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Report for Sequence Feature Glyma.09g012500

Feature Type:gene_model
Chromosome:Gm09
Start:954122
stop:960066
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.09g012500
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G07740.1AT homolog of yeast ADA2 2A JGI N/AIEA
GO:0006338GO-bp chromatin remodeling EnsemblGenomesN/AIEA
GO:0006351GO-bp transcription, DNA-templated EnsemblGenomesN/AIEA
GO:0006355GO-bp regulation of transcription, DNA-templated EnsemblGenomesN/AIEA
GO:0006357GO-bp regulation of transcription by RNA polymerase II EnsemblGenomesN/AIEA
GO:0016573GO-bp histone acetylation EnsemblGenomesN/AIEA
GO:0035065GO-bp regulation of histone acetylation EnsemblGenomesN/AIEA
GO:0035066GO-bp positive regulation of histone acetylation EnsemblGenomesN/AIEA
GO:1903508GO-bp positive regulation of nucleic acid-templated transcription EnsemblGenomesN/AIEA
GO:0005634GO-cc nucleus EnsemblGenomesN/AIEA
GO:0003677GO-mf DNA binding EnsemblGenomesN/AIEA
GO:0003682GO-mf chromatin binding EnsemblGenomesN/AIEA
GO:0003682GO-mf chromatin binding JGI N/AIEA
GO:0003700GO-mf DNA binding transcription factor activity EnsemblGenomesN/AIEA
GO:0003713GO-mf transcription coactivator activity EnsemblGenomesN/AIEA
GO:0004402GO-mf histone acetyltransferase activity EnsemblGenomesN/AIEA
GO:0005515GO-mf protein binding EnsemblGenomesN/AIEA
GO:0005515GO-mf protein binding JGI N/AIEA
GO:0008270GO-mf zinc ion binding EnsemblGenomesN/AIEA
GO:0008270GO-mf zinc ion binding JGI N/AIEA
GO:0046872GO-mf metal ion binding EnsemblGenomesN/AIEA
PTHR12374Panther TRANSCRIPTIONAL ADAPTOR 2 (ADA2)-RELATED JGI N/AIEA
PTHR12374:SF12Panther JGI N/AIEA
PF00249PFAM Myb-like DNA-binding domain JGI N/AIEA
PF00569PFAM Zinc finger, ZZ type JGI N/AIEA
PF04433PFAM SWIRM domain JGI N/AIEA

