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Report for Sequence Feature Glyma.09g009900

Feature Type:gene_model
Chromosome:Gm09
Start:774781
stop:780664
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.09g009900
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G12610.2AT transcription activators;DNA binding;RNA polymerase II transcription factors;catalytics;transcription initiation factors JGI N/AIEA
GO:0006367GO-bp transcription initiation from RNA polymerase II promoter EnsemblGenomesN/AIEA
GO:0032968GO-bp positive regulation of transcription elongation from RNA polymerase II promoter EnsemblGenomesN/AIEA
GO:0045893GO-bp positive regulation of transcription, DNA-templated JGI N/AIEA
GO:0005634GO-cc nucleus EnsemblGenomesN/AIEA
GO:0005634GO-cc nucleus JGI N/AIEA
GO:0003677GO-mf DNA binding EnsemblGenomesN/AIEA
GO:0003677GO-mf DNA binding JGI N/AIEA
KOG2393 KOG Transcription initiation factor IIF, large subunit (RAP74) JGI N/AIEA
PTHR13011Panther TFIIF-ALPHA JGI N/AIEA
PF05793PFAM Transcription initiation factor IIF, alpha subunit (TFIIF-alpha) JGI N/AIEA

Expression Patterns of Glyma.09g009900
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.09g009900
ParalogEvidenceComments
Glyma.15g114200 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.09g009900 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma09g01260 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.09g009900
>Glyma.09g009900.1 sequence-type=CDS polypeptide=Glyma.09g009900.1.p locus=Glyma.09g009900 ID=Glyma.09g009900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGTCGACCGACCTGCAATTGAAGTCGAGTTGTAGCGGATGCGGATCAACGACGGATCTCTACGGAAGCAATTGCAAGCACATGACTCTGTGCTTGGGCTGCGGCAAAACCATGGCGGCCAAACGCGCCAAATGCGTTGATTGTGGCGCCACCCTCACTCGTTTGATTCGAGAATATAATGTTCGTGCAAGTTCCCCCAATGATAAGAATTACTTCATTGGAAGGTTCATAAACGGTTTGCCTGATTTTTCGAAGAAGAAAAGTGCTGAGAACAAGTGGTCTCTGCAGAAGGATGGACTACACGGACGCCAAATTACTGATACTTTGCGGGAGAAGTACAAGAACAAGCCTTGGCTCTTGGAGGATGAAACAGGTCAGTCCCAGTTCCAGGGTCATCTAGAAGGTTCACAATCGGCTACATATTACCTGCTAATGAAGGAAAGGAAGGAGTTTGTTGCCATTCCTGCTGGTTCTTGGTACAACTTTAACAAGGTTGCTCAATATAAGCAATTGACATTGGAGGAAGCAGAAGAGAAGATGAAGAATAGAAAGAAAACTGCAGATGGATATCAAAGATGGATGATGAAAGCAGCAAATAATGGCCCAGCTGCATTTGGTGAACATGGGAAATTTGATGACAACGAAAGCAACACGGGTGGAGGGAGAAGCCATAAAAAAACTGATGAGGATGATGAAGGTCATGTGTCTGATAAGGGAGAGGAGGATGAAGAGGAGGAATCAGAAAGGAAGAGTAGACTTGGACTTAATAAAAGAGCTGGTGAAGATGATGAAGAAGGTCCAAGGGGAGGGGACCATGATCTAGATGACGACGATGTTGAGAAGGGCGATGATTGGGAGCATGAAGAGATTTTCACTGATGATGATGAAGCTGTTGGCAATGATCCTGAGGAAAGGGAGGATTTGGCTCCTGAAGTTCCTGCTCCTCCTGAAATCAAGCAGGATGAGGAGGAGGAAGATGAAGATAATGAAGAGGGAGAAGGTCTGAGTAAATCTGGGAAAGAGCTGAAGAAGCTGCTTGGAAAAGCTAGTGGTCTGAATGAATCTGATGCAGAGGATGATGATGACGATGACGATGATGTGGATGATGATGTTGGTGTCCCTCCTGTCATTGCTACAAAGCAAAAGGATGCCCTTAAGGAAGAACCCATTGACAATAGCCCTTCAAAGCCAACAGCAACAGGACCTGCTCGTGGAACACCTTCTTCAAAGTCTTCAAAGGGGAAGAGAAAATTAAATGAAGAAACAAAGCCATCTAATACCGCAACTCCAAAGAAGGAACCAAAATTGTCCGCCAAAGATGTAAATGGATCTGCATCTAAAAGTAGTGCACCTCCAAAAGGTACACCTCCATTGTCATCAAAGGGCGGGTCTTCCACAACAACAACAGCTTCTGGACCGGTGAGTGAGGAAGAAATTAGGGCTGTTTTAAGGCAGAAGACTCCGGTGACCACTCAGGATCTTGTAGCTAAATTTAAGGCAAGACTAAGATGTTCAGAGGATAAGCAAGCATTTGCTGAGATCCTTAAGCGAATCTCTAAGATACAGAAGACTACAACTGGAGCCAGTTATGTTATCCTGAGAGATAAGTGA
Predicted protein sequences of Glyma.09g009900
>Glyma.09g009900.1.p sequence-type=predicted peptide transcript=Glyma.09g009900.1 locus=Glyma.09g009900 ID=Glyma.09g009900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MSTDLQLKSSCSGCGSTTDLYGSNCKHMTLCLGCGKTMAAKRAKCVDCGATLTRLIREYNVRASSPNDKNYFIGRFINGLPDFSKKKSAENKWSLQKDGLHGRQITDTLREKYKNKPWLLEDETGQSQFQGHLEGSQSATYYLLMKERKEFVAIPAGSWYNFNKVAQYKQLTLEEAEEKMKNRKKTADGYQRWMMKAANNGPAAFGEHGKFDDNESNTGGGRSHKKTDEDDEGHVSDKGEEDEEEESERKSRLGLNKRAGEDDEEGPRGGDHDLDDDDVEKGDDWEHEEIFTDDDEAVGNDPEEREDLAPEVPAPPEIKQDEEEEDEDNEEGEGLSKSGKELKKLLGKASGLNESDAEDDDDDDDDVDDDVGVPPVIATKQKDALKEEPIDNSPSKPTATGPARGTPSSKSSKGKRKLNEETKPSNTATPKKEPKLSAKDVNGSASKSSAPPKGTPPLSSKGGSSTTTTASGPVSEEEIRAVLRQKTPVTTQDLVAKFKARLRCSEDKQAFAEILKRISKIQKTTTGASYVILRDK*






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