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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A previous version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G03300.1 | AT | dicer-like 2 | JGI | N/A | IEA |
| GO:0006396 | GO-bp | RNA processing | EnsemblGenomes | N/A | IEA |
| GO:0006396 | GO-bp | RNA processing | JGI | N/A | IEA |
| GO:0030422 | GO-bp | production of siRNA involved in RNA interference | EnsemblGenomes | N/A | IEA |
| GO:0031047 | GO-bp | gene silencing by RNA | EnsemblGenomes | N/A | IEA |
| GO:0090501 | GO-bp | RNA phosphodiester bond hydrolysis | EnsemblGenomes | N/A | IEA |
| GO:0090502 | GO-bp | RNA phosphodiester bond hydrolysis, endonucleolytic | EnsemblGenomes | N/A | IEA |
| GO:0005634 | GO-cc | nucleus | EnsemblGenomes | N/A | IEA |
| GO:0005737 | GO-cc | cytoplasm | EnsemblGenomes | N/A | IEA |
| GO:0016442 | GO-cc | RISC complex | EnsemblGenomes | N/A | IEA |
| GO:0003676 | GO-mf | nucleic acid binding | EnsemblGenomes | N/A | IEA |
| GO:0003676 | GO-mf | nucleic acid binding | JGI | N/A | IEA |
| GO:0003677 | GO-mf | DNA binding | JGI | N/A | IEA |
| GO:0003723 | GO-mf | RNA binding | EnsemblGenomes | N/A | IEA |
| GO:0003723 | GO-mf | RNA binding | JGI | N/A | IEA |
| GO:0004386 | GO-mf | helicase activity | JGI | N/A | IEA |
| GO:0004525 | GO-mf | ribonuclease III activity | EnsemblGenomes | N/A | IEA |
| GO:0004525 | GO-mf | ribonuclease III activity | JGI | N/A | IEA |
| GO:0005515 | GO-mf | protein binding | EnsemblGenomes | N/A | IEA |
| GO:0005515 | GO-mf | protein binding | JGI | N/A | IEA |
| GO:0005524 | GO-mf | ATP binding | EnsemblGenomes | N/A | IEA |
| GO:0005524 | GO-mf | ATP binding | JGI | N/A | IEA |
| GO:0008026 | GO-mf | ATP-dependent helicase activity | JGI | N/A | IEA |
| GO:0016787 | GO-mf | hydrolase activity | JGI | N/A | IEA |
| GO:0016891 | GO-mf | endoribonuclease activity, producing 5'-phosphomonoesters | EnsemblGenomes | N/A | IEA |
| GO:0016891 | GO-mf | endoribonuclease activity, producing 5'-phosphomonoesters | JGI | N/A | IEA |
| KOG0701 | KOG | dsRNA-specific nuclease Dicer and related ribonucleases | JGI | N/A | IEA |
| PTHR14950 | Panther | HELICASE-RELATED | JGI | N/A | IEA |
| PTHR14950:SF4 | Panther | JGI | N/A | IEA | |
| PF00270 | PFAM | DEAD/DEAH box helicase | JGI | N/A | IEA |
| PF00271 | PFAM | Helicase conserved C-terminal domain | JGI | N/A | IEA |
| PF00636 | PFAM | Ribonuclease III domain | JGI | N/A | IEA |
| PF02170 | PFAM | PAZ domain | JGI | N/A | IEA |
| PF03368 | PFAM | Dicer dimerisation domain | JGI | N/A | IEA |
| Locus | Gene Symbol | Protein Name |
|---|---|---|
| DCL2A | endoribonuclease dicer-like 2a |
|
Glyma.09g025400 not represented in the dataset |
Glyma.09g025400 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.
Gene information in GlycineMine developed by LIS.
Gene families from PhyloGenes.
