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Report for Sequence Feature Glyma.09g025600

Feature Type:gene_model
Chromosome:Gm09
Start:2083140
stop:2088163
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.09g025600
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G63890.1AT histidinol dehydrogenase JGI N/AIEA
GO:0000105GO-bp histidine biosynthetic process EnsemblGenomesN/AIEA
GO:0000105GO-bp histidine biosynthetic process JGI N/AIEA
GO:0008152GO-bp metabolic process EnsemblGenomesN/AIEA
GO:0008652GO-bp cellular amino acid biosynthetic process EnsemblGenomesN/AIEA
GO:0055114GO-bp oxidation-reduction process EnsemblGenomesN/AIEA
GO:0055114GO-bp oxidation-reduction process JGI N/AIEA
GO:0009507GO-cc chloroplast EnsemblGenomesN/AIEA
GO:0009536GO-cc plastid EnsemblGenomesN/AIEA
GO:0009570GO-cc chloroplast stroma EnsemblGenomesN/AIEA
GO:0004399GO-mf histidinol dehydrogenase activity EnsemblGenomesN/AIEA
GO:0004399GO-mf histidinol dehydrogenase activity JGI N/AIEA
GO:0008270GO-mf zinc ion binding EnsemblGenomesN/AIEA
GO:0008270GO-mf zinc ion binding JGI N/AIEA
GO:0016491GO-mf oxidoreductase activity EnsemblGenomesN/AIEA
GO:0046872GO-mf metal ion binding EnsemblGenomesN/AIEA
GO:0051287GO-mf NAD binding EnsemblGenomesN/AIEA
GO:0051287GO-mf NAD binding JGI N/AIEA
KOG2697 KOG Histidinol dehydrogenase JGI N/AIEA
PTHR21256Panther HISTIDINOL DEHYDROGENASE (HDH) JGI N/AIEA
PTHR21256:SF2Panther HISTIDINE BIOSYNTHESIS TRIFUNCTIONAL PROTEIN JGI N/AIEA
PF00815PFAM Histidinol dehydrogenase JGI N/AIEA
HISTSYN-PWYSoyCyc9 L-histidine biosynthesis Plant Metabolic Network ISS
GN7V-61942SoyCyc9-rxn Histidinol dehydrogenase Plant Metabolic Network ISS

Expression Patterns of Glyma.09g025600
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.09g025600 not represented in the dataset
Glyma.09g025600 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.09g025600
ParalogEvidenceComments
Glyma.15g131700 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.09g025600 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma09g02960 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.09g025600
