Report for Sequence Feature Glyma.09g009900
| Feature Type: | gene_model |
| Chromosome: | Gm09 |
| Start: | 773199 |
| stop: | 779076 |
| Source: | JGI |
| Version: | Wm82.a4.v1 |
| High confidence: | yes |
| 
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Annotations for Glyma.09g009900
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|
| AT4G12610.2 | AT |
ATRAP74,RAP74 |
JGI | N/A | IEA |
| GO:0006367 | GO-bp |
transcription initiation from RNA polymerase II promoter |
JGI | N/A | IEA |
| GO:0032968 | GO-bp |
positive regulation of transcription elongation from RNA polymerase II promoter |
JGI | N/A | IEA |
| GO:0005634 | GO-cc |
nucleus |
JGI | N/A | IEA |
| GO:0003677 | GO-mf |
DNA binding |
JGI | N/A | IEA |
| K03138 | KEGG |
Transcription machinery |
JGI | N/A | IEA |
| KOG2393 |
KOG |
Transcription initiation factor IIF, large subunit (RAP74) |
JGI | N/A | IEA |
| PTHR13011 | PantherFam |
TFIIF-ALPHA |
JGI | N/A | IEA |
| PTHR13011:SF0 | PantherFam |
GENERAL TRANSCRIPTION FACTOR IIF SUBUNIT 1 |
JGI | N/A | IEA |
| PF05793 | Pfam |
Transcription initiation factor IIF, alpha subunit (TFIIF-alpha) |
JGI | N/A | IEA |
Gene model name correspondences to Glyma.09g009900 Gene Call Version Wm82.a4.v1
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|
| Glyma09g01260 | Wm82.a1.v1.1 | IGC | As supplied by JGI |
Coding sequences of Glyma.09g009900
>Glyma.09g009900.1 sequence-type=CDS polypeptide=Glyma.09g009900.1.p locus=Glyma.09g009900 id=Glyma.09g009900.1.Wm82.a4.v1 annot-version=Wm82.a4.v1
ATGTCGACCGACCTGCAATTGAAGTCGAGTTGTAGCGGATGCGGATCAACGACGGATCTCTACGGAAGCAATTGCAAGCACATGACTCTGTGCTTGGGCTGCGGCAAAACCATGGCGGCCAAACGCGCCAAATGCGTTGATTGTGGCGCCACCCTCACTCGTTTGATTCGAGAATATAATGTTCGTGCAAGTTCCCCCAATGATAAGAATTACTTCATTGGAAGGTTCATAAACGGTTTGCCTGATTTTTCGAAGAAGAAAAGTGCTGAGAACAAGTGGTCTCTGCAGAAGGATGGACTACACGGACGCCAAATTACTGATACTTTGCGGGAGAAGTACAAGAACAAGCCTTGGCTCTTGGAGGATGAAACAGGTCAGTCCCAGTTCCAGGGTCATCTAGAAGGTTCACAATCGGCTACATATTACCTGCTAATGAAGGAAAGGAAGGAGTTTGTTGCCATTCCTGCTGGTTCTTGGTACAACTTTAACAAGGTTGCTCAATATAAGCAATTGACATTGGAGGAAGCAGAAGAGAAGATGAAGAATAGAAAGAAAACTGCAGATGGATATCAAAGATGGATGATGAAAGCAGCAAATAATGGCCCAGCTGCATTTGGTGAACATGGGAAATTTGATGACAACGAAAGCAACACGGGTGGAGGGAGAAGCCATAAAAAAACTGATGAGGATGATGAAGGTCATGTGTCTGATAAGGGAGAGGAGGATGAAGAGGAGGAATCAGAAAGGAAGAGTAGACTTGGACTTAATAAAAGAGCTGGTGAAGATGATGAAGAAGGTCCAAGGGGAGGGGACCATGATCTAGATGACGACGATGTTGAGAAGGGCGATGATTGGGAGCATGAAGAGATTTTCACTGATGATGATGAAGCTGTTGGCAATGATCCTGAGGAAAGGGAGGATTTGGCTCCTGAAGTTCCTGCTCCTCCTGAAATCAAGCAGGATGAGGAGGAGGAAGATGAAGATAATGAAGAGGGAGAAGGTCTGAGTAAATCTGGGAAAGAGCTGAAGAAGCTGCTTGGAAAAGCTAGTGGTCTGAATGAATCTGATGCAGAGGATGATGATGACGATGACGATGATGTGGATGATGATGTTGGTGTCCCTCCTGTCATTGCTACAAAGCAAAAGGATGCCCTTAAGGAAGAACCCATTGACAATAGCCCTTCAAAGCCAACAGCAACAGGACCTGCTCGTGGAACACCTTCTTCAAAGTCTTCAAAGGGGAAGAGAAAATTAAATGAAGAAACAAAGCCATCTAATACCGCAACTCCAAAGAAGGAACCAAAATTGTCCGCCAAAGATGTAAATGGATCTGCATCTAAAAGTAGTGCACCTCCAAAAGGTACACCTCCATTGTCATCAAAGGGCGGGTCTTCCACAACAACAACAGCTTCTGGACCGGTGAGTGAGGAAGAAATTAGGGCTGTTTTAAGGCAGAAGACTCCGGTGACCACTCAGGATCTTGTAGCTAAATTTAAGGCAAGACTAAGATGTTCAGAGGATAAGCAAGCATTTGCTGAGATCCTTAAGCGAATCTCTAAGATACAGAAGACTACAACTGGAGCCAGTTATGTTATCCTGAGAGATAAGTGA
