SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma.09g019800

Feature Type:gene_model
Chromosome:Gm09
Start:1540660
stop:1547761
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.09g019800
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G04760.1AT vesicle-associated membrane protein 726 JGI N/AIEA
GO:0006887GO-bp exocytosis EnsemblGenomesN/AIEA
GO:0006906GO-bp vesicle fusion EnsemblGenomesN/AIEA
GO:0016192GO-bp vesicle-mediated transport EnsemblGenomesN/AIEA
GO:0016192GO-bp vesicle-mediated transport JGI N/AIEA
GO:0016020GO-cc membrane EnsemblGenomesN/AIEA
GO:0016021GO-cc integral component of membrane EnsemblGenomesN/AIEA
GO:0016021GO-cc integral component of membrane JGI N/AIEA
GO:0031201GO-cc SNARE complex EnsemblGenomesN/AIEA
GO:0000149GO-mf SNARE binding EnsemblGenomesN/AIEA
GO:0005484GO-mf SNAP receptor activity EnsemblGenomesN/AIEA
KOG0859 KOG Synaptobrevin/VAMP-like protein JGI N/AIEA
PTHR21136Panther SNARE PROTEINS JGI N/AIEA
PTHR21136:SF46Panther JGI N/AIEA
PF00957PFAM Synaptobrevin JGI N/AIEA

Proteins Associated with Glyma.09g019800
LocusGene SymbolProtein Name
VAMP721D vesicle-associated membrane protein 721d

Expression Patterns of Glyma.09g019800
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.09g019800
ParalogEvidenceComments
Glyma.15g126200 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.09g019800 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma09g02310 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.09g019800
>Glyma.09g019800.2 sequence-type=transcript locus=Glyma.09g019800 ID=Glyma.09g019800.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
AATTCTCTCTCTTTTAAACCCTGCTCTCCATTTTGTCTCTTCCTTTCTCTCTCTACAAagagtgcgtgtgagagtgagagagagagagagagggaTTTGGAACTTTGGATATCTATAGCGAAAGCGTGACACCACCAAAAACCGAACTGTTCCCAGATCTCTCTCTCACTCTTCCAACAATCGAAATCCAAAACCCTACCGACACCACACTCAATCGAAATTCTTCATTCTCTTCTCATCGATGGGGCAGAAGTCTCTGATCTACGCGTTCGTGTCGCGGGGAACAGTGATTCTCGCGGAGTACACCGAATTCAGCGGAAACTTCAACTCCATCGCCTTCCAGTGCCTTCAGAAGCTCCCTGCCACCAACAACAAGTTCACCTACAATTGCGACGCACACACCTTCAATTACCTCGTCGACAATGGCTACAATGAATCAATTGGAAGACAGTTACCCATGGCTTTTCTAGAGCGTGTCAAAGATGAATTTGTGTCAAAATATGGTGGTGGAAAGGCTGCCACAGCTCCTGCAAACAGCCTTAACAAGGAATTTGGGCCAAAGTTGAGGGAACATATGCAGTACTGTGTTGATCATCCTGAAGAGATAAGCAAACTTGCAAAGGTGAAAGCTCAGGTTTCTGAAGTTAAGGGTGTCATGATGGAGAATATTGAAAAGGTTCTGGACAGGGGTGACAAGATAGAACTTCTGGTGGACAAGACTGAGAACCTTCATAACCAGGCACAAGATTTCAGGACTTCTGGAACCAGAATCCGTCGAAAAATGTGGCTGCAAAACATGAAGATAAAGCTGATTGTATTGGGAATATTGATAGCACTTATCCTGATAATAGTCCTATCTGTGTGTCGTGGGTTCAACTGTGGAAAATAGCACCATTCTCCGAGGCCTTTTATCATGTTATTTCAACCTTGAGATTATCGGAGAAAAGATACTAATGAATGGCATGAGTTTGTATGTAATATAGATATAGATATAGTAAAGGTCGTATGTTGGTCACTTTGATCTACTTATAAATGCTTTTGAAAATATAATTTGGGTTGTCAAATTGAAATTTGATTTCCATTTTATTCATATTCATGAATCATGTAAATGTGTTTCTTGATCATATTCTTTAATGATTCCAGTTACAGCATTTTGGCATTGTCGACCTTTATTAGATTTATTGAACTTGTGGCCTTTCATTCCTGATTCCATCCTACATAAGGAGTGGAGAGGTTATTTCTTTC
Coding sequences of Glyma.09g019800
>Glyma.09g019800.1 sequence-type=CDS polypeptide=Glyma.09g019800.1.p locus=Glyma.09g019800 ID=Glyma.09g019800.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGGGCAGAAGTCTCTGATCTACGCGTTCGTGTCGCGGGGAACAGTGATTCTCGCGGAGTACACCGAATTCAGCGGAAACTTCAACTCCATCGCCTTCCAGTGCCTTCAGAAGCTCCCTGCCACCAACAACAAGTTCACCTACAATTGCGACGCACACACCTTCAATTACCTCGTCGACAATGGCTACACATATTGTGTTGTTGCAGATGAATCAATTGGAAGACAGTTACCCATGGCTTTTCTAGAGCGTGTCAAAGATGAATTTGTGTCAAAATATGGTGGTGGAAAGGCTGCCACAGCTCCTGCAAACAGCCTTAACAAGGAATTTGGGCCAAAGTTGAGGGAACATATGCAGTACTGTGTTGATCATCCTGAAGAGATAAGCAAACTTGCAAAGGTGAAAGCTCAGGTTTCTGAAGTTAAGGGTGTCATGATGGAGAATATTGAAAAGGTTCTGGACAGGGGTGACAAGATAGAACTTCTGGTGGACAAGACTGAGAACCTTCATAACCAGGCACAAGATTTCAGGACTTCTGGAACCAGAATCCGTCGAAAAATGTGGCTGCAAAACATGAAGATAAAGCTGATTGTATTGGGAATATTGATAGCACTTATCCTGATAATAGTCCTATCTGTGTGTCGTGGGTTCAACTGTGGAAAATAG