>Glyma.09g025600.2 sequence-type=transcript locus=Glyma.09g025600 ID=Glyma.09g025600.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
TGATATCCCTACTTTCTAACCGGAGCGAAGAGACAAGCGAGCATAGCAGTGTGGTCTCTCTCACTCCAACTCCAACCACAGAGACAACAAATACAACAACGTTGTTTCCATGACAATGGAATCTGCGCTTACAGCTTCTAACTGGAACCGTTCTTTGATTCGGATTCGCCACACTAAGCCACGCTTCGGTGCAATTCGCCCCACAGCAATACGGTGCTCCATCAACTCGTATCGCTTGTCCAACCTCACTCCCTCTGAGCTTCAGAGCCTCAAGAGCCGACCCCGCATCGATTTCTCTTCCATTTTCGGTGTTGTTAATCCTATTGTCGATGATGTTCACAAAAGAGGGGATGCTGCGGTTAAAGAGTTCGTCTCTTCTTTCAAATCTTCTTATTTTCATCTATGAATATGATCTTGTTATTGTTTCATTCACTCTTGTTGTGTGTGGTTTCTTAACTTTTTCTTTTTTTGGTAACCATGTCAGTATGGAGTATCACTGACTTTGTCAATGACTAATCTCCGTCGGGTACCTGGCTGACCACCTTTAGTTGGGTTCTCCCCTCCCAACCATGTTTTTTCCATTCATGGGCTTGAACCCAAGACCTTGCTTAAGAAGACTCAGTCCAGTATCACTTGGATCAATGACTTGTTGGTTGTGCTTTCTTAACTTCTTTGCCTATGTAACTTCTTCACTTTTGTGTTTTGTAGATACACTTCAAAGTTTGATAAAGTTGAATTGGATAAGATAGTTGAGGTTGTCTCGGAGCTCCCTGACCCTGTGCTTGAACCGCCTATTAAGGAAGCTTTTGATGTCGCCTATGATAATATTTATGCATTTCATGCTGCTCAGAAGTCATCCGAGAAAAGTGTTGAGAACATGAAAGGAGTCCAATGCAAGAGAGTTGCAAGAAGTATTAACTCTGTGGGTCTTTATGTTCCAGGGGGAACTGCTGTATTACCTTCAACAGCTTTGATGCTTGCAGTTCCTGCACAAATTGCAGGATGTAAAACTATTGTTCTTGCAAATCCTCCAACTCGGGATGGCACTACATGCAAGGAGGTACTGTATTGTGCAAAGAAGGCTGGGGTGACTCACATTCTCAAAGCTGGAGGAGCACAGGCCATATCTGCCATGGCTTGGGGAACAGAAACTTGTCCAAAGGTTGAAAAGATTTTTGGCCCTGGAAACCAATATGTCACTGCTGCAAAAATGATACTTCAAAACAGTGAAGCCATGATTTCGATTGACATGCCGGCCGGTCCATCCGAAGTTTTGGTCATTGCAGACAAGCATGCAATTCCTTCCCATGTAGCTGCTGATTTGCTTTCCCAGGCAGAGCATGGCCCAGATAGTCAGGTTGTTCTTGTGATTGCTGGAGATGGTGTGGATCTGAATGCAATACAGGAGGAACTCAGCAAGCAGTGTGACAGTCTTCCAAGAGGCGAGTTTGCCTCTAAAGCTCTGAGCCATAGTTTTTTTGTGTATGCGTGTGATATGCTTGAGGCTATCAATTTCTCAAACTTATATGCACCTGAACATCTAATTATCAACGTGAAGGATGCAGAGAAGTGGGAGAGTTTTATTGAGAATGCAGGTTCTGTGTTCTTAGGGCCTTGGACTCCTGAGAGTGTTGGTGATTATGCAAGTGGGACAAACCATGTCCTTCCTACTTACGGTTATGCAAGAATGTATGGTGGTGTGTCATTGGACTCCTTCCTGAAGTACATAACTGTGCAGTCTCTCTCAGAGGAAGGTCTAAGAAGGCTTGGGCCATATGTAGCAACCATGGCTGAAGTTGAAGGCCTTGAAGCCCACAAGCGAGCAGTTACCTTGAGACTTCAGTACATAGAAGCCAGGCAGGTTTCAAGATGAGATGATGCTTCAACTCATTGTTCTCTTTATCTCTTGTAAGCTACTAGCTCTTAGTTTTTGGCAAGTCTAGGACCATTTGCTTGGCGAGATTACCTAGATTTAGGTGGTATTAGTAGCTAGAAGTTGCCATTTCAAGTTCATGTAACAATATGGATTCATATTCTGTAATAACAAACATATACAAGTGCCTAATTTGTCGGTGATCTTTGGAATAATGCATCCGATGTATTTGCTAGACTGTACTTTTTTCCTTCCTGATAAGCTTGCTCAAATGTACTTGTACTTGTTCACCATGGTTAAGAAAGTAT