>Glyma.09g009900.2 sequence-type=CDS polypeptide=Glyma.09g009900.2.p locus=Glyma.09g009900 id=Glyma.09g009900.2.Wm82.a4.v1 annot-version=Wm82.a4.v1
ATGTCCTATTTTTATTACCGGTCGAAAGACAGTAGGCAGATGTGTTGTATGGCATGTTTGTTTTTTAGGTACAACTTTAACAAGGTTGCTCAATATAAGCAATTGACATTGGAGGAAGCAGAAGAGAAGATGAAGAATAGAAAGAAAACTGCAGATGGATATCAAAGATGGATGATGAAAGCAGCAAATAATGGCCCAGCTGCATTTGGTGAACATGGGAAATTTGATGACAACGAAAGCAACACGGGTGGAGGGAGAAGCCATAAAAAAACTGATGAGGATGATGAAGGTCATGTGTCTGATAAGGGAGAGGAGGATGAAGAGGAGGAATCAGAAAGGAAGAGTAGACTTGGACTTAATAAAAGAGCTGGTGAAGATGATGAAGAAGGTCCAAGGGGAGGGGACCATGATCTAGATGACGACGATGTTGAGAAGGGCGATGATTGGGAGCATGAAGAGATTTTCACTGATGATGATGAAGCTGTTGGCAATGATCCTGAGGAAAGGGAGGATTTGGCTCCTGAAGTTCCTGCTCCTCCTGAAATCAAGCAGGATGAGGAGGAGGAAGATGAAGATAATGAAGAGGGAGAAGGTCTGAGTAAATCTGGGAAAGAGCTGAAGAAGCTGCTTGGAAAAGCTAGTGGTCTGAATGAATCTGATGCAGAGGATGATGATGACGATGACGATGATGTGGATGATGATGTTGGTGTCCCTCCTGTCATTGCTACAAAGCAAAAGGATGCCCTTAAGGAAGAACCCATTGACAATAGCCCTTCAAAGCCAACAGCAACAGGACCTGCTCGTGGAACACCTTCTTCAAAGTCTTCAAAGGGGAAGAGAAAATTAAATGAAGAAACAAAGCCATCTAATACCGCAACTCCAAAGAAGGAACCAAAATTGTCCGCCAAAGATGTAAATGGATCTGCATCTAAAAGTAGTGCACCTCCAAAAGGTACACCTCCATTGTCATCAAAGGGCGGGTCTTCCACAACAACAACAGCTTCTGGACCGGTGAGTGAGGAAGAAATTAGGGCTGTTTTAAGGCAGAAGACTCCGGTGACCACTCAGGATCTTGTAGCTAAATTTAAGGCAAGACTAAGATGTTCAGAGGATAAGCAAGCATTTGCTGAGATCCTTAAGCGAATCTCTAAGATACAGAAGACTACAACTGGAGCCAGTTATGTTATCCTGAGAGATAAGTGA
Predicted protein sequences of Glyma.09g009900
>Glyma.09g009900.1.p sequence-type=predicted peptide transcript=Glyma.09g009900.1 locus=Glyma.09g009900 id=Glyma.09g009900.1.p.Wm82.a4.v1 annot-version=Wm82.a4.v1
MSTDLQLKSSCSGCGSTTDLYGSNCKHMTLCLGCGKTMAAKRAKCVDCGATLTRLIREYNVRASSPNDKNYFIGRFINGLPDFSKKKSAENKWSLQKDGLHGRQITDTLREKYKNKPWLLEDETGQSQFQGHLEGSQSATYYLLMKERKEFVAIPAGSWYNFNKVAQYKQLTLEEAEEKMKNRKKTADGYQRWMMKAANNGPAAFGEHGKFDDNESNTGGGRSHKKTDEDDEGHVSDKGEEDEEEESERKSRLGLNKRAGEDDEEGPRGGDHDLDDDDVEKGDDWEHEEIFTDDDEAVGNDPEEREDLAPEVPAPPEIKQDEEEEDEDNEEGEGLSKSGKELKKLLGKASGLNESDAEDDDDDDDDVDDDVGVPPVIATKQKDALKEEPIDNSPSKPTATGPARGTPSSKSSKGKRKLNEETKPSNTATPKKEPKLSAKDVNGSASKSSAPPKGTPPLSSKGGSSTTTTASGPVSEEEIRAVLRQKTPVTTQDLVAKFKARLRCSEDKQAFAEILKRISKIQKTTTGASYVILRDK*
>Glyma.09g009900.2.p sequence-type=predicted peptide transcript=Glyma.09g009900.2 locus=Glyma.09g009900 id=Glyma.09g009900.2.p.Wm82.a4.v1 annot-version=Wm82.a4.v1
MSYFYYRSKDSRQMCCMACLFFRYNFNKVAQYKQLTLEEAEEKMKNRKKTADGYQRWMMKAANNGPAAFGEHGKFDDNESNTGGGRSHKKTDEDDEGHVSDKGEEDEEEESERKSRLGLNKRAGEDDEEGPRGGDHDLDDDDVEKGDDWEHEEIFTDDDEAVGNDPEEREDLAPEVPAPPEIKQDEEEEDEDNEEGEGLSKSGKELKKLLGKASGLNESDAEDDDDDDDDVDDDVGVPPVIATKQKDALKEEPIDNSPSKPTATGPARGTPSSKSSKGKRKLNEETKPSNTATPKKEPKLSAKDVNGSASKSSAPPKGTPPLSSKGGSSTTTTASGPVSEEEIRAVLRQKTPVTTQDLVAKFKARLRCSEDKQAFAEILKRISKIQKTTTGASYVILRDK*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
