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Report for Sequence Feature Glyma.09g020000

Feature Type:gene_model
Chromosome:Gm09
Start:1578424
stop:1583527
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.09g020000
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G19670.1AT RING/U-box superfamily protein JGI N/AIEA
GO:0000209GO-bp protein polyubiquitination EnsemblGenomesN/AIEA
GO:0006278GO-bp RNA-dependent DNA biosynthetic process EnsemblGenomesN/AIEA
GO:0016567GO-bp protein ubiquitination EnsemblGenomesN/AIEA
GO:0032436GO-bp positive regulation of proteasomal ubiquitin-dependent protein catabolic process EnsemblGenomesN/AIEA
GO:0000151GO-cc ubiquitin ligase complex EnsemblGenomesN/AIEA
GO:0005737GO-cc cytoplasm EnsemblGenomesN/AIEA
GO:0003676GO-mf nucleic acid binding EnsemblGenomesN/AIEA
GO:0003964GO-mf RNA-directed DNA polymerase activity EnsemblGenomesN/AIEA
GO:0004842GO-mf ubiquitin-protein transferase activity EnsemblGenomesN/AIEA
GO:0008270GO-mf zinc ion binding JGI N/AIEA
GO:0016740GO-mf transferase activity EnsemblGenomesN/AIEA
GO:0031624GO-mf ubiquitin conjugating enzyme binding EnsemblGenomesN/AIEA
GO:0046872GO-mf metal ion binding EnsemblGenomesN/AIEA
GO:0061630GO-mf ubiquitin protein ligase activity EnsemblGenomesN/AIEA
KOG1812 KOG Predicted E3 ubiquitin ligase JGI N/AIEA
PTHR11685Panther RBR FAMILY (RING FINGER AND IBR DOMAIN-CONTAINING) JGI N/AIEA
PTHR11685:SF18Panther SUBFAMILY NOT NAMED JGI N/AIEA
PF01485PFAM IBR domain JGI N/AIEA

Proteins Associated with Glyma.09g020000
LocusGene SymbolProtein Name
RTRP3 reverse transcriptase-like domain-containing RBR protein

Expression Patterns of Glyma.09g020000
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.09g020000
ParalogEvidenceComments
Glyma.15g126500 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.09g020000 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma09g02340 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.09g020000
>Glyma.09g020000.2 sequence-type=transcript locus=Glyma.09g020000 ID=Glyma.09g020000.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