Coding sequences of Glyma.09g025600
>Glyma.09g025600.1 sequence-type=CDS polypeptide=Glyma.09g025600.1.p locus=Glyma.09g025600 ID=Glyma.09g025600.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGACAATGGAATCTGCGCTTACAGCTTCTAACTGGAACCGTTCTTTGATTCGGATTCGCCACACTAAGCCACGCTTCGGTGCAATTCGCCCCACAGCAATACGGTGCTCCATCAACTCGTATCGCTTGTCCAACCTCACTCCCTCTGAGCTTCAGAGCCTCAAGAGCCGACCCCGCATCGATTTCTCTTCCATTTTCGGTGTTGTTAATCCTATTGTCGATGATGTTCACAAAAGAGGGGATGCTGCGGTTAAAGAATACACTTCAAAGTTTGATAAAGTTGAATTGGATAAGATAGTTGAGGTTGTCTCGGAGCTCCCTGACCCTGTGCTTGAACCGCCTATTAAGGAAGCTTTTGATGTCGCCTATGATAATATTTATGCATTTCATGCTGCTCAGAAGTCATCCGAGAAAAGTGTTGAGAACATGAAAGGAGTCCAATGCAAGAGAGTTGCAAGAAGTATTAACTCTGTGGGTCTTTATGTTCCAGGGGGAACTGCTGTATTACCTTCAACAGCTTTGATGCTTGCAGTTCCTGCACAAATTGCAGGATGTAAAACTATTGTTCTTGCAAATCCTCCAACTCGGGATGGCACTACATGCAAGGAGGTACTGTATTGTGCAAAGAAGGCTGGGGTGACTCACATTCTCAAAGCTGGAGGAGCACAGGCCATATCTGCCATGGCTTGGGGAACAGAAACTTGTCCAAAGGTTGAAAAGATTTTTGGCCCTGGAAACCAATATGTCACTGCTGCAAAAATGATACTTCAAAACAGTGAAGCCATGATTTCGATTGACATGCCGGCCGGTCCATCCGAAGTTTTGGTCATTGCAGACAAGCATGCAATTCCTTCCCATGTAGCTGCTGATTTGCTTTCCCAGGCAGAGCATGGCCCAGATAGTCAGGTTGTTCTTGTGATTGCTGGAGATGGTGTGGATCTGAATGCAATACAGGAGGAACTCAGCAAGCAGTGTGACAGTCTTCCAAGAGGCGAGTTTGCCTCTAAAGCTCTGAGCCATAGTTTTTTTGTGTATGCGTGTGATATGCTTGAGGCTATCAATTTCTCAAACTTATATGCACCTGAACATCTAATTATCAACGTGAAGGATGCAGAGAAGTGGGAGAGTTTTATTGAGAATGCAGGTTCTGTGTTCTTAGGGCCTTGGACTCCTGAGAGTGTTGGTGATTATGCAAGTGGGACAAACCATGTCCTTCCTACTTACGGTTATGCAAGAATGTATGGTGGTGTGTCATTGGACTCCTTCCTGAAGTACATAACTGTGCAGTCTCTCTCAGAGGAAGGTCTAAGAAGGCTTGGGCCATATGTAGCAACCATGGCTGAAGTTGAAGGCCTTGAAGCCCACAAGCGAGCAGTTACCTTGAGACTTCAGTACATAGAAGCCAGGCAGGTTTCAAGATGA

