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Report for Sequence Feature Glyma.09g042000

Feature Type:gene_model
Chromosome:Gm09
Start:3579198
stop:3587876
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.09g042000
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G06810.1AT acyl-CoA dehydrogenase-related JGI N/AIEA
GO:0008152GO-bp metabolic process EnsemblGenomesN/AIEA
GO:0008152GO-bp metabolic process JGI N/AIEA
GO:0033539GO-bp fatty acid beta-oxidation using acyl-CoA dehydrogenase EnsemblGenomesN/AIEA
GO:0055114GO-bp oxidation-reduction process EnsemblGenomesN/AIEA
GO:0055114GO-bp oxidation-reduction process JGI N/AIEA
GO:0003995GO-mf acyl-CoA dehydrogenase activity EnsemblGenomesN/AIEA
GO:0003995GO-mf acyl-CoA dehydrogenase activity JGI N/AIEA
GO:0016627GO-mf oxidoreductase activity, acting on the CH-CH group of donors EnsemblGenomesN/AIEA
GO:0016627GO-mf oxidoreductase activity, acting on the CH-CH group of donors JGI N/AIEA
GO:0050660GO-mf flavin adenine dinucleotide binding EnsemblGenomesN/AIEA
GO:0050660GO-mf flavin adenine dinucleotide binding JGI N/AIEA
KOG1469 KOG Predicted acyl-CoA dehydrogenase JGI N/AIEA
PTHR10909Panther ELECTRON TRANSPORT OXIDOREDUCTASE JGI N/AIEA
PTHR10909:SF148Panther JGI N/AIEA
PF00441PFAM Acyl-CoA dehydrogenase, C-terminal domain JGI N/AIEA
PF01636PFAM Phosphotransferase enzyme family JGI N/AIEA
PF02770PFAM Acyl-CoA dehydrogenase, middle domain JGI N/AIEA
PF02771PFAM Acyl-CoA dehydrogenase, N-terminal domain JGI N/AIEA
GN7V-68119SoyCyc9-rxn Enzyme name not determined Plant Metabolic Network ISS