TTGTCGTCTTCTAGGTTATTAGGGTTTTTATTCTGTTGCAGAGACAGTGGTTGAGAATCACTGCTCAAAAGAAGAAGAATAATAGTACCAAATTCCAACCAGATAAGGAGTGTGGAATTTCGAAGTTTCACTTCTTTCTTTTACTACTACTTGATACCCTTTTCCTTTCTCTCTCTTCTCTTATTCTCGTTGTTTAGTTACCTACCGTGGATCAAAGTCAATACCCTACCTCGCTCCtttttttttttttttttaatttgatttcttttGGGTTTAGCAGCCTCCCCAAAAGGGTTATTTTATTTTGTTATGACATTCTGTAATTTCCCCCAAAAATTAATTTTTTAGATCGATTCGTTGATGGGTCATGCTGGGGTGTTGTCAATCGTTGTAATGGCTAATTGAAGTTCTGTGGGTGTTTTGTTGGGAAAATGGGGGATCAAGGTGTTAATGTTGGGAGAGAGGAAGAGGAAGATGAGTTTTGCAGTTGTTGTGGAGATGAAGATGAGGAAGTGTGGAAAGAGACTGAGGAACCTGTTGTGGAAAAAGGGTTGAAGGATGAGCTTGATGAATTTTCAGTGAAAATGTTCTTTAAGGGGTTGTCAATGGCAGGGGTCGAAAATTTAAGTTCTGGGTTTTCAGGGATTGGAGTGTTCATGGAAAGGTCTTCAGGTCTACCTGCTATAAGGGTGCAGAAAAAGCTTGACTTTTATGCGGAGGAGTCTGTGGTTGACTATTTGGCACTCTTGGATGGGTTGCTGGAAGCTGTGCAGAAAAAGATCCGCAGGGTTTTTGCTTTCACTGATTCTGAGTTGTTGCATGATCAGATAACATTTGGGAAAAAATTGGAGATGCCTCTTTTGACGGCACTGCGAGAAAGGATTCTTGAACTTGCCAATAATTTTGAAGATTTTGTTTTAAAGCTTATACCTTCTAGTGATCTTGAGCAGCCACTGCATTTGGCCAAAGTAGCTATTGGACTTGTTACTTTCCCTGTAAATGATGAGAGATTGCTTAAGAACTGTTCTATTTGCTGTGATGACAAGCCAGTGCCAATTATGATTACCTTAAAATGTTCTCACACATTCTGTTCACATTGCTTGAGGGCCTATGCTGATGGTAAAGTACAATCTTGTCAAGTCCCTATAAGATGCCCTCAACCAGGATGCAAGTATTGCACATCTGTAACTGAGTGCAGGTCTTTTCTTCCATTCACCTCCTTTGAATCTCTGGAGAAATCCCTTTCTGAAGCAAATATTGGCTGTTCAGATAGAATTTATTGTCCATTTCCAAATTGCTCTGTTCTCCTTGATCCTCATGAATGTTCATCAGCAAGGGACTGTTCATCTAGTCAGTCTGACAACTCTTGTATCGAGTGTCCTGTTTGTCGGAGGTTTATCTGTGTGGATTGTAAGGTTCCTTGGCATTCTTCTATGAGTTGTGTAGAATACCAGAATCTGCCAGAGGAGAGGGATGCTTCTGACATTACCTTTCACCGTCTTGCTCAGAATAAAAGGTGGAAGCGTTGTCAGCAGTGTCGTAGAACGATTGAGCTTACTCAAGGCTGCTACCACATGACATGCTGGACCGAACCTCTATGTCTGTTAAATGAAAACTTTGGAGAAACCCTTGAAAACATTGGGCTTTGAGCTCAAATGTGGATCAGTTGGACCTCTCTTTGGCTTTCCGGTGGATATATATGTCTTGATTTTTCTGCCAGCGTGTAGCTCATTGCATTCAACATAGCCCATTGGCCTTGTGACGGTGGGGTGTCCTGTTTGCTTGTAATGATTAACCTAAATCCATGGGCTTTTTTTTCGCGTCCTCTTCATTCAAAGAAAGATGGTAGTTGGAGATGTTAGAATGGCTGGTGATCAACAATAAAACTGTAACCAGCCAAacaataaccctctcctataccttcacatagtgaggagccttgggacaccagagta
Coding sequences of Glyma.09g020000
