300 ID=Glyma.09g054300.4.Wm82.a2.v1 annot-version=Wm82.a2.v1
MECVVQGIIETQHVEALEILLQGLCGVQRERLRIHEICLKSGQHLGTVASEVRLLCDLEQAEPSWTVKHVGGAMRGAGAEQISVLVRSMVESKTSKNALRMFYTLGYKLDHELLRVGFSFNFHRGAQITVTVSSINKMLKLHATDEAVPVTPGIQMVEVTAPATAETYTEVAAAVSSFCEYLAPLLHLSKPGISTGVVPTAAAAAASLMSDGGSTTL*

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