>Glyma.09g025600.2 sequence-type=CDS polypeptide=Glyma.09g025600.2.p locus=Glyma.09g025600 ID=Glyma.09g025600.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGAAAGGAGTCCAATGCAAGAGAGTTGCAAGAAGTATTAACTCTGTGGGTCTTTATGTTCCAGGGGGAACTGCTGTATTACCTTCAACAGCTTTGATGCTTGCAGTTCCTGCACAAATTGCAGGATGTAAAACTATTGTTCTTGCAAATCCTCCAACTCGGGATGGCACTACATGCAAGGAGGTACTGTATTGTGCAAAGAAGGCTGGGGTGACTCACATTCTCAAAGCTGGAGGAGCACAGGCCATATCTGCCATGGCTTGGGGAACAGAAACTTGTCCAAAGGTTGAAAAGATTTTTGGCCCTGGAAACCAATATGTCACTGCTGCAAAAATGATACTTCAAAACAGTGAAGCCATGATTTCGATTGACATGCCGGCCGGTCCATCCGAAGTTTTGGTCATTGCAGACAAGCATGCAATTCCTTCCCATGTAGCTGCTGATTTGCTTTCCCAGGCAGAGCATGGCCCAGATAGTCAGGTTGTTCTTGTGATTGCTGGAGATGGTGTGGATCTGAATGCAATACAGGAGGAACTCAGCAAGCAGTGTGACAGTCTTCCAAGAGGCGAGTTTGCCTCTAAAGCTCTGAGCCATAGTTTTTTTGTGTATGCGTGTGATATGCTTGAGGCTATCAATTTCTCAAACTTATATGCACCTGAACATCTAATTATCAACGTGAAGGATGCAGAGAAGTGGGAGAGTTTTATTGAGAATGCAGGTTCTGTGTTCTTAGGGCCTTGGACTCCTGAGAGTGTTGGTGATTATGCAAGTGGGACAAACCATGTCCTTCCTACTTACGGTTATGCAAGAATGTATGGTGGTGTGTCATTGGACTCCTTCCTGAAGTACATAACTGTGCAGTCTCTCTCAGAGGAAGGTCTAAGAAGGCTTGGGCCATATGTAGCAACCATGGCTGAAGTTGAAGGCCTTGAAGCCCACAAGCGAGCAGTTACCTTGAGACTTCAGTACATAGAAGCCAGGCAGGTTTCAAGATGA
Predicted protein sequences of Glyma.09g025600
>Glyma.09g025600.1.p sequence-type=predicted peptide transcript=Glyma.09g025600.1 locus=Glyma.09g025600 ID=Glyma.09g025600.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MTMESALTASNWNRSLIRIRHTKPRFGAIRPTAIRCSINSYRLSNLTPSELQSLKSRPRIDFSSIFGVVNPIVDDVHKRGDAAVKEYTSKFDKVELDKIVEVVSELPDPVLEPPIKEAFDVAYDNIYAFHAAQKSSEKSVENMKGVQCKRVARSINSVGLYVPGGTAVLPSTALMLAVPAQIAGCKTIVLANPPTRDGTTCKEVLYCAKKAGVTHILKAGGAQAISAMAWGTETCPKVEKIFGPGNQYVTAAKMILQNSEAMISIDMPAGPSEVLVIADKHAIPSHVAADLLSQAEHGPDSQVVLVIAGDGVDLNAIQEELSKQCDSLPRGEFASKALSHSFFVYACDMLEAINFSNLYAPEHLIINVKDAEKWESFIENAGSVFLGPWTPESVGDYASGTNHVLPTYGYARMYGGVSLDSFLKYITVQSLSEEGLRRLGPYVATMAEVEGLEAHKRAVTLRLQYIEARQVSR*

>Glyma.09g025600.2.p sequence-type=predicted peptide transcript=Glyma.09g025600.2 locus=Glyma.09g025600 ID=Glyma.09g025600.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MKGVQCKRVARSINSVGLYVPGGTAVLPSTALMLAVPAQIAGCKTIVLANPPTRDGTTCKEVLYCAKKAGVTHILKAGGAQAISAMAWGTETCPKVEKIFGPGNQYVTAAKMILQNSEAMISIDMPAGPSEVLVIADKHAIPSHVAADLLSQAEHGPDSQVVLVIAGDGVDLNAIQEELSKQCDSLPRGEFASKALSHSFFVYACDMLEAINFSNLYAPEHLIINVKDAEKWESFIENAGSVFLGPWTPESVGDYASGTNHVLPTYGYARMYGGVSLDSFLKYITVQSLSEEGLRRLGPYVATMAEVEGLEAHKRAVTLRLQYIEARQVSR*






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