Expression Patterns of Glyma.09g012500
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.09g012500 not represented in the dataset
Glyma.09g012500 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.09g012500
ParalogEvidenceComments
Glyma.15g117100 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.09g012500 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma09g01501 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.09g012500
>Glyma.09g012500.1 sequence-type=CDS polypeptide=Glyma.09g012500.1.p locus=Glyma.09g012500 ID=Glyma.09g012500.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGGTCGCTCTCGTGGGAATTTCCACCACGCCGATGAGGACCCCAACCAGAGGTCAAGGAGAAAAAAGAATGCTGCCAGTGGAGAGAATTCGGAGTCTGGAGCTGCAGGCCAAGGAGCAGGCGAAGGGAAAAAGGCTCTGTACCACTGCAATTATTGTAATAAGGATATAACAGGAAAAATCCGTATTAAGTGTGCCATGTGCCCAGATTTTGACTTGTGTATAGAGTGCTTTTCTGTTGGAGCTGAGGTGACACCTCATAAAAGCAACCACCCTTACAGGGTTATGGATAATTTGTCTTTCCCTCTTATTTGCCCAGACTGGAATGCAGATGATGAAATTTTGCTTCTAGAGGGAATTGAAATGTATGGCTTGGGAAACTGGACAGAAGTTGCCGAGCATGTTGGAACCAAAAACAAAGAGTCATGCATAGAACACTATAGGAATGTATACCTGAATTCCCCGTTCTTTCCTGTTCCGGATATGTCTCATGTTGTTGGGAAAAACAGAAAAGAACTTCTTGCCATGGCGAAAGGGCAGGGTGAAGACAAGAAAGGAATTTCCATGGCGGATCTTAGTATAAAGGCAGAATCTTCCTTTTCTCCATCTAGAGTCAAGGTTGAAGATTCGCATAAAGCTGGCTCTGCTAATCGTTTGGCATCCAGTTTGAATTCAGAGTCGGATGGCCCCTCGGGTAACACACATGCTGCAAACCAAAAGGCATCTAATGTGGGCCGTGGAAAAGGTGGTCCAGGAATCATTAAAATGGAAGATTCTCAACTAGACAGAGATTTTGGAGGAAAAAAGCCTACTTCCTCTGGAAATGAAGGTCCTTCTTTAGTAGAATCGAGTGGTTATAACGCCAAAAGACAGGAATTTGATCCTGAATATGATAATGACGCTGAACAACTACTTGCTGAAATGGAATTTAAGGACACTGACACTGATGATGAGCGAGAGCTGAAACTACGGGTGTTGCGTTTCTATGCAAAAAGGCTTGATGAAAGAAAGCGAAGGAAGGATTTCATACTTGAAAGAAATTTGTTATACCCAAATCCATTTGAGAAGGATTTTACACCTGAGGAGAAGGCAATATGTCGGAATTATGACTTATTCATGCGCTTTCATACTAAGGAGGAGCATGAGGAATTGCTTAGAACCGTTATCTCTGAACATAGAACTCGTAAAAGACTTCAAGACCTTAAGGAAGCCCGGGCTGCTGGTTGCCGCAATTCAGCTGAAGCTGATAGATATCTGGCACAAAAGAGAAAAAGGGAAGCTGAAGAAAGTGCTCGTAGGACAAAAGAAAGTGCTCAGGGTGGCCCAAGCAATCTAGGGGTTTCTAATGCATTGATGTCTCCAGACTCTGCTGGCAAGGATTTGAGAGGAAGACCTGCAGGGCCTGCTACTTCTAGTTCTGTCAATGAAATGGACGTGACAGGATACTATGGGGCAGATTTACTTTCTGAATCGGAGAAACGTTTATGCTGTGAGCTAAGGTTGCCTCCAGCCATGTATCTAAAGATGCAAGAGCAGCTGTCTCTACAAATACTTGCTGGCACTGTCACTGCAAAATCTGATGCTCATCAATTGTTCAAGATGGATGCCATGAAAATTGACAGGGTGTATGATATTCTCATTAAAAAGGGGATTGGTTCCCCCTGA
Predicted protein sequences of Glyma.09g012500
>Glyma.09g012500.1.p sequence-type=predicted peptide transcript=Glyma.09g012500.1 locus=Glyma.09g012500 ID=Glyma.09g012500.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MGRSRGNFHHADEDPNQRSRRKKNAASGENSESGAAGQGAGEGKKALYHCNYCNKDITGKIRIKCAMCPDFDLCIECFSVGAEVTPHKSNHPYRVMDNLSFPLICPDWNADDEILLLEGIEMYGLGNWTEVAEHVGTKNKESCIEHYRNVYLNSPFFPVPDMSHVVGKNRKELLAMAKGQGEDKKGISMADLSIKAESSFSPSRVKVEDSHKAGSANRLASSLNSESDGPSGNTHAANQKASNVGRGKGGPGIIKMEDSQLDRDFGGKKPTSSGNEGPSLVESSGYNAKRQEFDPEYDNDAEQLLAEMEFKDTDTDDERELKLRVLRFYAKRLDERKRRKDFILERNLLYPNPFEKDFTPEEKAICRNYDLFMRFHTKEEHEELLRTVISEHRTRKRLQDLKEARAAGCRNSAEADRYLAQKRKREAEESARRTKESAQGGPSNLGVSNALMSPDSAGKDLRGRPAGPATSSSVNEMDVTGYYGADLLSESEKRLCCELRLPPAMYLKMQEQLSLQILAGTVTAKSDAHQLFKMDAMKIDRVYDILIKKGIGSP*






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