>Glyma.09g019800.2 sequence-type=CDS polypeptide=Glyma.09g019800.2.p locus=Glyma.09g019800 ID=Glyma.09g019800.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGGGCAGAAGTCTCTGATCTACGCGTTCGTGTCGCGGGGAACAGTGATTCTCGCGGAGTACACCGAATTCAGCGGAAACTTCAACTCCATCGCCTTCCAGTGCCTTCAGAAGCTCCCTGCCACCAACAACAAGTTCACCTACAATTGCGACGCACACACCTTCAATTACCTCGTCGACAATGGCTACAATGAATCAATTGGAAGACAGTTACCCATGGCTTTTCTAGAGCGTGTCAAAGATGAATTTGTGTCAAAATATGGTGGTGGAAAGGCTGCCACAGCTCCTGCAAACAGCCTTAACAAGGAATTTGGGCCAAAGTTGAGGGAACATATGCAGTACTGTGTTGATCATCCTGAAGAGATAAGCAAACTTGCAAAGGTGAAAGCTCAGGTTTCTGAAGTTAAGGGTGTCATGATGGAGAATATTGAAAAGGTTCTGGACAGGGGTGACAAGATAGAACTTCTGGTGGACAAGACTGAGAACCTTCATAACCAGGCACAAGATTTCAGGACTTCTGGAACCAGAATCCGTCGAAAAATGTGGCTGCAAAACATGAAGATAAAGCTGATTGTATTGGGAATATTGATAGCACTTATCCTGATAATAGTCCTATCTGTGTGTCGTGGGTTCAACTGTGGAAAATAG
Predicted protein sequences of Glyma.09g019800
>Glyma.09g019800.1.p sequence-type=predicted peptide transcript=Glyma.09g019800.1 locus=Glyma.09g019800 ID=Glyma.09g019800.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MGQKSLIYAFVSRGTVILAEYTEFSGNFNSIAFQCLQKLPATNNKFTYNCDAHTFNYLVDNGYTYCVVADESIGRQLPMAFLERVKDEFVSKYGGGKAATAPANSLNKEFGPKLREHMQYCVDHPEEISKLAKVKAQVSEVKGVMMENIEKVLDRGDKIELLVDKTENLHNQAQDFRTSGTRIRRKMWLQNMKIKLIVLGILIALILIIVLSVCRGFNCGK*

>Glyma.09g019800.2.p sequence-type=predicted peptide transcript=Glyma.09g019800.2 locus=Glyma.09g019800 ID=Glyma.09g019800.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MGQKSLIYAFVSRGTVILAEYTEFSGNFNSIAFQCLQKLPATNNKFTYNCDAHTFNYLVDNGYNESIGRQLPMAFLERVKDEFVSKYGGGKAATAPANSLNKEFGPKLREHMQYCVDHPEEISKLAKVKAQVSEVKGVMMENIEKVLDRGDKIELLVDKTENLHNQAQDFRTSGTRIRRKMWLQNMKIKLIVLGILIALILIIVLSVCRGFNCGK*






Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
USDA Logo
Iowa State University Logo