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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A previous version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| ATMG00160.1 | AT | cytochrome oxidase 2 | JGI | N/A | IEA |
| GO:0022900 | GO-bp | electron transport chain | EnsemblGenomes | N/A | IEA |
| GO:0022900 | GO-bp | electron transport chain | JGI | N/A | IEA |
| GO:0042773 | GO-bp | ATP synthesis coupled electron transport | EnsemblGenomes | N/A | IEA |
| GO:0055114 | GO-bp | oxidation-reduction process | EnsemblGenomes | N/A | IEA |
| GO:1902600 | GO-bp | proton transmembrane transport | EnsemblGenomes | N/A | IEA |
| GO:0005739 | GO-cc | mitochondrion | EnsemblGenomes | N/A | IEA |
| GO:0005743 | GO-cc | mitochondrial inner membrane | EnsemblGenomes | N/A | IEA |
| GO:0005751 | GO-cc | mitochondrial respiratory chain complex IV | EnsemblGenomes | N/A | IEA |
| GO:0016020 | GO-cc | membrane | EnsemblGenomes | N/A | IEA |
| GO:0016020 | GO-cc | membrane | JGI | N/A | IEA |
| GO:0016021 | GO-cc | integral component of membrane | EnsemblGenomes | N/A | IEA |
| GO:0016021 | GO-cc | integral component of membrane | JGI | N/A | IEA |
| GO:0070469 | GO-cc | respiratory chain | EnsemblGenomes | N/A | IEA |
| GO:0004129 | GO-mf | cytochrome-c oxidase activity | EnsemblGenomes | N/A | IEA |
| GO:0004129 | GO-mf | cytochrome-c oxidase activity | JGI | N/A | IEA |
| GO:0005507 | GO-mf | copper ion binding | EnsemblGenomes | N/A | IEA |
| GO:0005507 | GO-mf | copper ion binding | JGI | N/A | IEA |
| GO:0016491 | GO-mf | oxidoreductase activity | EnsemblGenomes | N/A | IEA |
| GO:0046872 | GO-mf | metal ion binding | EnsemblGenomes | N/A | IEA |
| KOG4767 | KOG | Cytochrome c oxidase, subunit II, and related proteins | JGI | N/A | IEA |
| PTHR22888 | Panther | CYTOCHROME C OXIDASE, SUBUNIT II | JGI | N/A | IEA |
| PF00116 | PFAM | Cytochrome C oxidase subunit II, periplasmic domain | JGI | N/A | IEA |
| PF02790 | PFAM | Cytochrome C oxidase subunit II, transmembrane domain | JGI | N/A | IEA |
| PWY-3781 | SoyCyc9 | aerobic respiration I (cytochrome c) | Plant Metabolic Network | ISS | |
| GN7V-55853 | SoyCyc9-rxn | cytochrome-c oxidase | Plant Metabolic Network | ISS |
| Locus | Gene Symbol | Protein Name |
|---|---|---|
| COX2 | Cytochrome C oxidase subunit 2 | |
| COX2 | cytochrome c oxidase subunit 2, mitochondrial |
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Glyma.09g040100 not represented in the dataset |
Glyma.09g040100 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.
Gene information in GlycineMine developed by LIS.
Gene families from PhyloGenes.
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma09g04480 | Wm82.a1.v1.1 | IGC | As supplied by JGI |
>Glyma.09g040100.1 sequence-type=CDS polypeptide=Glyma.09g040100.1.p locus=Glyma.09g040100 ID=Glyma.09g040100.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGGGCCTGCTATCTTGTTTTAGGTCTACCGTCCTGAGAAAATGTTCCAAAGGAAGCTCTGGCATGTCAAGATTCCTGTATACGAACAATTTTCAACGAAACTTGATTTCGTCTGGTGGCAATGAATCGTATTATGGGTATTTTAACAGGAGATCATACACTTCACTTTATATGGGAACTGGAACTGTGGGTGGGATTACAAGTGCTAGAATCAGGGTGCCAAATGTAGGATGTGAAGGATTCATGTGCTCAAGTCATCTGTCAATCACTCAAAGAAATTCAAGATTGATCCATTCTACTAGCAAGATTGTTCCAAATTCTGAAATTCAGAATATAACTACTGAGATGGTGAAGACACCAGAGGTCTCAAGATGGATGGATCAAGTCATCCCTACAATAGCCCCTTGTGATGCAGCAGAACCATGGCAACTAGGGTTTCAAGATGCAGCAACACCTATAATGCAAGGAATAATAGACTTACATCACGATATCTTTTTCTTCGTCATTCAGATTGGAGTTTTTGTATCATGGGTCTTGCTTCGTGCTTTATGGCATTTCAGGTCTAAAATGAATCCAATCCCTCAAAGAATTGTTCATGGAACAACAATCGAGATTCTTTGGACCATATTTCCTAGTGTCATACTAATGTTCATTGCTATACCATCGTTTGCTTTGTTATACTCAATGGATGATATTGTAGTGGATCCAGCCATTACTATCAAAGCTATTGGACATCAATGGTATTGGACTTATGAGTATTCAGACTATAACAACTCTGATGAACAATCACTTGCTTTTGATAGTTATATGATTCCAGAAGATGATCTAGAATTAGGGCAATTACGTTTACTAGAAGTGGACAATAGAGTGGTAGTGCCAGCTAAAACTCATCTGCGTGTTATTATAACATCAGCTGATGTACTTCATAGTTGGGCAGTACCTTCCCTGGGTGTCAAATGTGATGCTGTGCCTGGTCGTTTGAATCAGATCTCTACTTTTATACAAAGAGAAGGGGTTTACTATGGTCAATGCAGTGAGATTTGTGGAACTAACCATGCCTTTATGCCTATTGTCATAGAAGCAGTTTCTACTAAAGATTATGGTTCTTGGGTTTCCAGTCAAGTCAACTAA
>Glyma.09g040100.1.p sequence-type=predicted peptide transcript=Glyma.09g040100.1 locus=Glyma.09g040100 ID=Glyma.09g040100.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 MGLLSCFRSTVLRKCSKGSSGMSRFLYTNNFQRNLISSGGNESYYGYFNRRSYTSLYMGTGTVGGITSARIRVPNVGCEGFMCSSHLSITQRNSRLIHSTSKIVPNSEIQNITTEMVKTPEVSRWMDQVIPTIAPCDAAEPWQLGFQDAATPIMQGIIDLHHDIFFFVIQIGVFVSWVLLRALWHFRSKMNPIPQRIVHGTTIEILWTIFPSVILMFIAIPSFALLYSMDDIVVDPAITIKAIGHQWYWTYEYSDYNNSDEQSLAFDSYMIPEDDLELGQLRLLEVDNRVVVPAKTHLRVIITSADVLHSWAVPSLGVKCDAVPGRLNQISTFIQREGVYYGQCSEICGTNHAFMPIVIEAVSTKDYGSWVSSQVN*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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