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Report for Sequence Feature Glyma.09g040100

Feature Type:gene_model
Chromosome:Gm09
Start:3346265
stop:3350055
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.09g040100
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
ATMG00160.1AT cytochrome oxidase 2 JGI N/AIEA
GO:0022900GO-bp electron transport chain EnsemblGenomesN/AIEA
GO:0022900GO-bp electron transport chain JGI N/AIEA
GO:0042773GO-bp ATP synthesis coupled electron transport EnsemblGenomesN/AIEA
GO:0055114GO-bp oxidation-reduction process EnsemblGenomesN/AIEA
GO:1902600GO-bp proton transmembrane transport EnsemblGenomesN/AIEA
GO:0005739GO-cc mitochondrion EnsemblGenomesN/AIEA
GO:0005743GO-cc mitochondrial inner membrane EnsemblGenomesN/AIEA
GO:0005751GO-cc mitochondrial respiratory chain complex IV EnsemblGenomesN/AIEA
GO:0016020GO-cc membrane EnsemblGenomesN/AIEA
GO:0016020GO-cc membrane JGI N/AIEA
GO:0016021GO-cc integral component of membrane EnsemblGenomesN/AIEA
GO:0016021GO-cc integral component of membrane JGI N/AIEA
GO:0070469GO-cc respiratory chain EnsemblGenomesN/AIEA
GO:0004129GO-mf cytochrome-c oxidase activity EnsemblGenomesN/AIEA
GO:0004129GO-mf cytochrome-c oxidase activity JGI N/AIEA
GO:0005507GO-mf copper ion binding EnsemblGenomesN/AIEA
GO:0005507GO-mf copper ion binding JGI N/AIEA
GO:0016491GO-mf oxidoreductase activity EnsemblGenomesN/AIEA
GO:0046872GO-mf metal ion binding EnsemblGenomesN/AIEA
KOG4767 KOG Cytochrome c oxidase, subunit II, and related proteins JGI N/AIEA
PTHR22888Panther CYTOCHROME C OXIDASE, SUBUNIT II JGI N/AIEA
PF00116PFAM Cytochrome C oxidase subunit II, periplasmic domain JGI N/AIEA
PF02790PFAM Cytochrome C oxidase subunit II, transmembrane domain JGI N/AIEA
PWY-3781SoyCyc9 aerobic respiration I (cytochrome c) Plant Metabolic Network ISS
GN7V-55853SoyCyc9-rxn cytochrome-c oxidase Plant Metabolic Network ISS

Proteins Associated with Glyma.09g040100
LocusGene SymbolProtein Name
COX2 Cytochrome C oxidase subunit 2
COX2 cytochrome c oxidase subunit 2, mitochondrial

Expression Patterns of Glyma.09g040100
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Gene model name correspondences to Glyma.09g040100 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma09g04480 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.09g040100
>Glyma.09g040100.1 sequence-type=CDS polypeptide=Glyma.09g040100.1.p locus=Glyma.09g040100 ID=Glyma.09g040100.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGGCCTGCTATCTTGTTTTAGGTCTACCGTCCTGAGAAAATGTTCCAAAGGAAGCTCTGGCATGTCAAGATTCCTGTATACGAACAATTTTCAACGAAACTTGATTTCGTCTGGTGGCAATGAATCGTATTATGGGTATTTTAACAGGAGATCATACACTTCACTTTATATGGGAACTGGAACTGTGGGTGGGATTACAAGTGCTAGAATCAGGGTGCCAAATGTAGGATGTGAAGGATTCATGTGCTCAAGTCATCTGTCAATCACTCAAAGAAATTCAAGATTGATCCATTCTACTAGCAAGATTGTTCCAAATTCTGAAATTCAGAATATAACTACTGAGATGGTGAAGACACCAGAGGTCTCAAGATGGATGGATCAAGTCATCCCTACAATAGCCCCTTGTGATGCAGCAGAACCATGGCAACTAGGGTTTCAAGATGCAGCAACACCTATAATGCAAGGAATAATAGACTTACATCACGATATCTTTTTCTTCGTCATTCAGATTGGAGTTTTTGTATCATGGGTCTTGCTTCGTGCTTTATGGCATTTCAGGTCTAAAATGAATCCAATCCCTCAAAGAATTGTTCATGGAACAACAATCGAGATTCTTTGGACCATATTTCCTAGTGTCATACTAATGTTCATTGCTATACCATCGTTTGCTTTGTTATACTCAATGGATGATATTGTAGTGGATCCAGCCATTACTATCAAAGCTATTGGACATCAATGGTATTGGACTTATGAGTATTCAGACTATAACAACTCTGATGAACAATCACTTGCTTTTGATAGTTATATGATTCCAGAAGATGATCTAGAATTAGGGCAATTACGTTTACTAGAAGTGGACAATAGAGTGGTAGTGCCAGCTAAAACTCATCTGCGTGTTATTATAACATCAGCTGATGTACTTCATAGTTGGGCAGTACCTTCCCTGGGTGTCAAATGTGATGCTGTGCCTGGTCGTTTGAATCAGATCTCTACTTTTATACAAAGAGAAGGGGTTTACTATGGTCAATGCAGTGAGATTTGTGGAACTAACCATGCCTTTATGCCTATTGTCATAGAAGCAGTTTCTACTAAAGATTATGGTTCTTGGGTTTCCAGTCAAGTCAACTAA
Predicted protein sequences of Glyma.09g040100
>Glyma.09g040100.1.p sequence-type=predicted peptide transcript=Glyma.09g040100.1 locus=Glyma.09g040100 ID=Glyma.09g040100.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MGLLSCFRSTVLRKCSKGSSGMSRFLYTNNFQRNLISSGGNESYYGYFNRRSYTSLYMGTGTVGGITSARIRVPNVGCEGFMCSSHLSITQRNSRLIHSTSKIVPNSEIQNITTEMVKTPEVSRWMDQVIPTIAPCDAAEPWQLGFQDAATPIMQGIIDLHHDIFFFVIQIGVFVSWVLLRALWHFRSKMNPIPQRIVHGTTIEILWTIFPSVILMFIAIPSFALLYSMDDIVVDPAITIKAIGHQWYWTYEYSDYNNSDEQSLAFDSYMIPEDDLELGQLRLLEVDNRVVVPAKTHLRVIITSADVLHSWAVPSLGVKCDAVPGRLNQISTFIQREGVYYGQCSEICGTNHAFMPIVIEAVSTKDYGSWVSSQVN*






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