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Report for Sequence Feature Glyma.09g030400

Feature Type:gene_model
Chromosome:Gm09
Start:2511815
stop:2515073
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.09g030400
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G30630.1AT Coatomer epsilon subunit JGI N/AIEA
GO:0006888GO-bp ER to Golgi vesicle-mediated transport EnsemblGenomesN/AIEA
GO:0006890GO-bp retrograde vesicle-mediated transport, Golgi to ER EnsemblGenomesN/AIEA
GO:0006890GO-bp retrograde vesicle-mediated transport, Golgi to ER JGI N/AIEA
GO:0006891GO-bp intra-Golgi vesicle-mediated transport EnsemblGenomesN/AIEA
GO:0015031GO-bp protein transport EnsemblGenomesN/AIEA
GO:0016192GO-bp vesicle-mediated transport EnsemblGenomesN/AIEA
GO:0000139GO-cc Golgi membrane EnsemblGenomesN/AIEA
GO:0005737GO-cc cytoplasm EnsemblGenomesN/AIEA
GO:0005794GO-cc Golgi apparatus EnsemblGenomesN/AIEA
GO:0016020GO-cc membrane EnsemblGenomesN/AIEA
GO:0030126GO-cc COPI vesicle coat EnsemblGenomesN/AIEA
GO:0031410GO-cc cytoplasmic vesicle EnsemblGenomesN/AIEA
GO:0005198GO-mf structural molecule activity EnsemblGenomesN/AIEA
GO:0005198GO-mf structural molecule activity JGI N/AIEA
GO:0005515GO-mf protein binding EnsemblGenomesN/AIEA
GO:0005515GO-mf protein binding JGI N/AIEA
KOG3081 KOG Vesicle coat complex COPI, epsilon subunit JGI N/AIEA
PTHR10805Panther COATOMER SUBUNIT EPSILON JGI N/AIEA
PF04733PFAM Coatomer epsilon subunit JGI N/AIEA

Proteins Associated with Glyma.09g030400
LocusGene SymbolProtein Name
COPE2 epsilon2-COP

Expression Patterns of Glyma.09g030400
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.09g030400
ParalogEvidenceComments
Glyma.15g136100 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.09g030400 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma09g03500 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.09g030400
>Glyma.09g030400.1 sequence-type=CDS polypeptide=Glyma.09g030400.1.p locus=Glyma.09g030400 ID=Glyma.09g030400.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCTACACCGGACCACCTGTTCAACCTCCGCAACAACTTGTATCTCGGGGCGTACCAAGCCGCCATCAACAGCGGCGACGTCACCAACCTCTCCCAAGAAGACTCCCTCGAGCGCGACACCCTCGTCCACCGCTGCTACATCGCCCTCGGCCAGCTTCAGTTCGTCATCTCCGAGATCCATGACGACGCTCCCACACCTCTCCAAGCCGTCAAACTCCTCGCTCTCTATTTCTCCTCCCCCGACACCAAGGATTCCGCCATCGCGAGTCTCAAGGAGTGGCTTGCCGATCCCGCCATTGCAAACAACGCCACGCTGAGGCTCGTCGCCGGTCTCGTCTTCCTCCATGAAAATGATTTCAACGAAGCCCTCAAACACACCAATGCTGGTGGAACCATGGACCTGCACGCGTTGAATGTTCAGATCTTTATTAAGATGCATAGGTCGGATTATGCTGAGAGGCAGCTTCGGATCATGCAGCAGATTGATGAAGATCACACTCTCACTCAACTCGCCAATGCCTGGCTCAATTTGGCTGTGGGTGGGTCAAAGATCCAGGAGGCGTATCTGATCTTCCAGGATTTGTCGGAGAGGTATCAGTCCACCAGCTTGCTTTTGAATGGCAAGGCTGTTTGCTGCATGCACATGGGCAACTTCGACGAAGCCGAGACCCTTTTGGTTGAAGCTCTAAACAAGGATGCCAGGGATCCAGAAACTCTAGCCAATCTAGTTGTATGCTGTCTTCACCTCGGCAAACCATCTAACAAATCATTCAGCCAGCTGAAAATTTCTCATCCAGAGCATGTATTGGTCAAACGGGTATCATCAGCTGAAGAAAGTTTTGATAGAGCGCTACAATCATTTTCCTCATGA
Predicted protein sequences of Glyma.09g030400
>Glyma.09g030400.1.p sequence-type=predicted peptide transcript=Glyma.09g030400.1 locus=Glyma.09g030400 ID=Glyma.09g030400.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MATPDHLFNLRNNLYLGAYQAAINSGDVTNLSQEDSLERDTLVHRCYIALGQLQFVISEIHDDAPTPLQAVKLLALYFSSPDTKDSAIASLKEWLADPAIANNATLRLVAGLVFLHENDFNEALKHTNAGGTMDLHALNVQIFIKMHRSDYAERQLRIMQQIDEDHTLTQLANAWLNLAVGGSKIQEAYLIFQDLSERYQSTSLLLNGKAVCCMHMGNFDEAETLLVEALNKDARDPETLANLVVCCLHLGKPSNKSFSQLKISHPEHVLVKRVSSAEESFDRALQSFSS*






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