>Glyma.09g020000.1 sequence-type=CDS polypeptide=Glyma.09g020000.1.p locus=Glyma.09g020000 ID=Glyma.09g020000.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGGGGATCAAGGTGTTAATGTTGGGAGAGAGGAAGAGGAAGATGAGTTTTGCAGTTGTTGTGGAGATGAAGATGAGGAAGTGTGGAAAGAGACTGAGGAACCTGTTGTGGAAAAAGGGTTGAAGGATGAGCTTGATGAATTTTCAGTGAAAATGTTCTTTAAGGGGTTGTCAATGGCAGGGGTCGAAAATTTAAGTTCTGGGTTTTCAGGGATTGGAGTGTTCATGGAAAGGTCTTCAGGTCTACCTGCTATAAGGGTGCAGAAAAAGCTTGACTTTTATGCGGAGGAGTCTGTGGTTGACTATTTGGCACTCTTGGATGGGTTGCTGGAAGCTGTGCAGAAAAAGATCCGCAGGGTTTTTGCTTTCACTGATTCTGAGTTGTTGCATGATCAGATAACATTTGGGAAAAAATTGGAGATGCCTCTTTTGACGGCACTGCGAGAAAGGATTCTTGAACTTGCCAATAATTTTGAAGATTTTGTTTTAAAGCTTATACCTTCTAGTGATCTTGAGCAGCCACTGCATTTGGCCAAAGTAGCTATTGGACTTGTTACTTTCCCTGTAAATGATGAGAGATTGCTTAAGAACTGTTCTATTTGCTGTGATGACAAGCCAGTGCCAATTATGATTACCTTAAAATGTTCTCACACATTCTGTTCACATTGCTTGAGGGCCTATGCTGATGGTAAAGTACAATCTTGTCAAGTCCCTATAAGATGCCCTCAACCAGGATGCAAGTATTGCACATCTGTAACTGAGTGCAGGTCTTTTCTTCCATTCACCTCCTTTGAATCTCTGGAGAAATCCCTTTCTGAAGCAAATATTGGCTGTTCAGATAGAATTTATTGTCCATTTCCAAATTGCTCTGTTCTCCTTGATCCTCATGAATGTTCATCAGCAAGGGACTGTTCATCTAGTCAGTCTGACAACTCTTGTATCGAGTGTCCTGTTTGTCGGAGGTTTATCTGTGTGGATTGTAAGGTTCCTTGGCATTCTTCTATGAGTTGTGTAGAATACCAGAATCTGCCAGAGGAGAGGGATGCTTCTGACATTACCTTTCACCGTCTTGCTCAGAATAAAAGGTGGAAGCGTTGTCAGCAGTGTCGTAGAACGATTGAGCTTACTCAAGGCTGCTACCACATGACATGCTGGTGTGGACATGAGTTTTGCTATTCATGTGGTGGGGAGTACCGAGAAGGGCAACAAACATGCCAGTGTGCATATTGGGATGAAGATAACTCTGATGACTCAGTGGCGCACTCTCTTCAAGAATCAGAACAATGGGCATGGGAGACATTCAATTCTCTCTCCATGATTGTGGATGCATACTCGGACCAAGAACGATCGCAGCTTGCTCTTATTCAAAGGTTCCTAACTGGGGGTTTCAGTCTCAGTGACCATAATCCTTACCAATCTCCTCCTCGCAGTACAGAGTCCTATGTAGACCCCATGAAGGATCTACATCAACTTCCATGGCTAGAGAGGTTTGTGTCTGTGATTAGTGACAACTACTATGAGGATTACATTCAATGA

>Glyma.09g020000.2 sequence-type=CDS polypeptide=Glyma.09g020000.2.p locus=Glyma.09g020000 ID=Glyma.09g020000.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGGGGATCAAGGTGTTAATGTTGGGAGAGAGGAAGAGGAAGATGAGTTTTGCAGTTGTTGTGGAGATGAAGATGAGGAAGTGTGGAAAGAGACTGAGGAACCTGTTGTGGAAAAAGGGTTGAAGGATGAGCTTGATGAATTTTCAGTGAAAATGTTCTTTAAGGGGTTGTCAATGGCAGGGGTCGAAAATTTAAGTTCTGGGTTTTCAGGGATTGGAGTGTTCATGGAAAGGTCTTCAGGTCTACCTGCTATAAGGGTGCAGAAAAAGCTTGACTTTTATGCGGAGGAGTCTGTGGTTGACTATTTGGCACTCTTGGATGGGTTGCTGGAAGCTGTGCAGAAAAAGATCCGCAGGGTTTTTGCTTTCACTGATTCTGAGTTGTTGCATGATCAGATAACATTTGGGAAAAAATTGGAGATGCCTCTTTTGACGGCACTGCGAGAAAGGATTCTTGAACTTGCCAATAATTTTGAAGATTTTGTTTTAAAGCTTATACCTTCTAGTGATCTTGAGCAGCCACTGCATTTGGCCAAAGTAGCTATTGGACTTGTTACTTTCCCTGTAAATGATGAGAGATTGCTTAAGAACTGTTCTATTTGCTGTGATGACAAGCCAGTGCCAATTATGATTACCTTAAAATGTTCTCACACATTCTGTTCACATTGCTTGAGGGCCTATGCTGATGGTAAAGTACAATCTTGTCAAGTCCCTATAAGATGCCCTCAACCAGGATGCAAGTATTGCACATCTGTAACTGAGTGCAGGTCTTTTCTTCCATTCACCTCCTTTGAATCTCTGGAGAAATCCCTTTCTGAAGCAAATATTGGCTGTTCAGATAGAATTTATTGTCCATTTCCAAATTGCTCTGTTCTCCTTGATCCTCATGAATGTTCATCAGCAAGGGACTGTTCATCTAGTCAGTCTGACAACTCTTGTATCGAGTGTCCTGTTTGTCGGAGGTTTATCTGTGTGGATTGTAAGGTTCCTTGGCATTCTTCTATGAGTTGTGTAGAATACCAGAATCTGCCAGAGGAGAGGGATGCTTCTGACATTACCTTTCACCGTCTTGCTCAGAATAAAAGGTGGAAGCGTTGTCAGCAGTGTCGTAGAACGATTGAGCTTACTCAAGGCTGCTACCACATGACATGCTGGACCGAACCTCTATGTCTGTTAAATGAAAACTTTGGAGAAACCCTTGAAAACATTGGGCTTTGA
Predicted protein sequences of Glyma.09g020000
>Glyma.09g020000.1.p sequence-type=predicted peptide transcript=Glyma.09g020000.1 locus=Glyma.09g020000 ID=Glyma.09g020000.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MGDQGVNVGREEEEDEFCSCCGDEDEEVWKETEEPVVEKGLKDELDEFSVKMFFKGLSMAGVENLSSGFSGIGVFMERSSGLPAIRVQKKLDFYAEESVVDYLALLDGLLEAVQKKIRRVFAFTDSELLHDQITFGKKLEMPLLTALRERILELANNFEDFVLKLIPSSDLEQPLHLAKVAIGLVTFPVNDERLLKNCSICCDDKPVPIMITLKCSHTFCSHCLRAYADGKVQSCQVPIRCPQPGCKYCTSVTECRSFLPFTSFESLEKSLSEANIGCSDRIYCPFPNCSVLLDPHECSSARDCSSSQSDNSCIECPVCRRFICVDCKVPWHSSMSCVEYQNLPEERDASDITFHRLAQNKRWKRCQQCRRTIELTQGCYHMTCWCGHEFCYSCGGEYREGQQTCQCAYWDEDNSDDSVAHSLQESEQWAWETFNSLSMIVDAYSDQERSQLALIQRFLTGGFSLSDHNPYQSPPRSTESYVDPMKDLHQLPWLERFVSVISDNYYEDYIQ*

>Glyma.09g020000.2.p sequence-type=predicted peptide transcript=Glyma.09g020000.2 locus=Glyma.09g020000 ID=Glyma.09g020000.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MGDQGVNVGREEEEDEFCSCCGDEDEEVWKETEEPVVEKGLKDELDEFSVKMFFKGLSMAGVENLSSGFSGIGVFMERSSGLPAIRVQKKLDFYAEESVVDYLALLDGLLEAVQKKIRRVFAFTDSELLHDQITFGKKLEMPLLTALRERILELANNFEDFVLKLIPSSDLEQPLHLAKVAIGLVTFPVNDERLLKNCSICCDDKPVPIMITLKCSHTFCSHCLRAYADGKVQSCQVPIRCPQPGCKYCTSVTECRSFLPFTSFESLEKSLSEANIGCSDRIYCPFPNCSVLLDPHECSSARDCSSSQSDNSCIECPVCRRFICVDCKVPWHSSMSCVEYQNLPEERDASDITFHRLAQNKRWKRCQQCRRTIELTQGCYHMTCWTEPLCLLNENFGETLENIGL*






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