Expression Patterns of Glyma.09g042000
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.09g042000 not represented in the dataset
Glyma.09g042000 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.09g042000
ParalogEvidenceComments
Glyma.15g150900 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.09g042000 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma09g04710 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.09g042000
>Glyma.09g042000.1 sequence-type=CDS polypeptide=Glyma.09g042000.1.p locus=Glyma.09g042000 ID=Glyma.09g042000.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCGAGGAACACAGCAGACCTCGCAACGAACTTCAATGTTGCTCACCACTTCCCCCACGACTCTCTGCTCCGCTATTGCTCTTCCCACGTTTCTGGCTTCCCTCATCCCCCAACTCACTTCACCGTTTCCCAGTTTGGGCATGGACAATCCAACCCCACGTACTTGTTGGAAGTAGGTTCATATGGTTCCGTGGTGAAGCGCTATGTTCTCAGGAAGAAGCCTCCGGGGAAATTGCTTGCTTCAGCTCATGCCGTCGACAGAGAGTTTCAGGTTCTCCATGCATTGGGCACTCATACCAAAGTTCCGGTTCCCAAAGTTTTTTGTCTGTGCAATGATCCAACTGTTATTGGAACTGCGTTTTATATCATGGAATATTTGGAGGGGCGCATATTTCTTGACCCCAAGTTACCAGGTGTTACATCTCAAAAGAGGAGGGCAATTTACAGGGCAACAGCTAAAGCCTTAGCTTCCTTACATTCTGCTAATGTAGATTCCATTGGTCTGGGAAATTACGGGCGACGCAATGATTATTGCAAAAGACAGATTGAGAGGTGGGCTAAGCAATATGTTGCCTCAACCAGTGAGGGTAAACCTGCAAGTAATCCAAAAATGTTTGCCCTTATTGATTGGCTACGGAATCAAATCCCTCCTGAAGATTCTTCGGGAGCAACAGGAGGTCTGGTTCACGGAGATTTCCGCATTGACAACCTTGTGTTCCATCCCACAGAGGATCGAGTAATTGGAATACTTGACTGGGAATTGTCTACCCTTGGTAACCAAATGTGTGATGTTGCATATAGCTGTATGCCTTATATTGCAGATATTGGACCTGAAAAAGTACATGAAGGTATAGAGCATTTTGGATTACCTGAGGGAATCCCTTCATTACCAGAATATTTGGCTGATTACTGCTCTTTGGCACGAAGAAAATGGCCTGTTGCTGAATGGAAGTTCTATGTTGCCTTTTCTTTCTTCCGGGCAGCTTCAATTTATGCAGGAGTGTATAATAGATGGGTTAAGGGTAATGCATCGGGCGGTGAACGTGCTCGACACACAGAAGTACTTACAAATGGCCTTATAGATACTGCTTGGAAATTTATTGAACACAAATCTGTGCTTCCTCAGCATCCACCCTCAGATGCAAACGCTCAAGACTATTCCAAAGAGTTACCGAATGGGAATGATATACAGGAACTCTCAAATCAGGGGAAGTTTGTTCCTAATCAAAAGGTTTTGGTGCTGAGGAACAAATTAATTAAGTTCATGGAGGAACATATTTACCCCATGGAAAATGAATTTTATAAACTTGCTCAATCAGACTCACGTTGGACTGTTCACCCAGTAGAGGAAAAGTTAAAGGAAATGGCAAAGAAAGAAGGCTTGTGGAACTTATGGATTCCTCTTGATAGTGCTGTGAGAGCAAGAAATCTTCTCTTTGATGGGAGCAATAATTATCACTCTAGTGATGCAAATGACTTGCTATTAGGGGCTGGTCTCACAAATCTCGAATATGGATACCTTTGTGAGATCATGGGTCGTTCTCTTTGGGCTCCACAAGTGTTTAACTGTGGTGCACCTGACACAGGTAATATGGAGGTATTACTGCGCTATGGAAATAAAGAGCAACTACAAGAATGGCTAATTCCTTTGCTTGAGGGGACAATTAGGTCTGGATTTGCAATGACAGAACCACATGTTGCATCTTCCGATGCAACCAATATTGAGTGTTCTATCAAAAGGCAAGGAGATTCGTATATTATCAATGGGACAAAATGGTGGACAAGCGGTGCTATGGATCCAAGATGTAGAATTCTTATAGTCATGGGGAAAACTGACTTCAACGCTGCGAAGCATAAACAACAATCTATGATCTTAGTGGATGTCAAGACTCCTGGCATCCACATAAAGAGACCATTGACAGTGTTTGGCTTTGATGATGCTCCGCATGGGCATGCAGAAATAACATTTGAAAATGTTTGTGTGCCCGCAAAAAACATCATACTTGGCGAAGGACGTGGATTTGAGATTGCCCAAGGTAGGCTTGGTCCTGGAAGGCTCCACCATTGTATGAGACTGATAGGTGTTGCTGAGCGAGGCATGCATATGATGGTTCAAAGAGCTGTTAGCAGAAGAACATTTGGGAAGTTGATTGCTCAACATGGTTCATTTATTTCAGATATGGCCAAGTGCCGGATAGAGCTAGAGAGCACCAGATTGTTAGTGTTGGAAGCAGCTGACCAACTTGACAGGCATGGAACAAAAAAGCTCGAGGGATATTAG
Predicted protein sequences of Glyma.09g042000
>Glyma.09g042000.1.p sequence-type=predicted peptide transcript=Glyma.09g042000.1 locus=Glyma.09g042000 ID=Glyma.09g042000.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MARNTADLATNFNVAHHFPHDSLLRYCSSHVSGFPHPPTHFTVSQFGHGQSNPTYLLEVGSYGSVVKRYVLRKKPPGKLLASAHAVDREFQVLHALGTHTKVPVPKVFCLCNDPTVIGTAFYIMEYLEGRIFLDPKLPGVTSQKRRAIYRATAKALASLHSANVDSIGLGNYGRRNDYCKRQIERWAKQYVASTSEGKPASNPKMFALIDWLRNQIPPEDSSGATGGLVHGDFRIDNLVFHPTEDRVIGILDWELSTLGNQMCDVAYSCMPYIADIGPEKVHEGIEHFGLPEGIPSLPEYLADYCSLARRKWPVAEWKFYVAFSFFRAASIYAGVYNRWVKGNASGGERARHTEVLTNGLIDTAWKFIEHKSVLPQHPPSDANAQDYSKELPNGNDIQELSNQGKFVPNQKVLVLRNKLIKFMEEHIYPMENEFYKLAQSDSRWTVHPVEEKLKEMAKKEGLWNLWIPLDSAVRARNLLFDGSNNYHSSDANDLLLGAGLTNLEYGYLCEIMGRSLWAPQVFNCGAPDTGNMEVLLRYGNKEQLQEWLIPLLEGTIRSGFAMTEPHVASSDATNIECSIKRQGDSYIINGTKWWTSGAMDPRCRILIVMGKTDFNAAKHKQQSMILVDVKTPGIHIKRPLTVFGFDDAPHGHAEITFENVCVPAKNIILGEGRGFEIAQGRLGPGRLHHCMRLIGVAERGMHMMVQRAVSRRTFGKLIAQHGSFISDMAKCRIELESTRLLVLEAADQLDRHGTKKLEGY*






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