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma.15g131500 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma09g02930 | Wm82.a1.v1.1 | IGC | As supplied by JGI |
>Glyma.09g025400.1 sequence-type=CDS polypeptide=Glyma.09g025400.1.p locus=Glyma.09g025400 ID=Glyma.09g025400.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGGAAGAAGTACTCCCAGTGGAAATGGATTCCAATACCCAGCAGCAGCAGAAGGTTATTAGTGCTGATGTTCTTTCGTTTGCCAGAAGCTATCAACTTGAAGCATTGGACAATGCTATCCGTGAGAATACCATTGTCTACTTGGAGACTGGTTCTGGCAAGACTTTGATAGCCGTCATGCTTCTTCGAAGCTATGCTCATCATCTGCGAAAGCCTTCTCCTCAAATTGCAGTGTTCTTGGTTCCCAAAGTTGTGTTGGTCTCTCAACAAGCCGAAGCCGTGAAAAAACACACTGATTTAAAAGTGGGATTGTATTGGGGAGATATGGGAATTGACTTCTGGGATGCTGCTACCTGGAAACAGGAAGTACAGAAATATGAGGTGTTTGTCATGACTCCTGCAATATTGCTGAATTGCTTGAGGCATAGCTTCTTGAAACTGAATTTGATAAAGGTTTTGATAATGGATGAATGCCATCATGCTAGGGGTAAACACCCTTATGCTAGCATCATGACTGAGTTTTATCATCACCAATTAAATTCTGGTATCTCTGACCTCCCTCGAATTTTTGGGATGACTGCATCTCCAATTAAGTCAAAAGTTGGAAATTGTGAATTATCCTGGTCAGAGAATATTCGGAAACTAATGACTCTAATGCATTCAAAGGTATATACATGTGTAAGTGAAGCTGTCCTCACAGAGTTCATACCAACATCAACACCAAAATTCAAGTTTTACCAGGGCAATGAAGTTCAATCTGTATTATTTGAAGATTTAGCATTTAAACTGAAGATGTTAAAAGAGCAGCATGAATCCAATCTAAAAAGTTCAGATTTCACTAAATCAGCAGCTGAGTTTGCACGAAGAAGAACAAAAAAGATTTTTTCTGCTTTAATATTTTGCCTGGATGAGCTTGGTGTTTGGTTGGCTTTGAAGGCTGCAGAATCTTTATCTTCTAATGATATTCAATTATTTTCATGGGGACATTCTGGGGATACAGTTGTTAAAAACTTTATTTCAGCTGGTGTGCAAACACTCAAAACTTACTTACCATGTGGTCCTCAGTGGTCAATTGGTGACAATATTAAATATGATGTGGAGATGGAGCTGTTATCCTCCAAAGTTTGCTGTCTTATTGACTCTATACTTGAGTACAGGGGTTTGACTGACATGAGATGCATAATTTTTGTGGAAAGGGTCATTACAGCCGTTGTCCTTCGGGATCTATTAAATACCTTGCTTCCAAAATACAATAGCTGGAAGACTAAATTTATTGCAGGACAAAATTTTGGATTGCAAAATCAGTCTAGGAAAAAACAAAATGAAATCGTGGAAGAATTTCGAATGGGATTGGTCAATATCATTGTTGCAACATCAATTCTTGAAGAGGGTTTAGATGTTGAAAGTTGCAATTTAGTTATTAGATTTGATCCATGTCACACAGTGTGTAGTTTCATACAGTCCCGAGGACGTGCCAGAATGCAAAATTCAGATTATATATTAATGGTTAAGAGTGGGGATTCAGTTACATGTTCTCGACTAGCGAAATACCTTGCTAGCGGGGATATTATGAGAAAGGAGTCATTGCGCCATTCTTCCCTTCCATGTGATCCTCTTGAAGAAGATAGATTTGACAAGGAAACTTATCGCGTTGCAAGCACTGAAGCCTTTGCAAATCTTAGTTCTAGCATTAGTTTGATACACTTGTATTGCTCACGGCTCCCTGCAGATGGGTACTTTAAACCAACTCTGAGGTGGGACAAAGAGACTGGAACATTGTATCTTCCCAAGAGCTGCCCTCTACAGCCTATTCGTGTAGAAGGAGATAAAAAAATCTTAAAGAATATCGCATGCCTTGAAGCATGTAAACAACTTCATAAGATTGGAGCTTTGTCAGATAATCTTGTTCCTGATATTGTCATGGAAGAAGCAGAGGTGGAGGAATTAGGGAATGAACCTTATGATGAAAACCAACCAACTTTTGTCCCATTTGGATTGGTAAATTCTGTGTCAAATAATAGTCAAACGGTCTATCATTGTTATTTCATGGAATTCAATAACAAATTTAGCTATGATGTATCTGTCCAAGATATTTTTCTTCTCATGCGAATTGAGCTCGATCCAGAAATTGGATGCATGCAATTTGATATGGGTTTTGACAGAGGTAGCTTGTCGGTAAACTTTAGATACAAAGGAACCATTAATCTTTCGCCTGATCAGGTTCTTTTGTGTAAAAAATTCCAAGTTACTATACTTAGAATTCTAATAGATCATGATATGAATAAGTTGACTGCTGGTTTGGACAGATGCTATTTGGAAGATGATCTTGAGATTGATTATCTTCTGCTTCCAGCTATGGGTAAAGGGAAATATACAGCTATTAATTGGTTAGCTGTTAATTCTGTAAATCCATCTGAAGTTAGCTGTAAGTATCATGAACCCCACATAAGGACAAAAAGTGGTTTAGTTTGCAGTTGTAAACTACAAAATGCATTGGTTTGTACTTCCCACCCTATTGGTAAGATTAGCTTCTATATTGCCACCGGTACAATGGAATTGGATGGAAATTCACCTATGGAACTAAGGGGTGGTGGGGTTACTACGTACAAGAAGTACTATGAACAACACCATGGCATTCAATTGCAATTTGAACATCAACGACTACTTAAAGCAAGGCACATTTTTCAAGTTAAAAATCACTGTCATGGACGCAAACAAGGGAAGGAAGGAGAAGTAAGCAAGGCCTTTGTTGAATTACCTCCTGAACTGTGTTCGATAGTCATGATGCCGATATCAGATAGTCTCATTTATTCCTACTCATTTATTCCGTCAATCATGCATCGGTTTGAATCATTGCTTGGAGCTTTCAACTTAAAAAAGATGCATTTGGATCATTGTGCACGGAATGAAATTCAAACAATCAAGGTGTTGGAAGCAATCACAACGAAAAGGTGCAAAGAGGCCTTTCATTATGAGTCTCTGGAGACTCTTGGTGATTCTTTTTTAAAATATGCTGCGAGTCAACAGCTGTTTAAAACCTATCATAATCACCATGAAGGTCTCCTTAGTCTGAAGAGGGAAAAGATCATTTCTAATGCTGCCCTCTGTAAGTTGGGGTGCAGTTCTGGACTTCCGGGTTTCATACGGAATGAGCCTTTTGATCCTAATACCTGGATTATTCCTGGTGATAAGCCTAGAAGTTTTAAATTGAAAGAGTTGGTTGCCAAGGGGAAAACAATTTATGTTAGTGGAAAAAGAAAATTAAGACAGAAGATTGTTGCTGATGTTGTCGAGGCATTAATTGGTGCCTTCCTCAGCACTGGTGGTGAAAAGGCTGCATTGTTGTTTATGGATTGGGTTGGTATTAAAGTGAGTTTTAATAAAATACCGTATGACAGACACTTTGACATTCAACCGGAGAAGCTGGTAAATGTCAGTTTTCTAGAATCGCAATTAAATTACTCATTCCATGACCGTTCCCTTTTAGTGGAAGCTGTGACCCATGGTTCATACATGCTGCCTGAAGTTCCTAGATGTTATCAGCGACTAGAATTTCTAGGAGATTCAGTATTGGATTATCTGATTACTTGGCATTTGTACAATAAATACCCTGGCATGACACCTGGGCAGTTAACTGACATGAGGTCAGCTTCGGTGAATAATGATTGTTATGCATGGTCCGCCATTAAGCATGGGTTGCACAAACATGTACTCCATGCCTCACAAGAACTGCATATGCATGTTTCTGCTACACTCAACAAATTTGATAAGCTATCTTCATTGTCCACTTTTGGTTACGAGGCAGAGACATCACTCCCTAAGGTACTTGGAGACATTGTAGAGTCTCTGGCTGGAGCAATTCTTGTTGATTCAGGATACAACAAGGAGGTTGTGTGGCAAAGCATAAGGCCACTTTTGGAACCCCTTGTGACACCAGAAACATTAAAGCTCCATCCCATCCGAGAGTTGAATGAGCTATGCCAAAAAAGAAGTTATAAGATTATACTAGAGGACGTGTCCCGCAAAGATGGTCTGACTTATTATAGAATGGAGGTAGAAGCTGATGGGATCATTCACAAGTACGAGTATAAAGGTGATGCTCTTAGGGACACAGCCAAGAAGATAGTCTGCAAGGAAATTTTGAATTCCTTGAAGGATGGCGGTGCTCATAAGGACACAGCCAAGAAGATAGTCTGCGAGGAAAAATTAAATTCCTTGAAGGAAGGAGAATCAAATGGTGCATAA
>Glyma.09g025400.1.p sequence-type=predicted peptide transcript=Glyma.09g025400.1 locus=Glyma.09g025400 ID=Glyma.09g025400.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 MEEVLPVEMDSNTQQQQKVISADVLSFARSYQLEALDNAIRENTIVYLETGSGKTLIAVMLLRSYAHHLRKPSPQIAVFLVPKVVLVSQQAEAVKKHTDLKVGLYWGDMGIDFWDAATWKQEVQKYEVFVMTPAILLNCLRHSFLKLNLIKVLIMDECHHARGKHPYASIMTEFYHHQLNSGISDLPRIFGMTASPIKSKVGNCELSWSENIRKLMTLMHSKVYTCVSEAVLTEFIPTSTPKFKFYQGNEVQSVLFEDLAFKLKMLKEQHESNLKSSDFTKSAAEFARRRTKKIFSALIFCLDELGVWLALKAAESLSSNDIQLFSWGHSGDTVVKNFISAGVQTLKTYLPCGPQWSIGDNIKYDVEMELLSSKVCCLIDSILEYRGLTDMRCIIFVERVITAVVLRDLLNTLLPKYNSWKTKFIAGQNFGLQNQSRKKQNEIVEEFRMGLVNIIVATSILEEGLDVESCNLVIRFDPCHTVCSFIQSRGRARMQNSDYILMVKSGDSVTCSRLAKYLASGDIMRKESLRHSSLPCDPLEEDRFDKETYRVASTEAFANLSSSISLIHLYCSRLPADGYFKPTLRWDKETGTLYLPKSCPLQPIRVEGDKKILKNIACLEACKQLHKIGALSDNLVPDIVMEEAEVEELGNEPYDENQPTFVPFGLVNSVSNNSQTVYHCYFMEFNNKFSYDVSVQDIFLLMRIELDPEIGCMQFDMGFDRGSLSVNFRYKGTINLSPDQVLLCKKFQVTILRILIDHDMNKLTAGLDRCYLEDDLEIDYLLLPAMGKGKYTAINWLAVNSVNPSEVSCKYHEPHIRTKSGLVCSCKLQNALVCTSHPIGKISFYIATGTMELDGNSPMELRGGGVTTYKKYYEQHHGIQLQFEHQRLLKARHIFQVKNHCHGRKQGKEGEVSKAFVELPPELCSIVMMPISDSLIYSYSFIPSIMHRFESLLGAFNLKKMHLDHCARNEIQTIKVLEAITTKRCKEAFHYESLETLGDSFLKYAASQQLFKTYHNHHEGLLSLKREKIISNAALCKLGCSSGLPGFIRNEPFDPNTWIIPGDKPRSFKLKELVAKGKTIYVSGKRKLRQKIVADVVEALIGAFLSTGGEKAALLFMDWVGIKVSFNKIPYDRHFDIQPEKLVNVSFLESQLNYSFHDRSLLVEAVTHGSYMLPEVPRCYQRLEFLGDSVLDYLITWHLYNKYPGMTPGQLTDMRSASVNNDCYAWSAIKHGLHKHVLHASQELHMHVSATLNKFDKLSSLSTFGYEAETSLPKVLGDIVESLAGAILVDSGYNKEVVWQSIRPLLEPLVTPETLKLHPIRELNELCQKRSYKIILEDVSRKDGLTYYRMEVEADGIIHKYEYKGDALRDTAKKIVCKEILNSLKDGGAHKDTAKKIVCEEKLNSLKEGESNGA*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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